Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Forward (+)

16034439 .. 16037111

Gene Structure 2673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1185900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGAGTGGCGGGTACTGCAGCTCAAGCATCATATGGTGTGAACCCGTATGGATCAGTTGGGATGCTGCAATCTCCTACTCAGCCAGCAGGTCCTTCTGCCCCTTCTCAGCTTGCACAACACCAGCTAGCGTATCAGCACATCCACCAGCAACAACAACAGCAACTGCAGCAACAACTCCAAAAATTTTGGGGAGAGCAGCATAAAGAAATTGATCAAACTAATGATTTCAAAAACCATAGTTTGCCATTGGCCAGGATTAAGAAGATTATGAAAGCGGATGAGGATGTGAGGATGATATCAGCCGAAGCTCCCGTCATATTTGCTAGGGCCTGTGAGATGTTCATTCTAGAGTTGACAATGCGGTCTTGGAATCATACCGAGGAGAACAAAAGAAGAACACTGCAAAAGAACGACATCGCAGCAGCAATTACGCGGACAGATATATTTGACTTTCTTGTTGATATCGTCCCAAGAGAGGATTTGAAAGATGAAGTACTTGCATCAATCCCAAGAGGTGGGAATCTCCCAGTTGGGGGTCCATCTGATGGTGTTCCTTACTATTACATGCCTCCTCAGCATGCTCCACAGGTTGGTGCTCCGGGGAATCAGAATATGTATGGCCAACAGACACATGCGTACATTGCTCAGCCAACATGGCCACATCAACAACAGCAACCGCACGAAGATATCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

233

Amino Acids

26.05

Weight (kDa)

5.9

Isoelectric Point (pI)

62.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	70 - 144	1.7e-18	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	81 - 144	1.7e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	364
Acc36I	ACCTGC	1 cut(s)	80
AccB7I	CCANNNNNTGG	3 cut(s)	518, 548, 593
AccII	CGCG	1 cut(s)	436
AciI	CCGC	5 cut(s)	11, 278, 364, 436, 680
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	3 cut(s)	252, 622, 659
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	3 cut(s)	16, 498, 641
AfiI	CCNNNNNNNGG	6 cut(s)	478, 518, 535, 536, 548, 593
AgsI	TTSAA	2 cut(s)	232, 487
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	4 cut(s)	23, 112, 127, 311
AluI	AGCT	4 cut(s)	23, 112, 127, 311
Alw21I	GWGCWC	1 cut(s)	601
AlwI	GGATC	1 cut(s)	61
AlwNI	CAGNNNCTG	1 cut(s)	166
AoxI	GGCC	4 cut(s)	252, 330, 622, 659
ApeKI	GCWGC	6 cut(s)	20, 67, 169, 199, 422, 425
ApoI	RAATTY	1 cut(s)	185
ArsI	GACNNNNNNTTYG	2 cut(s)	300, 332
AspS9I	GGNCC	3 cut(s)	92, 330, 539
AsuC2I	CCSGG	1 cut(s)	603
AsuNHI	GCTAGC	1 cut(s)	127
AvaII	GGWCC	2 cut(s)	92, 539
BalI	TGGCCA	3 cut(s)	254, 624, 661
Bbv12I	GWGCWC	1 cut(s)	601
BbvCI	CCTCAGC	1 cut(s)	576
BbvI	GCAGC	6 cut(s)	32, 54, 181, 211, 434, 437
BccI	CCATC	2 cut(s)	542, 550
BciT130I	CCWGG	1 cut(s)	256
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	603
BfaI	CTAG	3 cut(s)	128, 327, 350
BfmI	CTRYAG	2 cut(s)	18, 167
BfuAI	ACCTGC	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	658
BisI	GCNGC	6 cut(s)	21, 68, 170, 200, 423, 426
BlpI	GCTNAGC	1 cut(s)	648
BlsI	GCNGC	6 cut(s)	22, 69, 171, 201, 424, 427
BmcAI	AGTACT	1 cut(s)	498
Bme1390I	CCNGG	2 cut(s)	256, 603
Bme18I	GGWCC	2 cut(s)	92, 539
BmgT120I	GGNCC	3 cut(s)	92, 330, 539
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	2 cut(s)	256, 603
BmrI	ACTGGG	1 cut(s)	524
BmsI	GCATC	3 cut(s)	38, 54, 512
BmtI	GCTAGC	1 cut(s)	131
BmuI	ACTGGG	1 cut(s)	524
Bpu10I	CCTNAGC	1 cut(s)	576
Bpu1102I	GCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	603
BsaJI	CCNNGG	2 cut(s)	381, 602
Bsc4I	CCNNNNNNNGG	6 cut(s)	478, 518, 535, 536, 548, 593
Bse1I	ACTGG	1 cut(s)	530
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	2 cut(s)	381, 602
BseGI	GGATG	5 cut(s)	69, 141, 286, 292, 300
BseLI	CCNNNNNNNGG	6 cut(s)	478, 518, 535, 536, 548, 593
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	4 cut(s)	95, 122, 590, 662
BseNI	ACTGG	1 cut(s)	530
BseRI	GAGGAG	2 cut(s)	398, 564
BseXI	GCAGC	6 cut(s)	32, 54, 181, 211, 434, 437
Bsh1236I	CGCG	1 cut(s)	436
BshFI	GGCC	4 cut(s)	254, 332, 624, 661
BsiHKAI	GWGCWC	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	602
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	6 cut(s)	478, 518, 535, 536, 548, 593
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	4 cut(s)	254, 332, 624, 661
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	2 cut(s)	53, 214
Bsp1720I	GCTNAGC	1 cut(s)	648
BspACI	CCGC	5 cut(s)	11, 278, 364, 436, 680
BspANI	GGCC	4 cut(s)	254, 332, 624, 661
BspCNI	CTCAG	4 cut(s)	94, 121, 589, 661
BspFNI	CGCG	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	540
BspMAI	CTGCAG	2 cut(s)	22, 171
BspMI	ACCTGC	1 cut(s)	80
BspOI	GCTAGC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	530
BssECI	CCNNGG	2 cut(s)	381, 602
BssMI	GATC	2 cut(s)	53, 214
Bst2UI	CCWGG	1 cut(s)	256
BstC8I	GCNNGC	4 cut(s)	87, 114, 129, 582
BstDEI	CTNAG	4 cut(s)	81, 108, 576, 648
BstF5I	GGATG	5 cut(s)	69, 141, 286, 292, 300
BstFNI	CGCG	1 cut(s)	436
BstKTI	GATC	2 cut(s)	56, 217
BstMBI	GATC	2 cut(s)	53, 214
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 26, 169, 577, 644, 658
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	3 cut(s)	571, 584, 638
BstSCI	CCNGG	2 cut(s)	254, 601
BstSFI	CTRYAG	2 cut(s)	18, 167
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	6 cut(s)	32, 54, 181, 211, 434, 437
BsuRI	GGCC	4 cut(s)	254, 332, 624, 661
BtgZI	GCGATG	1 cut(s)	403
BtsCI	GGATG	5 cut(s)	69, 141, 286, 292, 300
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	401
BveI	ACCTGC	1 cut(s)	80
Cac8I	GCNNGC	4 cut(s)	87, 114, 129, 582
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr13I	GGNCC	3 cut(s)	92, 330, 539
Csp6I	GTAC	3 cut(s)	15, 497, 640
CviAII	CATG	4 cut(s)	568, 581, 635, 657
CviQI	GTAC	3 cut(s)	15, 497, 640
DdeI	CTNAG	4 cut(s)	81, 108, 576, 648
DpnI	GATC	2 cut(s)	55, 216
DpnII	GATC	2 cut(s)	53, 214
DrdI	GACNNNNNNGTC	1 cut(s)	364
DseDI	GACNNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	3 cut(s)	252, 622, 659
Eco32I	GATATC	3 cut(s)	300, 466, 691
Eco47I	GGWCC	2 cut(s)	92, 539
EcoO109I	RGGNCCY	2 cut(s)	92, 330
EcoRII	CCWGG	1 cut(s)	254
EcoRV	GATATC	3 cut(s)	300, 466, 691
FaeI	CATG	4 cut(s)	571, 584, 638, 660
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	4 cut(s)	567, 580, 634, 656
FauI	CCCGC	1 cut(s)	4
FauNDI	CATATG	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	6 cut(s)	21, 68, 170, 200, 423, 426
FokI	GGATG	5 cut(s)	76, 128, 293, 299, 307
Fsp4HI	GCNGC	6 cut(s)	21, 68, 170, 200, 423, 426
FspBI	CTAG	3 cut(s)	128, 327, 350
GluI	GCNGC	6 cut(s)	21, 68, 170, 200, 423, 426
HaeIII	GGCC	4 cut(s)	254, 332, 624, 661
HapII	CCGG	1 cut(s)	602
Hin1II	CATG	4 cut(s)	571, 584, 638, 660
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	3 cut(s)	373, 523, 607
HpaII	CCGG	1 cut(s)	602
Hpy166II	GTNNAC	2 cut(s)	43, 357
Hpy188I	TCNGA	2 cut(s)	547, 612
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	2 cut(s)	43, 357
HpyAV	CCTTC	2 cut(s)	105, 114
HpyCH4V	TGCA	6 cut(s)	20, 70, 116, 169, 406, 503
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 26, 169, 577, 644, 658
HpyF3I	CTNAG	4 cut(s)	81, 108, 576, 648
Hsp92II	CATG	4 cut(s)	571, 584, 638, 660
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	53, 214
LmnI	GCTCC	3 cut(s)	316, 589, 604
Lsp1109I	GCAGC	6 cut(s)	32, 54, 181, 211, 434, 437
LweI	GCATC	3 cut(s)	38, 54, 512
MaeI	CTAG	3 cut(s)	128, 327, 350
MalI	GATC	2 cut(s)	55, 216
MboI	GATC	2 cut(s)	53, 214
MboII	GAAGA	3 cut(s)	277, 408, 698
MhlI	GDGCHC	1 cut(s)	601
MlsI	TGGCCA	3 cut(s)	254, 624, 661
MluCI	AATT	3 cut(s)	185, 210, 429
MluNI	TGGCCA	3 cut(s)	254, 624, 661
MnlI	CCTC	7 cut(s)	277, 285, 376, 472, 509, 582, 585
Mox20I	TGGCCA	3 cut(s)	254, 624, 661
MscI	TGGCCA	3 cut(s)	254, 624, 661
MseI	TTAA	1 cut(s)	261
Msp20I	TGGCCA	3 cut(s)	254, 624, 661
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	2 cut(s)	256, 603
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	6 cut(s)	17, 26, 169, 577, 644, 658
NciI	CCSGG	1 cut(s)	603
NdeI	CATATG	1 cut(s)	34
NdeII	GATC	2 cut(s)	53, 214
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	4 cut(s)	571, 584, 638, 660
NlaIV	GGNNCC	1 cut(s)	540
NspI	RCATGY	3 cut(s)	571, 584, 638
PaeI	GCATGC	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	1 cut(s)	690
PfeI	GAWTC	3 cut(s)	373, 523, 607
PflMI	CCANNNNNTGG	3 cut(s)	518, 548, 593
PkrI	GCNGC	6 cut(s)	22, 69, 171, 201, 424, 427
PpuMI	RGGWCCY	1 cut(s)	92
Psp5II	RGGWCCY	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	3 cut(s)	92, 330, 539
PspPPI	RGGWCCY	1 cut(s)	92
PstI	CTGCAG	2 cut(s)	22, 171
PstNI	CAGNNNCTG	1 cut(s)	166
RsaI	GTAC	3 cut(s)	16, 498, 641
RsaNI	GTAC	3 cut(s)	15, 497, 640
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	6 cut(s)	21, 68, 170, 200, 423, 426
Sau3AI	GATC	2 cut(s)	53, 214
Sau96I	GGNCC	3 cut(s)	92, 330, 539
ScaI	AGTACT	1 cut(s)	498
ScrFI	CCNGG	2 cut(s)	256, 603
SduI	GDGCHC	1 cut(s)	601
SetI	ASST	7 cut(s)	25, 94, 114, 129, 313, 520, 594
SfaNI	GCATC	3 cut(s)	38, 54, 512
SfcI	CTRYAG	2 cut(s)	18, 167
SinI	GGWCC	2 cut(s)	92, 539
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SphI	GCATGC	1 cut(s)	584
Sse9I	AATT	3 cut(s)	185, 210, 429
SsiI	CCGC	5 cut(s)	11, 278, 364, 436, 680
SspMI	CTAG	3 cut(s)	128, 327, 350
StyD4I	CCNGG	2 cut(s)	254, 601
TaqI	TCGA	1 cut(s)	693
TasI	AATT	3 cut(s)	185, 210, 429
TatI	WGTACW	1 cut(s)	496
TfiI	GAWTC	3 cut(s)	373, 523, 607
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	6 cut(s)	20, 67, 169, 199, 422, 425
TspDTI	ATGAA	3 cut(s)	287, 334, 507
TspRI	CASTG	1 cut(s)	408
Van91I	CCANNNNNTGG	3 cut(s)	518, 548, 593
VpaK11BI	GGWCC	2 cut(s)	92, 539
XapI	RAATTY	1 cut(s)	185
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	3 cut(s)	571, 584, 638
XspI	CTAG	3 cut(s)	128, 327, 350
ZrmI	AGTACT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.