Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Reverse (-)

41917191 .. 41917877

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00361270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGATGGGACTCTCTCCAACTGGATCGGTTGGAATGATGCAATCTCCCACTCAGCCGGGAGGTCCTTCTGCCCCTTCTCAGCTTGCACAACACCAAGCTTATCAGCACATCCACCAGCAACAACAACAGCAACTACAGCAACAACTCCAAAACTTTTGGTCAGGTCAGTATCAAGAAATTGAGCAGGCTAATGATTTCAAGAACCATAGTTTACCATTGGCCAGGATTAAGAAGATTATGAAGGCTGATGAGGATGTAAGGATGATATCTGCTGAAGCTCCGGTCATATTTGCCAGGGCCTGTGAGATGTTTATTCTGGAGTTGACACTACGGTCTTGGAACCACACAGAGGAGAACAAAAGGAGAACATTGCAAAAGAATGACATTGCGGCAGCAATTACAAGGACTGATATATTTGACTTTCTAGTTGATATCGTCCCCAGAGAGGATTTGAAAGATGAGGTTCTTGCATCAATCCCAAGAGGTGGGAATGTTCCAGTTGTCGGTCCAGCTGATGGTCTTCCTTACTATTACATGCCTGCTCAACATCCACCACAGGTTGGTGCTCCCGGGATGATGGTGGGAAAGCCTGTGATGGATCAAAATATGTATGGCCAACCGACACATCCATACATGGCTCAGCCAGCTTGGCCTCAGCCACAACAGCCGCACAAAGATTCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

228

Amino Acids

25.65

Weight (kDa)

5.88

Isoelectric Point (pI)

70.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	62 - 133	2.4e-17	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	70 - 133	2.5e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	331
AccB7I	CCANNNNNTGG	3 cut(s)	485, 515, 560
AciI	CCGC	2 cut(s)	389, 668
AclWI	GGATC	2 cut(s)	31, 606
AcoI	YGGCCR	2 cut(s)	219, 613
AcuI	CTGAAG	1 cut(s)	294
AfiI	CCNNNNNNNGG	6 cut(s)	349, 445, 485, 503, 515, 560
AgsI	TTSAA	2 cut(s)	199, 454
AjnI	CCWGG	2 cut(s)	221, 293
AluBI	AGCT	5 cut(s)	82, 98, 278, 512, 647
AluI	AGCT	5 cut(s)	82, 98, 278, 512, 647
Alw21I	GWGCWC	1 cut(s)	568
AlwI	GGATC	2 cut(s)	31, 606
AlwNI	CAGNNNCTG	1 cut(s)	300
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	4 cut(s)	219, 297, 613, 650
ApeKI	GCWGC	1 cut(s)	392
AspS9I	GGNCC	3 cut(s)	62, 297, 506
AsuC2I	CCSGG	3 cut(s)	57, 570, 571
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	2 cut(s)	62, 506
BalI	TGGCCA	2 cut(s)	221, 615
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	568
BbvCI	CCTCAGC	1 cut(s)	654
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	3 cut(s)	509, 571, 589
BciT130I	CCWGG	2 cut(s)	223, 295
BcnI	CCSGG	3 cut(s)	57, 570, 571
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	134
BglI	GCCNNNNNGGC	1 cut(s)	649
BisI	GCNGC	3 cut(s)	390, 393, 668
BlpI	GCTNAGC	1 cut(s)	639
BlsI	GCNGC	3 cut(s)	391, 394, 669
Bme1390I	CCNGG	5 cut(s)	57, 223, 295, 570, 571
Bme18I	GGWCC	2 cut(s)	62, 506
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	3 cut(s)	62, 297, 506
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	5 cut(s)	57, 223, 295, 570, 571
BmsI	GCATC	2 cut(s)	27, 479
BpiI	GAAGAC	1 cut(s)	512
BpmI	CTGGAG	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	654
Bpu1102I	GCTNAGC	1 cut(s)	639
BpuMI	CCSGG	3 cut(s)	57, 570, 571
BsaJI	CCNNGG	2 cut(s)	294, 569
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	6 cut(s)	349, 445, 485, 503, 515, 560
Bse1I	ACTGG	2 cut(s)	25, 497
Bse3DI	GCAATG	2 cut(s)	368, 384
BseBI	CCWGG	2 cut(s)	223, 295
BseDI	CCNNGG	2 cut(s)	294, 569
BseGI	GGATG	6 cut(s)	108, 259, 267, 547, 579, 625
BseLI	CCNNNNNNNGG	6 cut(s)	349, 445, 485, 503, 515, 560
BseMI	GCAATG	2 cut(s)	368, 384
BseMII	CTCAG	5 cut(s)	65, 92, 653, 668, 672
BseNI	ACTGG	2 cut(s)	25, 497
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	404
BshFI	GGCC	4 cut(s)	221, 299, 615, 652
BsiHKAI	GWGCWC	1 cut(s)	568
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	3 cut(s)	56, 281, 570
BslFI	GGGAC	2 cut(s)	21, 422
BslI	CCNNNNNNNGG	6 cut(s)	349, 445, 485, 503, 515, 560
BsmFI	GGGAC	2 cut(s)	21, 422
BsnI	GGCC	4 cut(s)	221, 299, 615, 652
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	2 cut(s)	23, 598
Bsp1720I	GCTNAGC	1 cut(s)	639
BspACI	CCGC	2 cut(s)	389, 668
BspANI	GGCC	4 cut(s)	221, 299, 615, 652
BspCNI	CTCAG	5 cut(s)	64, 91, 652, 667, 673
BspLI	GGNNCC	1 cut(s)	341
BspPI	GGATC	2 cut(s)	31, 606
BsrDI	GCAATG	2 cut(s)	368, 384
BsrI	ACTGG	2 cut(s)	25, 497
BssECI	CCNNGG	2 cut(s)	294, 569
BssMI	GATC	2 cut(s)	23, 598
Bst2UI	CCWGG	2 cut(s)	223, 295
Bst4CI	ACNGT	1 cut(s)	333
BstC8I	GCNNGC	4 cut(s)	84, 186, 540, 645
BstDEI	CTNAG	5 cut(s)	51, 78, 639, 654, 681
BstF5I	GGATG	6 cut(s)	108, 259, 267, 547, 579, 625
BstKTI	GATC	2 cut(s)	26, 601
BstMBI	GATC	2 cut(s)	23, 598
BstMWI	GCNNNNNNNGC	4 cut(s)	136, 644, 649, 664
BstNI	CCWGG	2 cut(s)	223, 295
BstNSI	RCATGY	1 cut(s)	538
BstSCI	CCNGG	5 cut(s)	55, 221, 293, 568, 569
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	404
BstV2I	GAAGAC	1 cut(s)	512
BsuRI	GGCC	4 cut(s)	221, 299, 615, 652
BtsCI	GGATG	6 cut(s)	108, 259, 267, 547, 579, 625
Cac8I	GCNNGC	4 cut(s)	84, 186, 540, 645
CaiI	CAGNNNCTG	1 cut(s)	300
Cfr13I	GGNCC	3 cut(s)	62, 297, 506
Cfr9I	CCCGGG	1 cut(s)	569
CviAII	CATG	2 cut(s)	535, 634
DdeI	CTNAG	5 cut(s)	51, 78, 639, 654, 681
DpnI	GATC	2 cut(s)	25, 600
DpnII	GATC	2 cut(s)	23, 598
DrdI	GACNNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	331
EaeI	YGGCCR	2 cut(s)	219, 613
Eco32I	GATATC	2 cut(s)	267, 433
Eco47I	GGWCC	2 cut(s)	62, 506
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	569
EcoO109I	RGGNCCY	2 cut(s)	62, 297
EcoRII	CCWGG	2 cut(s)	221, 293
EcoRV	GATATC	2 cut(s)	267, 433
FaeI	CATG	2 cut(s)	538, 637
FaiI	YATR	9 cut(s)	207, 239, 287, 413, 536, 608, 612, 631, 635
FaqI	GGGAC	2 cut(s)	21, 422
FatI	CATG	2 cut(s)	534, 633
Fnu4HI	GCNGC	3 cut(s)	390, 393, 668
FokI	GGATG	6 cut(s)	95, 266, 274, 534, 586, 612
Fsp4HI	GCNGC	3 cut(s)	390, 393, 668
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	3 cut(s)	390, 393, 668
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	4 cut(s)	221, 299, 615, 652
HapII	CCGG	3 cut(s)	56, 281, 570
Hin1II	CATG	2 cut(s)	538, 637
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	2 cut(s)	9, 677
HpaII	CCGG	3 cut(s)	56, 281, 570
Hpy166II	GTNNAC	2 cut(s)	212, 324
Hpy188I	TCNGA	1 cut(s)	682
Hpy188III	TCNNGA	3 cut(s)	173, 199, 317
Hpy8I	GTNNAC	2 cut(s)	212, 324
HpyAV	CCTTC	3 cut(s)	75, 84, 235
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	4 cut(s)	40, 86, 373, 470
HpyF10VI	GCNNNNNNNGC	4 cut(s)	136, 644, 649, 664
HpyF3I	CTNAG	5 cut(s)	51, 78, 639, 654, 681
Hsp92II	CATG	2 cut(s)	538, 637
Kzo9I	GATC	2 cut(s)	23, 598
LmnI	GCTCC	2 cut(s)	283, 571
Lsp1109I	GCAGC	1 cut(s)	404
LweI	GCATC	2 cut(s)	27, 479
MaeI	CTAG	1 cut(s)	425
MalI	GATC	2 cut(s)	25, 600
MboI	GATC	2 cut(s)	23, 598
MboII	GAAGA	2 cut(s)	244, 512
MhlI	GDGCHC	1 cut(s)	568
MlsI	TGGCCA	2 cut(s)	221, 615
MluCI	AATT	2 cut(s)	177, 396
MluNI	TGGCCA	2 cut(s)	221, 615
MlyI	GAGTC	1 cut(s)	3
MmeI	TCCRAC	2 cut(s)	10, 41
MnlI	CCTC	7 cut(s)	53, 244, 343, 439, 454, 476, 663
Mox20I	TGGCCA	2 cut(s)	221, 615
MscI	TGGCCA	2 cut(s)	221, 615
MseI	TTAA	1 cut(s)	228
Msp20I	TGGCCA	2 cut(s)	221, 615
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	3 cut(s)	56, 281, 570
MspR9I	CCNGG	5 cut(s)	57, 223, 295, 570, 571
MvaI	CCWGG	2 cut(s)	223, 295
MwoI	GCNNNNNNNGC	4 cut(s)	136, 644, 649, 664
NciI	CCSGG	3 cut(s)	57, 570, 571
NdeII	GATC	2 cut(s)	23, 598
NlaIII	CATG	2 cut(s)	538, 637
NlaIV	GGNNCC	1 cut(s)	341
NspI	RCATGY	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	677
PflMI	CCANNNNNTGG	3 cut(s)	485, 515, 560
PkrI	GCNGC	3 cut(s)	391, 394, 669
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
PpuMI	RGGWCCY	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	221, 293
PspGI	CCWGG	2 cut(s)	221, 293
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	3 cut(s)	62, 297, 506
PspPPI	RGGWCCY	1 cut(s)	62
PstNI	CAGNNNCTG	1 cut(s)	300
PvuII	CAGCTG	1 cut(s)	512
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	3 cut(s)	390, 393, 668
Sau3AI	GATC	2 cut(s)	23, 598
Sau96I	GGNCC	3 cut(s)	62, 297, 506
SchI	GAGTC	1 cut(s)	3
ScrFI	CCNGG	5 cut(s)	57, 223, 295, 570, 571
SduI	GDGCHC	1 cut(s)	568
SfaNI	GCATC	2 cut(s)	27, 479
SfcI	CTRYAG	1 cut(s)	134
SinI	GGWCC	2 cut(s)	62, 506
SmaI	CCCGGG	1 cut(s)	571
Sse9I	AATT	2 cut(s)	177, 396
SsiI	CCGC	2 cut(s)	389, 668
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	5 cut(s)	55, 221, 293, 568, 569
TaaI	ACNGT	1 cut(s)	333
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	2 cut(s)	177, 396
TauI	GCSGC	2 cut(s)	392, 670
TfiI	GAWTC	1 cut(s)	677
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseI	GCWGC	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	254
TspMI	CCCGGG	1 cut(s)	569
Van91I	CCANNNNNTGG	3 cut(s)	485, 515, 560
VpaK11BI	GGWCC	2 cut(s)	62, 506
XceI	RCATGY	1 cut(s)	538
XmaI	CCCGGG	1 cut(s)	569
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.