Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Reverse (-)

43153684 .. 43156599

Gene Structure 2916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38790

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGATCAGCAAGGGCATGGGCATCCAACAACAATGGGAGTCCCAGGTGCAGGTCAAGCATCATATGGTGTGAACCCATATCAGCCTAGCCAAATGATGGGACTCTCTCCAACTGGATCAGTTGGAATGATGCAATCTCCCACTCAGCCGGGAGGTCCTTCTGCCCCTTCTCAGCTTGCACAACACCAAGCTTATCAGCACATCCACCAGCAACAACAACAGCAGCTACAGCAACAACTCCAAAACTTTTGGTCAGGTCAGTATCAAGAAATTGAGCAGGCTAATGATTTCAAGAACCATAGTTTACCATTGGCCAGGATTAAGAAGATTATGAAGGCTGATGAGGATGTAAGGATGATATCTGCTGAAGCTCCGGTCATATTTGCCAGGGCCTGTGAGATGTTTATTCTGGAGTTGACACTACGGTCTTGGAACCACACAGAGGAGAACAAAAGGAGAACATTGCAAAAGAATGACATTGCGGCAGCAATTACAAGGACTGATATATTTGATTTTCTAGTTGATATCGTCCCCAGAGAGGATTTGAAAGATGAGGTTCTTGCATCAATCCCAAGAGGTGGGAATGTTCCAGTTGTCGGTCCAGCTGATGGTCTTCCTTACTATTACATGCCTGCTCAACATCCACCACAGGTTGGTGCTCCCGGGATGATGGTGGGAAAGCCTGTGATGGATCAAAATATGTATGGCCAACCAACACATCCATACATGGCTCAGCCAGCTTGGCCTCAGCAACAACAGCCGCACAAAGATTCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

259

Amino Acids

28.86

Weight (kDa)

5.9

Isoelectric Point (pI)

65.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	93 - 164	4.2e-17	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	101 - 164	3.2e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	424
Acc36I	ACCTGC	1 cut(s)	41
AccB7I	CCANNNNNTGG	4 cut(s)	97, 578, 608, 653
AciI	CCGC	2 cut(s)	482, 761
AclWI	GGATC	3 cut(s)	12, 124, 699
AcoI	YGGCCR	2 cut(s)	312, 706
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	8 cut(s)	50, 97, 442, 538, 578, 596, 608, 653
AgsI	TTSAA	2 cut(s)	292, 547
AjnI	CCWGG	3 cut(s)	43, 314, 386
AluBI	AGCT	6 cut(s)	175, 191, 226, 371, 605, 740
AluI	AGCT	6 cut(s)	175, 191, 226, 371, 605, 740
Alw21I	GWGCWC	1 cut(s)	661
AlwI	GGATC	3 cut(s)	12, 124, 699
AlwNI	CAGNNNCTG	1 cut(s)	393
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	4 cut(s)	312, 390, 706, 743
ApeKI	GCWGC	2 cut(s)	223, 485
AspS9I	GGNCC	3 cut(s)	155, 390, 599
AsuC2I	CCSGG	3 cut(s)	150, 663, 664
AvaI	CYCGRG	1 cut(s)	662
AvaII	GGWCC	2 cut(s)	155, 599
BalI	TGGCCA	2 cut(s)	314, 708
BbsI	GAAGAC	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	661
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	2 cut(s)	235, 497
BccI	CCATC	4 cut(s)	91, 602, 664, 682
BciT130I	CCWGG	3 cut(s)	45, 316, 388
BcnI	CCSGG	3 cut(s)	150, 663, 664
BfaI	CTAG	2 cut(s)	87, 518
BfmI	CTRYAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	742
BisI	GCNGC	4 cut(s)	224, 483, 486, 761
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	4 cut(s)	225, 484, 487, 762
Bme1390I	CCNGG	6 cut(s)	45, 150, 316, 388, 663, 664
Bme18I	GGWCC	2 cut(s)	155, 599
BmeT110I	CYCGRG	1 cut(s)	662
BmgT120I	GGNCC	3 cut(s)	155, 390, 599
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	6 cut(s)	45, 150, 316, 388, 663, 664
BmsI	GCATC	4 cut(s)	31, 68, 120, 572
BpiI	GAAGAC	1 cut(s)	605
BpmI	CTGGAG	1 cut(s)	431
Bpu10I	CCTNAGC	1 cut(s)	747
Bpu1102I	GCTNAGC	1 cut(s)	732
BpuMI	CCSGG	3 cut(s)	150, 663, 664
BsaJI	CCNNGG	3 cut(s)	43, 387, 662
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	8 cut(s)	50, 97, 442, 538, 578, 596, 608, 653
Bse1I	ACTGG	2 cut(s)	118, 590
Bse3DI	GCAATG	2 cut(s)	461, 477
BseBI	CCWGG	3 cut(s)	45, 316, 388
BseDI	CCNNGG	3 cut(s)	43, 387, 662
BseGI	GGATG	7 cut(s)	22, 201, 352, 360, 640, 672, 718
BseLI	CCNNNNNNNGG	8 cut(s)	50, 97, 442, 538, 578, 596, 608, 653
BseMI	GCAATG	2 cut(s)	461, 477
BseMII	CTCAG	5 cut(s)	158, 185, 746, 761, 765
BseNI	ACTGG	2 cut(s)	118, 590
BseRI	GAGGAG	1 cut(s)	458
BseXI	GCAGC	2 cut(s)	235, 497
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	314, 392, 708, 745
BsiHKAI	GWGCWC	1 cut(s)	661
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	3 cut(s)	149, 374, 663
BslFI	GGGAC	3 cut(s)	26, 114, 515
BslI	CCNNNNNNNGG	8 cut(s)	50, 97, 442, 538, 578, 596, 608, 653
BsmFI	GGGAC	3 cut(s)	26, 114, 515
BsnI	GGCC	4 cut(s)	314, 392, 708, 745
BsoBI	CYCGRG	1 cut(s)	662
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	3 cut(s)	4, 116, 691
Bsp1720I	GCTNAGC	1 cut(s)	732
BspACI	CCGC	2 cut(s)	482, 761
BspANI	GGCC	4 cut(s)	314, 392, 708, 745
BspCNI	CTCAG	5 cut(s)	157, 184, 745, 760, 766
BspLI	GGNNCC	1 cut(s)	434
BspMI	ACCTGC	1 cut(s)	41
BspPI	GGATC	3 cut(s)	12, 124, 699
BsrDI	GCAATG	2 cut(s)	461, 477
BsrI	ACTGG	2 cut(s)	118, 590
BssECI	CCNNGG	3 cut(s)	43, 387, 662
BssMI	GATC	3 cut(s)	4, 116, 691
Bst2UI	CCWGG	3 cut(s)	45, 316, 388
Bst4CI	ACNGT	1 cut(s)	426
BstC8I	GCNNGC	4 cut(s)	177, 279, 633, 738
BstDEI	CTNAG	5 cut(s)	144, 171, 732, 747, 774
BstF5I	GGATG	7 cut(s)	22, 201, 352, 360, 640, 672, 718
BstKTI	GATC	3 cut(s)	7, 119, 694
BstMBI	GATC	3 cut(s)	4, 116, 691
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 229, 737, 742, 757
BstNI	CCWGG	3 cut(s)	45, 316, 388
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	6 cut(s)	43, 148, 314, 386, 661, 662
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	235, 497
BstV2I	GAAGAC	1 cut(s)	605
BsuRI	GGCC	4 cut(s)	314, 392, 708, 745
BtsCI	GGATG	7 cut(s)	22, 201, 352, 360, 640, 672, 718
BveI	ACCTGC	1 cut(s)	41
Cac8I	GCNNGC	4 cut(s)	177, 279, 633, 738
CaiI	CAGNNNCTG	1 cut(s)	393
Cfr13I	GGNCC	3 cut(s)	155, 390, 599
Cfr9I	CCCGGG	1 cut(s)	662
CviAII	CATG	3 cut(s)	17, 628, 727
DdeI	CTNAG	5 cut(s)	144, 171, 732, 747, 774
DpnI	GATC	3 cut(s)	6, 118, 693
DpnII	GATC	3 cut(s)	4, 116, 691
DrdI	GACNNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	424
EaeI	YGGCCR	2 cut(s)	312, 706
Eco32I	GATATC	2 cut(s)	360, 526
Eco47I	GGWCC	2 cut(s)	155, 599
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	662
EcoO109I	RGGNCCY	2 cut(s)	155, 390
EcoRII	CCWGG	3 cut(s)	43, 314, 386
EcoRV	GATATC	2 cut(s)	360, 526
FaeI	CATG	3 cut(s)	20, 631, 730
FaqI	GGGAC	3 cut(s)	26, 114, 515
FatI	CATG	3 cut(s)	16, 627, 726
FauNDI	CATATG	1 cut(s)	64
Fnu4HI	GCNGC	4 cut(s)	224, 483, 486, 761
FokI	GGATG	7 cut(s)	9, 188, 359, 367, 627, 679, 705
Fsp4HI	GCNGC	4 cut(s)	224, 483, 486, 761
FspBI	CTAG	2 cut(s)	87, 518
GluI	GCNGC	4 cut(s)	224, 483, 486, 761
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	4 cut(s)	314, 392, 708, 745
HapII	CCGG	3 cut(s)	149, 374, 663
Hin1II	CATG	3 cut(s)	20, 631, 730
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	3 cut(s)	39, 102, 770
HpaII	CCGG	3 cut(s)	149, 374, 663
Hpy166II	GTNNAC	3 cut(s)	73, 305, 417
Hpy188I	TCNGA	1 cut(s)	775
Hpy188III	TCNNGA	3 cut(s)	266, 292, 410
Hpy8I	GTNNAC	3 cut(s)	73, 305, 417
HpyAV	CCTTC	3 cut(s)	168, 177, 328
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4V	TGCA	5 cut(s)	50, 133, 179, 466, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 229, 737, 742, 757
HpyF3I	CTNAG	5 cut(s)	144, 171, 732, 747, 774
Hsp92II	CATG	3 cut(s)	20, 631, 730
Kzo9I	GATC	3 cut(s)	4, 116, 691
LmnI	GCTCC	2 cut(s)	376, 664
Lsp1109I	GCAGC	2 cut(s)	235, 497
LweI	GCATC	4 cut(s)	31, 68, 120, 572
MaeI	CTAG	2 cut(s)	87, 518
MalI	GATC	3 cut(s)	6, 118, 693
MboI	GATC	3 cut(s)	4, 116, 691
MboII	GAAGA	2 cut(s)	337, 605
MhlI	GDGCHC	1 cut(s)	661
MlsI	TGGCCA	2 cut(s)	314, 708
MluCI	AATT	2 cut(s)	270, 489
MluNI	TGGCCA	2 cut(s)	314, 708
MlyI	GAGTC	2 cut(s)	48, 96
MmeI	TCCRAC	3 cut(s)	50, 103, 134
MnlI	CCTC	7 cut(s)	146, 337, 436, 532, 547, 569, 756
Mox20I	TGGCCA	2 cut(s)	314, 708
MscI	TGGCCA	2 cut(s)	314, 708
MseI	TTAA	1 cut(s)	321
Msp20I	TGGCCA	2 cut(s)	314, 708
MspA1I	CMGCKG	1 cut(s)	605
MspI	CCGG	3 cut(s)	149, 374, 663
MspR9I	CCNGG	6 cut(s)	45, 150, 316, 388, 663, 664
MvaI	CCWGG	3 cut(s)	45, 316, 388
MwoI	GCNNNNNNNGC	5 cut(s)	56, 229, 737, 742, 757
NciI	CCSGG	3 cut(s)	150, 663, 664
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	3 cut(s)	4, 116, 691
NlaIII	CATG	3 cut(s)	20, 631, 730
NlaIV	GGNNCC	1 cut(s)	434
NspI	RCATGY	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	770
PflMI	CCANNNNNTGG	4 cut(s)	97, 578, 608, 653
PkrI	GCNGC	4 cut(s)	225, 484, 487, 762
PleI	GAGTC	2 cut(s)	47, 96
PpsI	GAGTC	2 cut(s)	47, 96
PpuMI	RGGWCCY	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	3 cut(s)	43, 314, 386
PspGI	CCWGG	3 cut(s)	43, 314, 386
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	3 cut(s)	155, 390, 599
PspPPI	RGGWCCY	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	393
PvuII	CAGCTG	1 cut(s)	605
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	4 cut(s)	224, 483, 486, 761
Sau3AI	GATC	3 cut(s)	4, 116, 691
Sau96I	GGNCC	3 cut(s)	155, 390, 599
SchI	GAGTC	2 cut(s)	48, 96
ScrFI	CCNGG	6 cut(s)	45, 150, 316, 388, 663, 664
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	4 cut(s)	31, 68, 120, 572
SfcI	CTRYAG	1 cut(s)	227
SinI	GGWCC	2 cut(s)	155, 599
SmaI	CCCGGG	1 cut(s)	664
Sse9I	AATT	2 cut(s)	270, 489
SsiI	CCGC	2 cut(s)	482, 761
SspMI	CTAG	2 cut(s)	87, 518
StyD4I	CCNGG	6 cut(s)	43, 148, 314, 386, 661, 662
TaaI	ACNGT	1 cut(s)	426
TaqII	GACCGA	1 cut(s)	587
TasI	AATT	2 cut(s)	270, 489
TauI	GCSGC	2 cut(s)	485, 763
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseI	GCWGC	2 cut(s)	223, 485
TspDTI	ATGAA	1 cut(s)	347
TspMI	CCCGGG	1 cut(s)	662
Van91I	CCANNNNNTGG	4 cut(s)	97, 578, 608, 653
VpaK11BI	GGWCC	2 cut(s)	155, 599
XceI	RCATGY	1 cut(s)	631
XmaI	CCCGGG	1 cut(s)	662
XspI	CTAG	2 cut(s)	87, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.