Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Reverse (-)

20408421 .. 20408942

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAGGCCGATGAGGATGTGAGAATGATATCAGCCGAGGCACCTGTGATATTTGCCAGGGCATGTGAAATGTTCATATTGGAATTGACATTGCGGTCGTGGAATCACACGGAAGAGAATAAGCGGAGGACACTCCAGAAGAATGACATTGCAGCTGCAATCACAAGGACAGATATCTTTGATTTCTTGGTAGACATTGTGCCAAGAGAGGATCTGAAAGACGAAGTCCTTGCATCGATTCCCAGGGGTACAGTGTCTGTTGGGGGGCCTGATGATGCACTTCCATACTGCTATATGCCGCCTCAGCACGCACCTCAGGTGGGGGATCCCGGGATGATTATGGGTAAGCCTATGATGGATCGATCCGTCTATGTATGCCCAACAGTCTCACCCCTACATGACCCAGCCAATGTGGCAGCAGGCACCGGACCAGCAGCAGTCGCCATCAGATCATTAGCGGGCGCAACATGGAAGCGGAAGAATAGTAAGTTCCCTTGTTTTGTTCTCCAGGCTTGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048519 GO:0048571 GO:0048573 GO:0048574 GO:0048579 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000242 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

174

Amino Acids

18.97

Weight (kDa)

5.62

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	1 - 54	1.2e-10	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Histone	PF00125	3 - 54	1.6e-11	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
AccB1I	GGYRCC	2 cut(s)	40, 422
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	5 cut(s)	94, 124, 299, 458, 475
AclWI	GGATC	5 cut(s)	219, 320, 333, 357, 366
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	320
AjnI	CCWGG	3 cut(s)	56, 242, 507
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	391
AlwI	GGATC	5 cut(s)	219, 320, 333, 357, 366
AlwNI	CAGNNNCTG	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	2 cut(s)	6, 266
ApeKI	GCWGC	4 cut(s)	152, 155, 416, 434
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	2 cut(s)	266, 428
AsuC2I	CCSGG	2 cut(s)	330, 331
AsuHPI	GGTGA	1 cut(s)	381
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	428
AxyI	CCTNAGG	1 cut(s)	315
BamHI	GGATCC	1 cut(s)	325
BanI	GGYRCC	2 cut(s)	40, 422
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	4 cut(s)	142, 164, 428, 446
BccI	CCATC	2 cut(s)	349, 452
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	3 cut(s)	58, 244, 509
BcnI	CCSGG	2 cut(s)	330, 331
BcoDI	GTCTC	1 cut(s)	391
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	5 cut(s)	153, 156, 299, 417, 435
BlsI	GCNGC	5 cut(s)	154, 157, 300, 418, 436
Bme1390I	CCNGG	5 cut(s)	58, 244, 330, 331, 509
Bme18I	GGWCC	1 cut(s)	428
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	266, 428
BmiI	GGNNCC	4 cut(s)	42, 267, 327, 424
BmrFI	CCNGG	5 cut(s)	58, 244, 330, 331, 509
BmsI	GCATC	2 cut(s)	242, 265
BpmI	CTGGAG	2 cut(s)	119, 491
Bpu10I	CCTNAGC	1 cut(s)	303
BpuMI	CCSGG	2 cut(s)	330, 331
Bsa29I	ATCGAT	2 cut(s)	236, 361
BsaJI	CCNNGG	5 cut(s)	36, 57, 242, 243, 329
BsaWI	WCCGGW	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse21I	CCTNAGG	1 cut(s)	315
Bse3DI	GCAATG	2 cut(s)	89, 147
BseBI	CCWGG	3 cut(s)	58, 244, 509
BseCI	ATCGAT	2 cut(s)	236, 361
BseDI	CCNNGG	5 cut(s)	36, 57, 242, 243, 329
BseGI	GGATG	2 cut(s)	22, 339
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	2 cut(s)	89, 147
BseMII	CTCAG	2 cut(s)	317, 329
BseXI	GCAGC	4 cut(s)	142, 164, 428, 446
BseYI	CCCAGC	1 cut(s)	403
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	8, 268
BshNI	GGYRCC	2 cut(s)	40, 422
BshVI	ATCGAT	2 cut(s)	236, 361
BsiEI	CGRYCG	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	330, 426
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	8, 268
BsoBI	CYCGRG	1 cut(s)	329
Bsp143I	GATC	5 cut(s)	211, 325, 358, 362, 449
BspACI	CCGC	5 cut(s)	94, 124, 299, 458, 475
BspANI	GGCC	2 cut(s)	8, 268
BspCNI	CTCAG	2 cut(s)	316, 328
BspDI	ATCGAT	2 cut(s)	236, 361
BspLI	GGNNCC	4 cut(s)	42, 267, 327, 424
BspPI	GGATC	5 cut(s)	219, 320, 333, 357, 366
BspT107I	GGYRCC	2 cut(s)	40, 422
BsrDI	GCAATG	2 cut(s)	89, 147
BssECI	CCNNGG	5 cut(s)	36, 57, 242, 243, 329
BssMI	GATC	5 cut(s)	211, 325, 358, 362, 449
Bst2UI	CCWGG	3 cut(s)	58, 244, 509
Bst4CI	ACNGT	2 cut(s)	253, 385
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	309, 421, 460
BstDEI	CTNAG	2 cut(s)	303, 315
BstF5I	GGATG	2 cut(s)	22, 339
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	5 cut(s)	214, 328, 361, 365, 452
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	5 cut(s)	211, 325, 358, 362, 449
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	3 cut(s)	304, 413, 440
BstNI	CCWGG	3 cut(s)	58, 244, 509
BstNSI	RCATGY	1 cut(s)	66
BstSCI	CCNGG	5 cut(s)	56, 242, 328, 329, 507
BstV1I	GCAGC	4 cut(s)	142, 164, 428, 446
BstX2I	RGATCY	2 cut(s)	211, 325
BstYI	RGATCY	2 cut(s)	211, 325
Bsu15I	ATCGAT	2 cut(s)	236, 361
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	8, 268
BsuTUI	ATCGAT	2 cut(s)	236, 361
BtsCI	GGATG	2 cut(s)	22, 339
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	3 cut(s)	309, 421, 460
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	266, 428
Cfr9I	CCCGGG	1 cut(s)	329
ClaI	ATCGAT	2 cut(s)	236, 361
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	3 cut(s)	63, 398, 468
CviJI	RGCY	7 cut(s)	8, 35, 155, 268, 349, 407, 512
CviKI_1	RGCY	7 cut(s)	8, 35, 155, 268, 349, 407, 512
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	2 cut(s)	303, 315
DpnI	GATC	5 cut(s)	213, 327, 360, 364, 451
DpnII	GATC	5 cut(s)	211, 325, 358, 362, 449
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco32I	GATATC	2 cut(s)	30, 175
Eco47I	GGWCC	1 cut(s)	428
Eco81I	CCTNAGG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	3 cut(s)	56, 242, 507
EcoRV	GATATC	2 cut(s)	30, 175
FaeI	CATG	3 cut(s)	66, 401, 471
FatI	CATG	3 cut(s)	62, 397, 467
FauI	CCCGC	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	5 cut(s)	153, 156, 299, 417, 435
FokI	GGATG	2 cut(s)	29, 346
Fsp4HI	GCNGC	5 cut(s)	153, 156, 299, 417, 435
GlaI	GCGC	1 cut(s)	463
GluI	GCNGC	5 cut(s)	153, 156, 299, 417, 435
GsaI	CCCAGC	1 cut(s)	407
GsuI	CTGGAG	2 cut(s)	119, 491
HaeIII	GGCC	2 cut(s)	8, 268
HapII	CCGG	2 cut(s)	330, 426
HhaI	GCGC	1 cut(s)	464
Hin1II	CATG	3 cut(s)	66, 401, 471
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HinfI	GANTC	2 cut(s)	103, 238
HpaII	CCGG	2 cut(s)	330, 426
HphI	GGTGA	1 cut(s)	381
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	216, 449
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	193
HpyCH4III	ACNGT	2 cut(s)	253, 385
HpyCH4V	TGCA	4 cut(s)	152, 158, 233, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	304, 413, 440
HpyF3I	CTNAG	2 cut(s)	303, 315
Hsp92II	CATG	3 cut(s)	66, 401, 471
HspAI	GCGC	1 cut(s)	462
Kzo9I	GATC	5 cut(s)	211, 325, 358, 362, 449
Lsp1109I	GCAGC	4 cut(s)	142, 164, 428, 446
LweI	GCATC	2 cut(s)	242, 265
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	5 cut(s)	213, 327, 360, 364, 451
MboI	GATC	5 cut(s)	211, 325, 358, 362, 449
MboII	GAAGA	3 cut(s)	125, 151, 490
MflI	RGATCY	2 cut(s)	211, 325
MluCI	AATT	1 cut(s)	83
MnlI	CCTC	6 cut(s)	7, 31, 120, 202, 312, 324
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	330, 426
MspR9I	CCNGG	5 cut(s)	58, 244, 330, 331, 509
MvaI	CCWGG	3 cut(s)	58, 244, 509
MwoI	GCNNNNNNNGC	3 cut(s)	304, 413, 440
NciI	CCSGG	2 cut(s)	330, 331
NdeII	GATC	5 cut(s)	211, 325, 358, 362, 449
NlaIII	CATG	3 cut(s)	66, 401, 471
NlaIV	GGNNCC	4 cut(s)	42, 267, 327, 424
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	515
NspI	RCATGY	1 cut(s)	66
PasI	CCCWGGG	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	103, 238
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	5 cut(s)	154, 157, 300, 418, 436
Psp6I	CCWGG	3 cut(s)	56, 242, 507
PspFI	CCCAGC	1 cut(s)	403
PspGI	CCWGG	3 cut(s)	56, 242, 507
PspN4I	GGNNCC	4 cut(s)	42, 267, 327, 424
PspPI	GGNCC	2 cut(s)	266, 428
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	211, 325
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SatI	GCNGC	5 cut(s)	153, 156, 299, 417, 435
Sau3AI	GATC	5 cut(s)	211, 325, 358, 362, 449
Sau96I	GGNCC	2 cut(s)	266, 428
ScrFI	CCNGG	5 cut(s)	58, 244, 330, 331, 509
SetI	ASST	4 cut(s)	46, 157, 316, 321
SfaNI	GCATC	2 cut(s)	242, 265
SinI	GGWCC	1 cut(s)	428
SmaI	CCCGGG	1 cut(s)	331
Sse9I	AATT	1 cut(s)	83
SsiI	CCGC	5 cut(s)	94, 124, 299, 458, 475
StyD4I	CCNGG	5 cut(s)	56, 242, 328, 329, 507
TaaI	ACNGT	2 cut(s)	253, 385
TaqI	TCGA	2 cut(s)	236, 361
TasI	AATT	1 cut(s)	83
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	103, 238
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	4 cut(s)	152, 155, 416, 434
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	2 cut(s)	17, 64
TspGWI	ACGGA	2 cut(s)	125, 355
TspMI	CCCGGG	1 cut(s)	329
TspRI	CASTG	1 cut(s)	258
Tth111I	GACNNNGTC	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	428
XceI	RCATGY	1 cut(s)	66
XmaI	CCCGGG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.