Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005844.1

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Forward (+)

18368 .. 20862

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005844.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atgggtttccgattgcctcgaattgccaacacaaagaaagcagatatcccaagaggccactttgtggtatatgttggagagagccagaagaaacgatttgtggttccaatatcatatttgaaccaaccttcgtttcaggatttgctgagtcaagctgaagaagaattcggataccatcatccaatgggtggtatcacaattccttgcagtcaagataccttccttgatgtcacttcccgccttggtgtgatggatcaggaagggcatgggcatccaacaacaatgggagtcccaggtggtgcaggtcaagcatcatatggtgtgaacccatatcagcctagccaaatgatgggactctctccaactggatcgcacatccaccagcaacaactccaaaacttttggtcaggtcagtatcaagaaattgagcaggctaatgatttcaagaaccatagtttaccattggccaggattaagaagattatgaaggctgatgaggatgtaaggatgatatctgctgaagctccggtcatattttccagggcctgtgagatgtttgttctggagttgacactacggtcttggaaccacacagaggagaacaaaaggagaacattgcaaaagaatgacattgcggcagcaattacaaggactgatatatttgactttctagttgatatcgtccccagagaggatttgaaagatgaggttcttgcatcaatcccaagaggtgggaatgttccagttgtcggtccagctgatggtcttccttactattacatgcctgctcaacatccaccacaggttggtgctcctgggatgatggtgggaaagcctgtgatggatcaaaatatgtatggccaaccgacacatccatacatggctcagccagcttggcctcagcaacaacagccgcacaaagattctgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

310

Amino Acids

34.71

Weight (kDa)

6.05

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	577
Acc36I	ACCTGC	1 cut(s)	293
AccB7I	CCANNNNNTGG	6 cut(s)	64, 188, 349, 731, 761, 806
AciI	CCGC	3 cut(s)	238, 635, 914
AclWI	GGATC	3 cut(s)	261, 376, 852
AcoI	YGGCCR	2 cut(s)	465, 859
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	2 cut(s)	177, 540
AdeI	CACNNNGTG	1 cut(s)	64
AfiI	CCNNNNNNNGG	9 cut(s)	64, 188, 349, 595, 691, 731, 749, 761, 806
AgsI	TTSAA	3 cut(s)	121, 445, 700
AjnI	CCWGG	4 cut(s)	292, 467, 539, 814
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	4 cut(s)	155, 524, 758, 893
AluI	AGCT	4 cut(s)	155, 524, 758, 893
Alw21I	GWGCWC	1 cut(s)	814
AlwI	GGATC	3 cut(s)	261, 376, 852
AlwNI	CAGNNNCTG	1 cut(s)	546
AoxI	GGCC	5 cut(s)	55, 465, 543, 859, 896
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	543, 752
AvaII	GGWCC	1 cut(s)	752
BalI	TGGCCA	2 cut(s)	467, 861
BbsI	GAAGAC	1 cut(s)	758
Bbv12I	GWGCWC	1 cut(s)	814
BbvCI	CCTCAGC	1 cut(s)	900
BbvI	GCAGC	1 cut(s)	650
BccI	CCATC	6 cut(s)	183, 244, 343, 755, 817, 835
BciT130I	CCWGG	4 cut(s)	294, 469, 541, 816
BciVI	GTATCC	1 cut(s)	164
BfaI	CTAG	2 cut(s)	339, 671
BfuAI	ACCTGC	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	164
BglI	GCCNNNNNGGC	1 cut(s)	895
BisI	GCNGC	3 cut(s)	636, 639, 914
BlpI	GCTNAGC	1 cut(s)	885
BlsI	GCNGC	3 cut(s)	637, 640, 915
Bme1390I	CCNGG	4 cut(s)	294, 469, 541, 816
Bme18I	GGWCC	1 cut(s)	752
BmgT120I	GGNCC	2 cut(s)	543, 752
BmiI	GGNNCC	2 cut(s)	105, 587
BmrFI	CCNGG	4 cut(s)	294, 469, 541, 816
BmsI	GCATC	3 cut(s)	280, 320, 725
BpiI	GAAGAC	1 cut(s)	758
BpmI	CTGGAG	1 cut(s)	584
Bpu10I	CCTNAGC	1 cut(s)	900
Bpu1102I	GCTNAGC	1 cut(s)	885
BsaJI	CCNNGG	4 cut(s)	241, 292, 540, 815
BsaWI	WCCGGW	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	9 cut(s)	64, 188, 349, 595, 691, 731, 749, 761, 806
Bse1I	ACTGG	2 cut(s)	370, 743
Bse3DI	GCAATG	2 cut(s)	614, 630
BseBI	CCWGG	4 cut(s)	294, 469, 541, 816
BseDI	CCNNGG	4 cut(s)	241, 292, 540, 815
BseGI	GGATG	8 cut(s)	178, 271, 375, 505, 513, 793, 825, 871
BseLI	CCNNNNNNNGG	9 cut(s)	64, 188, 349, 595, 691, 731, 749, 761, 806
BseMI	GCAATG	2 cut(s)	614, 630
BseMII	CTCAG	4 cut(s)	137, 899, 914, 918
BseNI	ACTGG	2 cut(s)	370, 743
BseRI	GAGGAG	1 cut(s)	611
BseXI	GCAGC	1 cut(s)	650
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	5 cut(s)	57, 467, 545, 861, 898
BsiHKAI	GWGCWC	1 cut(s)	814
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	3 cut(s)	275, 366, 668
BslI	CCNNNNNNNGG	9 cut(s)	64, 188, 349, 595, 691, 731, 749, 761, 806
BsmFI	GGGAC	3 cut(s)	275, 366, 668
BsnI	GGCC	5 cut(s)	57, 467, 545, 861, 898
Bsp1286I	GDGCHC	1 cut(s)	814
Bsp143I	GATC	3 cut(s)	253, 368, 844
Bsp1720I	GCTNAGC	1 cut(s)	885
BspACI	CCGC	3 cut(s)	238, 635, 914
BspANI	GGCC	5 cut(s)	57, 467, 545, 861, 898
BspCNI	CTCAG	4 cut(s)	138, 898, 913, 919
BspLI	GGNNCC	2 cut(s)	105, 587
BspMI	ACCTGC	1 cut(s)	293
BspPI	GGATC	3 cut(s)	261, 376, 852
BsrDI	GCAATG	2 cut(s)	614, 630
BsrI	ACTGG	2 cut(s)	370, 743
BssECI	CCNNGG	4 cut(s)	241, 292, 540, 815
BssMI	GATC	3 cut(s)	253, 368, 844
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	4 cut(s)	294, 469, 541, 816
Bst4CI	ACNGT	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	432, 786, 891
BstDEI	CTNAG	4 cut(s)	146, 885, 900, 927
BstF5I	GGATG	8 cut(s)	178, 271, 375, 505, 513, 793, 825, 871
BstKTI	GATC	3 cut(s)	256, 371, 847
BstMBI	GATC	3 cut(s)	253, 368, 844
BstMWI	GCNNNNNNNGC	4 cut(s)	308, 890, 895, 910
BstNI	CCWGG	4 cut(s)	294, 469, 541, 816
BstNSI	RCATGY	1 cut(s)	784
BstSCI	CCNGG	4 cut(s)	292, 467, 539, 814
BstV1I	GCAGC	1 cut(s)	650
BstV2I	GAAGAC	1 cut(s)	758
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	5 cut(s)	57, 467, 545, 861, 898
BtsCI	GGATG	8 cut(s)	178, 271, 375, 505, 513, 793, 825, 871
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	3 cut(s)	432, 786, 891
CaiI	CAGNNNCTG	1 cut(s)	546
Cfr13I	GGNCC	2 cut(s)	543, 752
CviAII	CATG	3 cut(s)	266, 781, 880
DdeI	CTNAG	4 cut(s)	146, 885, 900, 927
DpnI	GATC	3 cut(s)	255, 370, 846
DpnII	GATC	3 cut(s)	253, 368, 844
DraIII	CACNNNGTG	1 cut(s)	64
DrdI	GACNNNNNNGTC	1 cut(s)	577
DseDI	GACNNNNNNGTC	1 cut(s)	577
EaeI	YGGCCR	2 cut(s)	465, 859
Eco130I	CCWWGG	1 cut(s)	241
Eco32I	GATATC	3 cut(s)	46, 513, 679
Eco47I	GGWCC	1 cut(s)	752
Eco57I	CTGAAG	2 cut(s)	177, 540
EcoO109I	RGGNCCY	1 cut(s)	543
EcoRI	GAATTC	1 cut(s)	164
EcoRII	CCWGG	4 cut(s)	292, 467, 539, 814
EcoRV	GATATC	3 cut(s)	46, 513, 679
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	3 cut(s)	269, 784, 883
FaqI	GGGAC	3 cut(s)	275, 366, 668
FatI	CATG	3 cut(s)	265, 780, 879
FauI	CCCGC	1 cut(s)	245
FauNDI	CATATG	1 cut(s)	316
Fnu4HI	GCNGC	3 cut(s)	636, 639, 914
FokI	GGATG	8 cut(s)	165, 258, 362, 512, 520, 780, 832, 858
Fsp4HI	GCNGC	3 cut(s)	636, 639, 914
FspBI	CTAG	2 cut(s)	339, 671
GluI	GCNGC	3 cut(s)	636, 639, 914
GsuI	CTGGAG	1 cut(s)	584
HaeIII	GGCC	5 cut(s)	57, 467, 545, 861, 898
HapII	CCGG	1 cut(s)	527
Hin1II	CATG	3 cut(s)	269, 784, 883
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HinfI	GANTC	4 cut(s)	148, 288, 354, 923
HpaII	CCGG	1 cut(s)	527
Hpy166II	GTNNAC	3 cut(s)	325, 458, 570
Hpy188I	TCNGA	3 cut(s)	11, 170, 928
Hpy188III	TCNNGA	6 cut(s)	137, 212, 257, 419, 445, 563
Hpy8I	GTNNAC	3 cut(s)	325, 458, 570
HpyAV	CCTTC	4 cut(s)	138, 229, 254, 481
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4V	TGCA	4 cut(s)	207, 302, 619, 716
HpyF10VI	GCNNNNNNNGC	4 cut(s)	308, 890, 895, 910
HpyF3I	CTNAG	4 cut(s)	146, 885, 900, 927
Hsp92II	CATG	3 cut(s)	269, 784, 883
Kzo9I	GATC	3 cut(s)	253, 368, 844
LmnI	GCTCC	2 cut(s)	529, 817
Lsp1109I	GCAGC	1 cut(s)	650
LweI	GCATC	3 cut(s)	280, 320, 725
MaeI	CTAG	2 cut(s)	339, 671
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	3 cut(s)	255, 370, 846
MboI	GATC	3 cut(s)	253, 368, 844
MboII	GAAGA	5 cut(s)	100, 170, 173, 490, 758
MhlI	GDGCHC	1 cut(s)	814
MlsI	TGGCCA	2 cut(s)	467, 861
MluCI	AATT	5 cut(s)	21, 164, 198, 423, 642
MluNI	TGGCCA	2 cut(s)	467, 861
MlyI	GAGTC	3 cut(s)	157, 297, 348
MmeI	TCCRAC	3 cut(s)	55, 299, 386
MnlI	CCTC	8 cut(s)	27, 47, 490, 589, 685, 700, 722, 909
Mox20I	TGGCCA	2 cut(s)	467, 861
MscI	TGGCCA	2 cut(s)	467, 861
MseI	TTAA	1 cut(s)	474
Msp20I	TGGCCA	2 cut(s)	467, 861
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	4 cut(s)	294, 469, 541, 816
MvaI	CCWGG	4 cut(s)	294, 469, 541, 816
MwoI	GCNNNNNNNGC	4 cut(s)	308, 890, 895, 910
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	3 cut(s)	253, 368, 844
NlaIII	CATG	3 cut(s)	269, 784, 883
NlaIV	GGNNCC	2 cut(s)	105, 587
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	784
PfeI	GAWTC	1 cut(s)	923
PflMI	CCANNNNNTGG	6 cut(s)	64, 188, 349, 731, 761, 806
PkrI	GCNGC	3 cut(s)	637, 640, 915
PleI	GAGTC	3 cut(s)	156, 296, 348
PpsI	GAGTC	3 cut(s)	156, 296, 348
Psp6I	CCWGG	4 cut(s)	292, 467, 539, 814
PspGI	CCWGG	4 cut(s)	292, 467, 539, 814
PspN4I	GGNNCC	2 cut(s)	105, 587
PspPI	GGNCC	2 cut(s)	543, 752
PstNI	CAGNNNCTG	1 cut(s)	546
PvuII	CAGCTG	1 cut(s)	758
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	3 cut(s)	636, 639, 914
Sau3AI	GATC	3 cut(s)	253, 368, 844
Sau96I	GGNCC	2 cut(s)	543, 752
SchI	GAGTC	3 cut(s)	157, 297, 348
ScrFI	CCNGG	4 cut(s)	294, 469, 541, 816
SduI	GDGCHC	1 cut(s)	814
SfaNI	GCATC	3 cut(s)	280, 320, 725
SinI	GGWCC	1 cut(s)	752
Sse9I	AATT	5 cut(s)	21, 164, 198, 423, 642
SsiI	CCGC	3 cut(s)	238, 635, 914
SspMI	CTAG	2 cut(s)	339, 671
StyD4I	CCNGG	4 cut(s)	292, 467, 539, 814
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	579
TaqI	TCGA	1 cut(s)	19
TaqII	GACCGA	1 cut(s)	740
TasI	AATT	5 cut(s)	21, 164, 198, 423, 642
TauI	GCSGC	2 cut(s)	638, 916
TfiI	GAWTC	1 cut(s)	923
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	500
Van91I	CCANNNNNTGG	6 cut(s)	64, 188, 349, 731, 761, 806
VpaK11BI	GGWCC	1 cut(s)	752
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	1 cut(s)	784
XspI	CTAG	2 cut(s)	339, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.