Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Forward (+)

18408386 .. 18412482

Gene Structure 4097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGATCAGCAAGGACATGGGCATCCAGCAACAATGGGAGTCCCAGGTAGTGCAGGTCAAGCATCATATGGTGTGAACCCCTATCAGCCTAGCCAAATGATGGGACTGTCTCCAACTGGATCAGTTGGAATGATGCATTCTCCCACTCAGCCAGGAGGTCCTTCCACCCCTTCTCAGCTTGCACAACACCAGGCTTATCAGCACATCCACCAGCAACAACAACAGCAACTACAGCAACAACTCCAAAACTTTTGGTCAGGTCAGTATCAAGAAATTGAGCAGGCTAATGATTTCAAGAACCATAGTTTACCGTTGGCCAGGATTAAGAAGATTATGAAGGCTGATGAGGATGTAAGGATGATATCGGCTGAAGCTCCAGTCATATTTGCCAGGGCCTGTGAGATGTTTATTCTGGAGTTGACACTACGGTCTTGGAACCACACAGAGGAGAACAAAAGGAGAACACTGCAAAAGAATGACATTGCAGCAGCAATTACAAGGACTGATATATTTGATTTTCTAGTTGATATTGTCCCCAGAGAGGATTTGAAAGATGAGGTTCTTGCATCGATCCCAAGAGGCGGGAATGTTCCAGTTGTCGGTCCGGCTGATGGTCTTCCTTACTATTACATGCCAGCTCAGCCTCCATCGCAGGTTGGCCCTCCCGGGATGATGGTGGGAAAGCCTGTGATGGATCAAAATATGTATGGCCAACCAACGCACCCATACATGTCTCAGCCTGCTTGGCCTCAGCAACAGCAGCCGCCTAAAGATTCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

261

Amino Acids

28.91

Weight (kDa)

5.82

Isoelectric Point (pI)

70.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	94 - 165	4.2e-17	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	102 - 165	3.2e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	427
Acc36I	ACCTGC	2 cut(s)	44, 643
AccB7I	CCANNNNNTGG	1 cut(s)	100
AciI	CCGC	2 cut(s)	582, 764
AclWI	GGATC	4 cut(s)	12, 127, 565, 702
AcoI	YGGCCR	2 cut(s)	315, 709
AcuI	CTGAAG	1 cut(s)	390
AfiI	CCNNNNNNNGG	6 cut(s)	100, 445, 541, 581, 599, 611
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	2 cut(s)	295, 550
AjnI	CCWGG	5 cut(s)	43, 151, 189, 317, 389
AluBI	AGCT	3 cut(s)	178, 374, 638
AluI	AGCT	3 cut(s)	178, 374, 638
Alw26I	GTCTC	2 cut(s)	114, 738
AlwI	GGATC	4 cut(s)	12, 127, 565, 702
AlwNI	CAGNNNCTG	1 cut(s)	396
Ama87I	CYCGRG	1 cut(s)	665
AoxI	GGCC	5 cut(s)	315, 393, 658, 709, 746
ApeKI	GCWGC	3 cut(s)	485, 488, 760
AspS9I	GGNCC	4 cut(s)	158, 393, 602, 659
AsuC2I	CCSGG	2 cut(s)	666, 667
AvaI	CYCGRG	1 cut(s)	665
AvaII	GGWCC	2 cut(s)	158, 602
BalI	TGGCCA	2 cut(s)	317, 711
BbsI	GAAGAC	1 cut(s)	608
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	3 cut(s)	497, 500, 772
BccI	CCATC	5 cut(s)	94, 605, 655, 667, 685
BciT130I	CCWGG	5 cut(s)	45, 153, 191, 319, 391
BcnI	CCSGG	2 cut(s)	666, 667
BcoDI	GTCTC	2 cut(s)	114, 738
BfaI	CTAG	2 cut(s)	90, 521
BfmI	CTRYAG	1 cut(s)	230
BfuAI	ACCTGC	2 cut(s)	44, 643
BglI	GCCNNNNNGGC	1 cut(s)	745
BisI	GCNGC	4 cut(s)	486, 489, 761, 764
BlpI	GCTNAGC	1 cut(s)	639
BlsI	GCNGC	4 cut(s)	487, 490, 762, 765
Bme1390I	CCNGG	7 cut(s)	45, 153, 191, 319, 391, 666, 667
Bme18I	GGWCC	2 cut(s)	158, 602
BmeT110I	CYCGRG	1 cut(s)	665
BmgT120I	GGNCC	4 cut(s)	158, 393, 602, 659
BmiI	GGNNCC	1 cut(s)	437
BmrFI	CCNGG	7 cut(s)	45, 153, 191, 319, 391, 666, 667
BmsI	GCATC	4 cut(s)	31, 71, 123, 575
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	2 cut(s)	360, 434
Bpu10I	CCTNAGC	1 cut(s)	750
Bpu1102I	GCTNAGC	1 cut(s)	639
BpuMI	CCSGG	2 cut(s)	666, 667
Bsa29I	ATCGAT	1 cut(s)	569
BsaJI	CCNNGG	3 cut(s)	43, 390, 665
Bsc4I	CCNNNNNNNGG	6 cut(s)	100, 445, 541, 581, 599, 611
Bse1I	ACTGG	3 cut(s)	121, 377, 593
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	5 cut(s)	45, 153, 191, 319, 391
BseCI	ATCGAT	1 cut(s)	569
BseDI	CCNNGG	3 cut(s)	43, 390, 665
BseGI	GGATG	5 cut(s)	22, 204, 355, 363, 675
BseLI	CCNNNNNNNGG	6 cut(s)	100, 445, 541, 581, 599, 611
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	6 cut(s)	161, 188, 653, 749, 764, 768
BseNI	ACTGG	3 cut(s)	121, 377, 593
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	3 cut(s)	497, 500, 772
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	5 cut(s)	317, 395, 660, 711, 748
BshVI	ATCGAT	1 cut(s)	569
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	2 cut(s)	605, 666
BslFI	GGGAC	3 cut(s)	26, 117, 518
BslI	CCNNNNNNNGG	6 cut(s)	100, 445, 541, 581, 599, 611
BsmAI	GTCTC	2 cut(s)	114, 738
BsmFI	GGGAC	3 cut(s)	26, 117, 518
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	5 cut(s)	317, 395, 660, 711, 748
BsoBI	CYCGRG	1 cut(s)	665
Bsp143I	GATC	4 cut(s)	4, 119, 570, 694
Bsp1720I	GCTNAGC	1 cut(s)	639
BspACI	CCGC	2 cut(s)	582, 764
BspANI	GGCC	5 cut(s)	317, 395, 660, 711, 748
BspCNI	CTCAG	6 cut(s)	160, 187, 652, 748, 763, 769
BspDI	ATCGAT	1 cut(s)	569
BspLI	GGNNCC	1 cut(s)	437
BspMI	ACCTGC	2 cut(s)	44, 643
BspPI	GGATC	4 cut(s)	12, 127, 565, 702
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	3 cut(s)	121, 377, 593
BssECI	CCNNGG	3 cut(s)	43, 390, 665
BssMI	GATC	4 cut(s)	4, 119, 570, 694
Bst2UI	CCWGG	5 cut(s)	45, 153, 191, 319, 391
Bst4CI	ACNGT	3 cut(s)	108, 312, 429
BstC8I	GCNNGC	4 cut(s)	180, 282, 636, 741
BstDEI	CTNAG	6 cut(s)	147, 174, 639, 735, 750, 777
BstF5I	GGATG	5 cut(s)	22, 204, 355, 363, 675
BstKTI	GATC	4 cut(s)	7, 122, 573, 697
BstMAI	GTCTC	2 cut(s)	114, 738
BstMBI	GATC	4 cut(s)	4, 119, 570, 694
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 232, 640, 649, 745, 760
BstNI	CCWGG	5 cut(s)	45, 153, 191, 319, 391
BstNSI	RCATGY	2 cut(s)	634, 733
BstSCI	CCNGG	7 cut(s)	43, 151, 189, 317, 389, 664, 665
BstSFI	CTRYAG	1 cut(s)	230
BstV1I	GCAGC	3 cut(s)	497, 500, 772
BstV2I	GAAGAC	1 cut(s)	608
Bsu15I	ATCGAT	1 cut(s)	569
BsuRI	GGCC	5 cut(s)	317, 395, 660, 711, 748
BsuTUI	ATCGAT	1 cut(s)	569
BtgZI	GCGATG	1 cut(s)	633
BtsCI	GGATG	5 cut(s)	22, 204, 355, 363, 675
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	464
BveI	ACCTGC	2 cut(s)	44, 643
Cac8I	GCNNGC	4 cut(s)	180, 282, 636, 741
CaiI	CAGNNNCTG	1 cut(s)	396
Cfr13I	GGNCC	4 cut(s)	158, 393, 602, 659
Cfr9I	CCCGGG	1 cut(s)	665
ClaI	ATCGAT	1 cut(s)	569
CpoI	CGGWCCG	1 cut(s)	602
CspI	CGGWCCG	1 cut(s)	602
CviAII	CATG	3 cut(s)	17, 631, 730
DdeI	CTNAG	6 cut(s)	147, 174, 639, 735, 750, 777
DpnI	GATC	4 cut(s)	6, 121, 572, 696
DpnII	GATC	4 cut(s)	4, 119, 570, 694
DrdI	GACNNNNNNGTC	1 cut(s)	427
DseDI	GACNNNNNNGTC	1 cut(s)	427
EaeI	YGGCCR	2 cut(s)	315, 709
Eco32I	GATATC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	158, 602
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	665
EcoO109I	RGGNCCY	2 cut(s)	158, 393
EcoRII	CCWGG	5 cut(s)	43, 151, 189, 317, 389
EcoRV	GATATC	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	138
FaeI	CATG	3 cut(s)	20, 634, 733
FaqI	GGGAC	3 cut(s)	26, 117, 518
FatI	CATG	3 cut(s)	16, 630, 729
FauI	CCCGC	1 cut(s)	575
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	4 cut(s)	486, 489, 761, 764
FokI	GGATG	5 cut(s)	9, 191, 362, 370, 682
Fsp4HI	GCNGC	4 cut(s)	486, 489, 761, 764
FspBI	CTAG	2 cut(s)	90, 521
GluI	GCNGC	4 cut(s)	486, 489, 761, 764
GsuI	CTGGAG	2 cut(s)	360, 434
HaeIII	GGCC	5 cut(s)	317, 395, 660, 711, 748
HapII	CCGG	2 cut(s)	605, 666
Hin1II	CATG	3 cut(s)	20, 634, 733
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	2 cut(s)	39, 773
HpaII	CCGG	2 cut(s)	605, 666
Hpy166II	GTNNAC	3 cut(s)	76, 308, 420
Hpy188I	TCNGA	1 cut(s)	778
Hpy188III	TCNNGA	3 cut(s)	269, 295, 413
Hpy8I	GTNNAC	3 cut(s)	76, 308, 420
HpyAV	CCTTC	3 cut(s)	171, 180, 331
HpyCH4III	ACNGT	3 cut(s)	108, 312, 429
HpyCH4V	TGCA	6 cut(s)	53, 136, 182, 469, 485, 566
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 232, 640, 649, 745, 760
HpyF3I	CTNAG	6 cut(s)	147, 174, 639, 735, 750, 777
Hsp92II	CATG	3 cut(s)	20, 634, 733
Kzo9I	GATC	4 cut(s)	4, 119, 570, 694
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	3 cut(s)	497, 500, 772
LweI	GCATC	4 cut(s)	31, 71, 123, 575
MaeI	CTAG	2 cut(s)	90, 521
MalI	GATC	4 cut(s)	6, 121, 572, 696
MboI	GATC	4 cut(s)	4, 119, 570, 694
MboII	GAAGA	2 cut(s)	340, 608
MlsI	TGGCCA	2 cut(s)	317, 711
MluCI	AATT	2 cut(s)	273, 492
MluNI	TGGCCA	2 cut(s)	317, 711
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	2 cut(s)	106, 137
MnlI	CCTC	9 cut(s)	149, 340, 439, 535, 550, 572, 654, 672, 759
Mox20I	TGGCCA	2 cut(s)	317, 711
Mph1103I	ATGCAT	1 cut(s)	138
MscI	TGGCCA	2 cut(s)	317, 711
MseI	TTAA	1 cut(s)	324
Msp20I	TGGCCA	2 cut(s)	317, 711
MspI	CCGG	2 cut(s)	605, 666
MspR9I	CCNGG	7 cut(s)	45, 153, 191, 319, 391, 666, 667
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	5 cut(s)	45, 153, 191, 319, 391
MwoI	GCNNNNNNNGC	6 cut(s)	59, 232, 640, 649, 745, 760
NciI	CCSGG	2 cut(s)	666, 667
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	4 cut(s)	4, 119, 570, 694
NlaIII	CATG	3 cut(s)	20, 634, 733
NlaIV	GGNNCC	1 cut(s)	437
NsiI	ATGCAT	1 cut(s)	138
NspI	RCATGY	2 cut(s)	634, 733
PciI	ACATGT	1 cut(s)	729
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	773
PflMI	CCANNNNNTGG	1 cut(s)	100
PkrI	GCNGC	4 cut(s)	487, 490, 762, 765
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PpuMI	RGGWCCY	1 cut(s)	158
PscI	ACATGT	1 cut(s)	729
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	5 cut(s)	43, 151, 189, 317, 389
PspGI	CCWGG	5 cut(s)	43, 151, 189, 317, 389
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	4 cut(s)	158, 393, 602, 659
PspPPI	RGGWCCY	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	396
Rsr2I	CGGWCCG	1 cut(s)	602
RsrII	CGGWCCG	1 cut(s)	602
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	4 cut(s)	486, 489, 761, 764
Sau3AI	GATC	4 cut(s)	4, 119, 570, 694
Sau96I	GGNCC	4 cut(s)	158, 393, 602, 659
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	7 cut(s)	45, 153, 191, 319, 391, 666, 667
SetI	ASST	9 cut(s)	49, 58, 160, 180, 262, 376, 561, 640, 657
SfaNI	GCATC	4 cut(s)	31, 71, 123, 575
SfcI	CTRYAG	1 cut(s)	230
SinI	GGWCC	2 cut(s)	158, 602
SmaI	CCCGGG	1 cut(s)	667
Sse9I	AATT	2 cut(s)	273, 492
SsiI	CCGC	2 cut(s)	582, 764
SspMI	CTAG	2 cut(s)	90, 521
StyD4I	CCNGG	7 cut(s)	43, 151, 189, 317, 389, 664, 665
TaaI	ACNGT	3 cut(s)	108, 312, 429
TaqI	TCGA	1 cut(s)	569
TaqII	GACCGA	1 cut(s)	590
TasI	AATT	2 cut(s)	273, 492
TauI	GCSGC	1 cut(s)	766
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	471
TseI	GCWGC	3 cut(s)	485, 488, 760
TspDTI	ATGAA	1 cut(s)	350
TspMI	CCCGGG	1 cut(s)	665
TspRI	CASTG	1 cut(s)	471
Van91I	CCANNNNNTGG	1 cut(s)	100
VpaK11BI	GGWCC	2 cut(s)	158, 602
XceI	RCATGY	2 cut(s)	634, 733
XmaI	CCCGGG	1 cut(s)	665
XspI	CTAG	2 cut(s)	90, 521
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.