Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Forward (+)

12042427 .. 12046186

Gene Structure 3760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G152500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGATCAGCAGGGGCATGGGCATCCCACAACAATGGGAGTGGCTGGTAGTGCAGCTCAAGCATCCTATGGTGTGAACCCATATCAGTCTGGCCAAATGATGGGGCTCTCTCCCACTGGATCAGTTGGATTGATGCAATCTCCTACTCAGCCGGCAGGTCCTCCAGCCTCTTCTCAGCTTGCACAACACCAACTAGCTTATCAGCACATCCACCAGCAACAACAACAGCAACTACAGCAACAACTCCAAAGTTTTTGGGCAGAACAGTATCAAGAAATTGAGGCGGTTATGGATTTCAAGAACCACAGTTTGCCATTGGCCAGGATTAAAAAGATTATGAAGGCTGATGAGGATGTGAGGATGATCTCAGCCGAAGCTCCAGTCATATTTGCCAGGGCCTGTGAGATGTTCATTCTAGAGTTGACACTGCGGTCTTGGAATCACACAGAGGAGAACAAAAGAAGAACACTGCAAAAGAATGACATTGCCGCAGCAATTACGCGGACTGATATATTTGATTTTCTGGTTGATATCGTCCCGAGAGAGGATTTGAAAGATGAGGTACTTGCGTCAATCCCAAGAGGTGGGAATCTTCCGGTTGGAAGTTCGACTGATGGTGTGCCTTACTATTACATGCCTGCTCAGCATGCTCCACAGGTTGGTGCTCCGGGGATGATAGTGGGAAAGCCTGTTATGGATCAAACTCTTTATGGCCAACAGACACATCCCTACATTGCTCAGCCAACATGGCCACAGCAACAGCAGCCGCACAAAGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

261

Amino Acids

28.87

Weight (kDa)

5.89

Isoelectric Point (pI)

61.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
Acc36I	ACCTGC	1 cut(s)	146
AccB7I	CCANNNNNTGG	3 cut(s)	100, 584, 659
AccII	CGCG	1 cut(s)	502
AciI	CCGC	5 cut(s)	284, 430, 489, 502, 767
AclWI	GGATC	3 cut(s)	12, 127, 705
AcoI	YGGCCR	4 cut(s)	91, 318, 712, 749
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	4 cut(s)	100, 544, 584, 659
AgsI	TTSAA	2 cut(s)	298, 553
AjnI	CCWGG	2 cut(s)	320, 392
AluBI	AGCT	4 cut(s)	56, 178, 197, 377
AluI	AGCT	4 cut(s)	56, 178, 197, 377
Alw21I	GWGCWC	1 cut(s)	667
AlwI	GGATC	3 cut(s)	12, 127, 705
AlwNI	CAGNNNCTG	1 cut(s)	399
Ama87I	CYCGRG	1 cut(s)	538
AoxI	GGCC	5 cut(s)	91, 318, 396, 712, 749
ApeKI	GCWGC	3 cut(s)	53, 491, 763
ArsI	GACNNNNNNTTYG	2 cut(s)	366, 398
AspS9I	GGNCC	2 cut(s)	158, 396
AsuC2I	CCSGG	1 cut(s)	669
AvaI	CYCGRG	1 cut(s)	538
AvaII	GGWCC	1 cut(s)	158
BaeI	ACNNNNGTAYC	2 cut(s)	554, 587
BalI	TGGCCA	4 cut(s)	93, 320, 714, 751
BanII	GRGCYC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	3 cut(s)	65, 503, 775
BccI	CCATC	2 cut(s)	94, 608
BciT130I	CCWGG	2 cut(s)	322, 394
BcnI	CCSGG	1 cut(s)	669
BfaI	CTAG	2 cut(s)	194, 416
BfmI	CTRYAG	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	146
BglI	GCCNNNNNGGC	1 cut(s)	748
BisI	GCNGC	5 cut(s)	54, 489, 492, 764, 767
BlpI	GCTNAGC	2 cut(s)	642, 738
BlsI	GCNGC	5 cut(s)	55, 490, 493, 765, 768
Bme1390I	CCNGG	3 cut(s)	322, 394, 669
Bme18I	GGWCC	1 cut(s)	158
BmeT110I	CYCGRG	1 cut(s)	538
BmgT120I	GGNCC	2 cut(s)	158, 396
BmrFI	CCNGG	3 cut(s)	322, 394, 669
BmsI	GCATC	3 cut(s)	31, 71, 123
BpmI	CTGGAG	2 cut(s)	147, 363
Bpu1102I	GCTNAGC	2 cut(s)	642, 738
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	393, 668
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 544, 584, 659
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	121, 380
Bse3DI	GCAATG	2 cut(s)	483, 732
BseBI	CCWGG	2 cut(s)	322, 394
BseDI	CCNNGG	2 cut(s)	393, 668
BseGI	GGATG	7 cut(s)	22, 62, 207, 358, 366, 678, 724
BseLI	CCNNNNNNNGG	4 cut(s)	100, 544, 584, 659
BseMI	GCAATG	2 cut(s)	483, 732
BseMII	CTCAG	5 cut(s)	161, 188, 381, 656, 752
BseNI	ACTGG	2 cut(s)	121, 380
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	3 cut(s)	65, 503, 775
BsgI	GTGCAG	1 cut(s)	72
Bsh1236I	CGCG	1 cut(s)	502
BshFI	GGCC	5 cut(s)	93, 320, 398, 714, 751
BsiHKAI	GWGCWC	1 cut(s)	667
BsiHKCI	CYCGRG	1 cut(s)	538
BsiSI	CCGG	3 cut(s)	152, 596, 668
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	4 cut(s)	100, 544, 584, 659
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	5 cut(s)	93, 320, 398, 714, 751
BsoBI	CYCGRG	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	108, 667
Bsp143I	GATC	4 cut(s)	4, 119, 363, 697
Bsp1720I	GCTNAGC	2 cut(s)	642, 738
BspACI	CCGC	5 cut(s)	284, 430, 489, 502, 767
BspANI	GGCC	5 cut(s)	93, 320, 398, 714, 751
BspCNI	CTCAG	5 cut(s)	160, 187, 380, 655, 751
BspFNI	CGCG	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	3 cut(s)	12, 127, 705
BsrDI	GCAATG	2 cut(s)	483, 732
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	121, 380
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	393, 668
BssMI	GATC	4 cut(s)	4, 119, 363, 697
Bst2UI	CCWGG	2 cut(s)	322, 394
Bst4CI	ACNGT	2 cut(s)	267, 308
Bst6I	CTCTTC	1 cut(s)	175
BstC8I	GCNNGC	4 cut(s)	153, 180, 639, 648
BstDEI	CTNAG	5 cut(s)	147, 174, 367, 642, 738
BstF5I	GGATG	7 cut(s)	22, 62, 207, 358, 366, 678, 724
BstFNI	CGCG	1 cut(s)	502
BstKTI	GATC	4 cut(s)	7, 122, 366, 700
BstMBI	GATC	4 cut(s)	4, 119, 363, 697
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 59, 235, 643, 647, 748, 763
BstNI	CCWGG	2 cut(s)	322, 394
BstNSI	RCATGY	2 cut(s)	637, 650
BstSCI	CCNGG	3 cut(s)	320, 392, 667
BstSFI	CTRYAG	1 cut(s)	233
BstUI	CGCG	1 cut(s)	502
BstV1I	GCAGC	3 cut(s)	65, 503, 775
BstXI	CCANNNNNNTGG	1 cut(s)	34
BsuRI	GGCC	5 cut(s)	93, 320, 398, 714, 751
BtsCI	GGATG	7 cut(s)	22, 62, 207, 358, 366, 678, 724
BtsI	GCAGTG	2 cut(s)	425, 467
BtsIMutI	CAGTG	3 cut(s)	114, 425, 467
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	4 cut(s)	153, 180, 639, 648
CaiI	CAGNNNCTG	1 cut(s)	399
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	2 cut(s)	158, 396
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	563
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	4 cut(s)	17, 634, 647, 747
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	5 cut(s)	147, 174, 367, 642, 738
DpnI	GATC	4 cut(s)	6, 121, 365, 699
DpnII	GATC	4 cut(s)	4, 119, 363, 697
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	4 cut(s)	91, 318, 712, 749
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	538
EcoO109I	RGGNCCY	2 cut(s)	158, 396
EcoRII	CCWGG	2 cut(s)	320, 392
EcoRV	GATATC	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	108
FaeI	CATG	4 cut(s)	20, 637, 650, 750
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	4 cut(s)	16, 633, 646, 746
Fnu4HI	GCNGC	5 cut(s)	54, 489, 492, 764, 767
FokI	GGATG	7 cut(s)	9, 49, 194, 365, 373, 685, 711
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	5 cut(s)	54, 489, 492, 764, 767
FspBI	CTAG	2 cut(s)	194, 416
GluI	GCNGC	5 cut(s)	54, 489, 492, 764, 767
GsuI	CTGGAG	2 cut(s)	147, 363
HaeIII	GGCC	5 cut(s)	93, 320, 398, 714, 751
HapII	CCGG	3 cut(s)	152, 596, 668
HgaI	GACGC	1 cut(s)	558
Hin1II	CATG	4 cut(s)	20, 637, 650, 750
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	3 cut(s)	439, 589, 776
HpaII	CCGG	3 cut(s)	152, 596, 668
Hpy166II	GTNNAC	2 cut(s)	76, 423
Hpy188III	TCNNGA	5 cut(s)	272, 298, 416, 538, 780
Hpy8I	GTNNAC	2 cut(s)	76, 423
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	2 cut(s)	267, 308
HpyCH4V	TGCA	4 cut(s)	53, 136, 182, 472
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 59, 235, 643, 647, 748, 763
HpyF3I	CTNAG	5 cut(s)	147, 174, 367, 642, 738
Hsp92II	CATG	4 cut(s)	20, 637, 650, 750
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Kzo9I	GATC	4 cut(s)	4, 119, 363, 697
LmnI	GCTCC	3 cut(s)	382, 655, 670
Lsp1109I	GCAGC	3 cut(s)	65, 503, 775
LweI	GCATC	3 cut(s)	31, 71, 123
MaeI	CTAG	2 cut(s)	194, 416
MalI	GATC	4 cut(s)	6, 121, 365, 699
MboI	GATC	4 cut(s)	4, 119, 363, 697
MboII	GAAGA	3 cut(s)	162, 474, 584
MhlI	GDGCHC	2 cut(s)	108, 667
MlsI	TGGCCA	4 cut(s)	93, 320, 714, 751
MluCI	AATT	2 cut(s)	276, 495
MluNI	TGGCCA	4 cut(s)	93, 320, 714, 751
MmeI	TCCRAC	2 cut(s)	106, 580
MnlI	CCTC	9 cut(s)	171, 178, 274, 343, 351, 442, 538, 553, 575
Mox20I	TGGCCA	4 cut(s)	93, 320, 714, 751
MroNI	GCCGGC	1 cut(s)	151
MscI	TGGCCA	4 cut(s)	93, 320, 714, 751
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	32
Msp20I	TGGCCA	4 cut(s)	93, 320, 714, 751
MspI	CCGG	3 cut(s)	152, 596, 668
MspR9I	CCNGG	3 cut(s)	322, 394, 669
MvaI	CCWGG	2 cut(s)	322, 394
MvnI	CGCG	1 cut(s)	502
MwoI	GCNNNNNNNGC	7 cut(s)	50, 59, 235, 643, 647, 748, 763
NaeI	GCCGGC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	669
NdeII	GATC	4 cut(s)	4, 119, 363, 697
NgoMIV	GCCGGC	1 cut(s)	151
NlaIII	CATG	4 cut(s)	20, 637, 650, 750
NspI	RCATGY	2 cut(s)	637, 650
PaeI	GCATGC	1 cut(s)	650
PdiI	GCCGGC	1 cut(s)	153
PfeI	GAWTC	3 cut(s)	439, 589, 776
PflMI	CCANNNNNTGG	3 cut(s)	100, 584, 659
PkrI	GCNGC	5 cut(s)	55, 490, 493, 765, 768
PpuMI	RGGWCCY	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	2 cut(s)	320, 392
PspGI	CCWGG	2 cut(s)	320, 392
PspPI	GGNCC	2 cut(s)	158, 396
PspPPI	RGGWCCY	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	399
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	5 cut(s)	54, 489, 492, 764, 767
Sau3AI	GATC	4 cut(s)	4, 119, 363, 697
Sau96I	GGNCC	2 cut(s)	158, 396
ScrFI	CCNGG	3 cut(s)	322, 394, 669
SduI	GDGCHC	2 cut(s)	108, 667
SetI	ASST	8 cut(s)	58, 160, 180, 199, 379, 564, 586, 660
SfaNI	GCATC	3 cut(s)	31, 71, 123
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SphI	GCATGC	1 cut(s)	650
Sse9I	AATT	2 cut(s)	276, 495
SsiI	CCGC	5 cut(s)	284, 430, 489, 502, 767
SspMI	CTAG	2 cut(s)	194, 416
StyD4I	CCNGG	3 cut(s)	320, 392, 667
TaaI	ACNGT	2 cut(s)	267, 308
TaqI	TCGA	1 cut(s)	608
TasI	AATT	2 cut(s)	276, 495
TauI	GCSGC	2 cut(s)	491, 769
TfiI	GAWTC	3 cut(s)	439, 589, 776
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	3 cut(s)	121, 432, 474
TseI	GCWGC	3 cut(s)	53, 491, 763
TspDTI	ATGAA	2 cut(s)	353, 400
TspRI	CASTG	3 cut(s)	121, 432, 474
Van91I	CCANNNNNTGG	3 cut(s)	100, 584, 659
VpaK11BI	GGWCC	1 cut(s)	158
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	2 cut(s)	637, 650
XspI	CTAG	2 cut(s)	194, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.