Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Forward (+)

11778187 .. 11778942

Gene Structure 756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGATCAGCAAGGACATGGGCATCCAGCAACTATGGGAGTGGGGGGAACTGCAGCTCAAGCATCATATGGTGTGAACCCGTACGGATCAGTTGGGATGATGCAATCTCCTACTCAGCCAGCAGGTCCTGCCGCCTCTTCTCAGCTTGCACAACACCAGCTAGCTTATCAGCACATCCACCAGCAACAACAACAGCAACTGCAGCAACAACTCCAAAAATTTTGGGGAGAGCAGCATAAAGAAATTGATCAAACTAATGATTTCAAAAACCATAGTTTGCCATTGGCCAGGATTAAGAAGATTATGAAGGCGGATGAGGATGTGAGGATGATATCAGCCGAAGCTCCTGTCATATTTGCTAGGGCCTGTGAGATGTTCATTCTAGAGTTGACAATGCGGTCGTGGAATCACACAGAGGAGAACAAAAGAAGAACACTGCAAAAGAACGACATTGCAGCAGCAATTACGAGGACTGATATATTTGACTTTCTAGTTGATATCGTCCCAAGAGAGGATTTGAAAGACGAGGTGCTTGCATCAATCCCAAGAGGTGGGAATCCCCCAGTTGGGGGTCCATCTGATGGTCTTCCTTACTATTACATGCCTCCTCAGCATGCTTCGCAGGTTGGTGCTCCGGCGATGATAGTGGGAAGGCCTGTGATGGATCAGAATCTCTATGGCCAGCAAACACATCCGTACATTGCTCAACCAACATGGCCACAGCAACAACAGCATCCGCACGACGATCTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

252

Amino Acids

28.07

Weight (kDa)

5.92

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	81 - 155	2e-18	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	92 - 155	2e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	397
Acc36I	ACCTGC	2 cut(s)	113, 613
AccB7I	CCANNNNNTGG	2 cut(s)	551, 581
AciI	CCGC	4 cut(s)	132, 311, 397, 737
AclWI	GGATC	3 cut(s)	12, 94, 672
AcoI	YGGCCR	3 cut(s)	285, 679, 716
AcsI	RAATTY	1 cut(s)	218
AfaI	GTAC	2 cut(s)	83, 698
AfiI	CCNNNNNNNGG	7 cut(s)	511, 551, 566, 567, 568, 569, 581
AgsI	TTSAA	2 cut(s)	265, 520
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	5 cut(s)	56, 145, 160, 164, 344
AluI	AGCT	5 cut(s)	56, 145, 160, 164, 344
Alw21I	GWGCWC	1 cut(s)	634
AlwI	GGATC	3 cut(s)	12, 94, 672
AlwNI	CAGNNNCTG	2 cut(s)	128, 199
AoxI	GGCC	5 cut(s)	285, 363, 653, 679, 716
ApeKI	GCWGC	5 cut(s)	53, 202, 232, 455, 458
ApoI	RAATTY	1 cut(s)	218
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AspS9I	GGNCC	3 cut(s)	125, 363, 572
AsuNHI	GCTAGC	1 cut(s)	160
AvaII	GGWCC	2 cut(s)	125, 572
BalI	TGGCCA	3 cut(s)	287, 681, 718
BbsI	GAAGAC	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	634
BbvCI	CCTCAGC	1 cut(s)	609
BbvI	GCAGC	5 cut(s)	65, 214, 244, 467, 470
BccI	CCATC	3 cut(s)	575, 583, 655
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	1 cut(s)	289
BclI	TGATCA	1 cut(s)	247
BfaI	CTAG	4 cut(s)	161, 360, 383, 491
BfmI	CTRYAG	2 cut(s)	51, 200
BfuAI	ACCTGC	2 cut(s)	113, 613
BisI	GCNGC	6 cut(s)	54, 132, 203, 233, 456, 459
BlsI	GCNGC	6 cut(s)	55, 133, 204, 234, 457, 460
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	2 cut(s)	125, 572
BmgT120I	GGNCC	3 cut(s)	125, 363, 572
BmiI	GGNNCC	1 cut(s)	573
BmrFI	CCNGG	1 cut(s)	289
BmrI	ACTGGG	1 cut(s)	557
BmsI	GCATC	5 cut(s)	31, 71, 90, 545, 742
BmtI	GCTAGC	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	557
BpiI	GAAGAC	1 cut(s)	578
Bpu10I	CCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	669
Bsc4I	CCNNNNNNNGG	7 cut(s)	511, 551, 566, 567, 568, 569, 581
Bse1I	ACTGG	1 cut(s)	563
Bse3DI	GCAATG	2 cut(s)	450, 699
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	289
BseGI	GGATG	8 cut(s)	22, 102, 174, 319, 325, 333, 691, 733
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	7 cut(s)	511, 551, 566, 567, 568, 569, 581
BseMI	GCAATG	2 cut(s)	450, 699
BseMII	CTCAG	3 cut(s)	128, 155, 623
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	2 cut(s)	431, 597
BseXI	GCAGC	5 cut(s)	65, 214, 244, 467, 470
Bsh1285I	CGRYCG	1 cut(s)	401
BshFI	GGCC	5 cut(s)	287, 365, 655, 681, 718
BsiEI	CGRYCG	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	634
BsiSI	CCGG	1 cut(s)	635
BsiWI	CGTACG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	7 cut(s)	511, 551, 566, 567, 568, 569, 581
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	5 cut(s)	287, 365, 655, 681, 718
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp143I	GATC	5 cut(s)	4, 86, 247, 664, 745
BspACI	CCGC	4 cut(s)	132, 311, 397, 737
BspANI	GGCC	5 cut(s)	287, 365, 655, 681, 718
BspCNI	CTCAG	3 cut(s)	127, 154, 622
BspLI	GGNNCC	1 cut(s)	573
BspMAI	CTGCAG	2 cut(s)	55, 204
BspMI	ACCTGC	2 cut(s)	113, 613
BspOI	GCTAGC	1 cut(s)	164
BspPI	GGATC	3 cut(s)	12, 94, 672
BsrDI	GCAATG	2 cut(s)	450, 699
BsrI	ACTGG	1 cut(s)	563
BssMI	GATC	5 cut(s)	4, 86, 247, 664, 745
Bst2UI	CCWGG	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	6 cut(s)	120, 147, 162, 534, 615, 683
BstDEI	CTNAG	3 cut(s)	114, 141, 609
BstF5I	GGATG	8 cut(s)	22, 102, 174, 319, 325, 333, 691, 733
BstKTI	GATC	5 cut(s)	7, 89, 250, 667, 748
BstMBI	GATC	5 cut(s)	4, 86, 247, 664, 745
BstMCI	CGRYCG	1 cut(s)	401
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 128, 202, 610, 619, 730
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	2 cut(s)	604, 617
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	2 cut(s)	51, 200
BstV1I	GCAGC	5 cut(s)	65, 214, 244, 467, 470
BstV2I	GAAGAC	1 cut(s)	578
BsuRI	GGCC	5 cut(s)	287, 365, 655, 681, 718
BtgZI	GCGATG	1 cut(s)	653
BtsCI	GGATG	8 cut(s)	22, 102, 174, 319, 325, 333, 691, 733
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	1 cut(s)	434
BveI	ACCTGC	2 cut(s)	113, 613
Cac8I	GCNNGC	6 cut(s)	120, 147, 162, 534, 615, 683
CaiI	CAGNNNCTG	2 cut(s)	128, 199
Cfr13I	GGNCC	3 cut(s)	125, 363, 572
Csp6I	GTAC	2 cut(s)	82, 697
CviAII	CATG	4 cut(s)	17, 601, 614, 714
CviQI	GTAC	2 cut(s)	82, 697
DdeI	CTNAG	3 cut(s)	114, 141, 609
DpnI	GATC	5 cut(s)	6, 88, 249, 666, 747
DpnII	GATC	5 cut(s)	4, 86, 247, 664, 745
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	3 cut(s)	285, 679, 716
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
EciI	GGCGGA	1 cut(s)	326
Eco147I	AGGCCT	1 cut(s)	655
Eco32I	GATATC	2 cut(s)	333, 499
Eco47I	GGWCC	2 cut(s)	125, 572
EcoO109I	RGGNCCY	2 cut(s)	125, 363
EcoRII	CCWGG	1 cut(s)	287
EcoRV	GATATC	2 cut(s)	333, 499
FaeI	CATG	4 cut(s)	20, 604, 617, 717
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	4 cut(s)	16, 600, 613, 713
FauNDI	CATATG	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	6 cut(s)	54, 132, 203, 233, 456, 459
FokI	GGATG	8 cut(s)	9, 109, 161, 326, 332, 340, 678, 720
Fsp4HI	GCNGC	6 cut(s)	54, 132, 203, 233, 456, 459
FspBI	CTAG	4 cut(s)	161, 360, 383, 491
GluI	GCNGC	6 cut(s)	54, 132, 203, 233, 456, 459
HaeIII	GGCC	5 cut(s)	287, 365, 655, 681, 718
HapII	CCGG	1 cut(s)	635
Hin1II	CATG	4 cut(s)	20, 604, 617, 717
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	3 cut(s)	406, 556, 670
HpaII	CCGG	1 cut(s)	635
Hpy166II	GTNNAC	2 cut(s)	76, 390
Hpy188I	TCNGA	2 cut(s)	580, 669
Hpy188III	TCNNGA	2 cut(s)	383, 749
Hpy8I	GTNNAC	2 cut(s)	76, 390
Hpy99I	CGWCG	1 cut(s)	746
HpyAV	CCTTC	2 cut(s)	301, 645
HpyCH4V	TGCA	7 cut(s)	53, 103, 149, 202, 439, 455, 536
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 128, 202, 610, 619, 730
HpyF3I	CTNAG	3 cut(s)	114, 141, 609
Hsp92II	CATG	4 cut(s)	20, 604, 617, 717
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	4, 86, 247, 664, 745
LmnI	GCTCC	2 cut(s)	349, 637
Lsp1109I	GCAGC	5 cut(s)	65, 214, 244, 467, 470
LweI	GCATC	5 cut(s)	31, 71, 90, 545, 742
MaeI	CTAG	4 cut(s)	161, 360, 383, 491
MalI	GATC	5 cut(s)	6, 88, 249, 666, 747
MboI	GATC	5 cut(s)	4, 86, 247, 664, 745
MboII	GAAGA	4 cut(s)	129, 310, 441, 578
MhlI	GDGCHC	1 cut(s)	634
MlsI	TGGCCA	3 cut(s)	287, 681, 718
MluCI	AATT	3 cut(s)	218, 243, 462
MluNI	TGGCCA	3 cut(s)	287, 681, 718
Mox20I	TGGCCA	3 cut(s)	287, 681, 718
MscI	TGGCCA	3 cut(s)	287, 681, 718
MseI	TTAA	1 cut(s)	294
Msp20I	TGGCCA	3 cut(s)	287, 681, 718
MspI	CCGG	1 cut(s)	635
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	6 cut(s)	59, 128, 202, 610, 619, 730
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	5 cut(s)	4, 86, 247, 664, 745
NheI	GCTAGC	1 cut(s)	160
NlaIII	CATG	4 cut(s)	20, 604, 617, 717
NlaIV	GGNNCC	1 cut(s)	573
NspI	RCATGY	2 cut(s)	604, 617
PaeI	GCATGC	1 cut(s)	617
PceI	AGGCCT	1 cut(s)	655
PfeI	GAWTC	3 cut(s)	406, 556, 670
Pfl23II	CGTACG	1 cut(s)	81
PflMI	CCANNNNNTGG	2 cut(s)	551, 581
PkrI	GCNGC	6 cut(s)	55, 133, 204, 234, 457, 460
PpuMI	RGGWCCY	1 cut(s)	125
Psp5II	RGGWCCY	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspLI	CGTACG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	573
PspPI	GGNCC	3 cut(s)	125, 363, 572
PspPPI	RGGWCCY	1 cut(s)	125
PstI	CTGCAG	2 cut(s)	55, 204
PstNI	CAGNNNCTG	2 cut(s)	128, 199
RsaI	GTAC	2 cut(s)	83, 698
RsaNI	GTAC	2 cut(s)	82, 697
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	6 cut(s)	54, 132, 203, 233, 456, 459
Sau3AI	GATC	5 cut(s)	4, 86, 247, 664, 745
Sau96I	GGNCC	3 cut(s)	125, 363, 572
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	634
SetI	ASST	9 cut(s)	58, 127, 147, 162, 166, 346, 531, 553, 627
SfaNI	GCATC	5 cut(s)	31, 71, 90, 545, 742
SfcI	CTRYAG	2 cut(s)	51, 200
SinI	GGWCC	2 cut(s)	125, 572
SmlI	CTYRAG	2 cut(s)	57, 749
SmoI	CTYRAG	2 cut(s)	57, 749
SphI	GCATGC	1 cut(s)	617
Sse9I	AATT	3 cut(s)	218, 243, 462
SseBI	AGGCCT	1 cut(s)	655
SsiI	CCGC	4 cut(s)	132, 311, 397, 737
SspMI	CTAG	4 cut(s)	161, 360, 383, 491
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	1 cut(s)	287
TasI	AATT	3 cut(s)	218, 243, 462
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	3 cut(s)	406, 556, 670
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	441
TseI	GCWGC	5 cut(s)	53, 202, 232, 455, 458
TspDTI	ATGAA	2 cut(s)	320, 367
TspGWI	ACGGA	2 cut(s)	99, 684
TspRI	CASTG	1 cut(s)	441
Van91I	CCANNNNNTGG	2 cut(s)	551, 581
VpaK11BI	GGWCC	2 cut(s)	125, 572
XapI	RAATTY	1 cut(s)	218
XbaI	TCTAGA	1 cut(s)	382
XceI	RCATGY	2 cut(s)	604, 617
XspI	CTAG	4 cut(s)	161, 360, 383, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.