Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004911.1

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Forward (+)

68648 .. 71710

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004911.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgcaaaactatcagtttggtaccccaagtttgaagctcgacctaagaatgatacgaaaagtcaaacgaaaagttatagctgggacgacgaaccaaaactggcgcttttttatagtggggagagtggacgtaaatactccccccactccgattcccccaacccagctccactcctttcctgtttcatacttcatcagatttcccaatttctcccaacccaatttaaaggctttacaggtggttgagcaaaacccagaacccgagaacaagcagaccgacaaaaggatggatcagcaagggcatgggcatccaacaacaatgggagtcccaggtgcaggtcaagcatcatatggtgtgaacccatatcagcctagccaaataatgggactctctccaactggatcagttggaatgatgcaatctcccactcagccgggaggtccttctgccccttctcagcttgcacaacaccaagcttatcagcacatccaccagcaacaacaacagcagctacagcaacaactccaaaacttttggtcaggtcagtatcaagaaattgagcaggctaatgatttcaagaaccatagtttaccattggccaggattaagaagattatgaaggctgatgaggatgtaaggatgatatctgctgaagctccggtcatatttgccagggcctgtgagatgtttattctggagttgacgctacggtcttggaaccacacagaggagaacaaaaggagaacattgcaaaagaatgacattgcggcagcaattacaaggactgatatatttgattttctagttgatatcgtccctagagaggatttgaaagatgaggttctggcatcaatcccaagaggtgggaatgttccagttgtcggtccagctgatggtcttccttactattacatgcctgctcaacatccaccacaggttggtgctcctgggatgatggtgggaaagcctgtgatggatcaaaatatgtatggccaaccaacacatccatacatggctcagccagcttggcctcagcaacaacagccgcacaaagattctgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

354

Amino Acids

39.92

Weight (kDa)

8.5

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	709
Acc36I	ACCTGC	1 cut(s)	326
Acc65I	GGTACC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	20
AccB7I	CCANNNNNTGG	4 cut(s)	382, 863, 893, 938
AciI	CCGC	2 cut(s)	767, 1046
AclWI	GGATC	3 cut(s)	297, 409, 984
AcoI	YGGCCR	2 cut(s)	597, 991
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	9 cut(s)	282, 335, 382, 727, 823, 863, 881, 893, 938
AgsI	TTSAA	3 cut(s)	34, 577, 832
AjnI	CCWGG	4 cut(s)	328, 599, 671, 946
AluBI	AGCT	9 cut(s)	37, 80, 166, 460, 476, 511, 656, 890, 1025
AluI	AGCT	9 cut(s)	37, 80, 166, 460, 476, 511, 656, 890, 1025
Alw21I	GWGCWC	1 cut(s)	946
AlwI	GGATC	3 cut(s)	297, 409, 984
AlwNI	CAGNNNCTG	1 cut(s)	678
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	4 cut(s)	597, 675, 991, 1028
ApeKI	GCWGC	2 cut(s)	508, 770
Asp718I	GGTACC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	3 cut(s)	440, 675, 884
AsuC2I	CCSGG	1 cut(s)	435
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	2 cut(s)	440, 884
BalI	TGGCCA	2 cut(s)	599, 993
BanI	GGYRCC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	890
Bbv12I	GWGCWC	1 cut(s)	946
BbvCI	CCTCAGC	1 cut(s)	1032
BbvI	GCAGC	2 cut(s)	520, 782
BccI	CCATC	4 cut(s)	280, 887, 949, 967
BciT130I	CCWGG	4 cut(s)	330, 601, 673, 948
BcnI	CCSGG	1 cut(s)	435
BfaI	CTAG	3 cut(s)	372, 803, 819
BfmI	CTRYAG	1 cut(s)	512
BfoI	RGCGCY	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	326
BglI	GCCNNNNNGGC	1 cut(s)	1027
BisI	GCNGC	4 cut(s)	509, 768, 771, 1046
BlpI	GCTNAGC	1 cut(s)	1017
BlsI	GCNGC	4 cut(s)	510, 769, 772, 1047
Bme1390I	CCNGG	5 cut(s)	330, 435, 601, 673, 948
Bme18I	GGWCC	2 cut(s)	440, 884
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	3 cut(s)	440, 675, 884
BmiI	GGNNCC	2 cut(s)	22, 719
BmrFI	CCNGG	5 cut(s)	330, 435, 601, 673, 948
BmsI	GCATC	4 cut(s)	316, 353, 405, 857
BpiI	GAAGAC	1 cut(s)	890
BpmI	CTGGAG	1 cut(s)	716
Bpu10I	CCTNAGC	1 cut(s)	1032
Bpu1102I	GCTNAGC	1 cut(s)	1017
BpuMI	CCSGG	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	328, 672, 947
BsaWI	WCCGGW	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	9 cut(s)	282, 335, 382, 727, 823, 863, 881, 893, 938
Bse1I	ACTGG	3 cut(s)	104, 403, 875
Bse3DI	GCAATG	2 cut(s)	746, 762
BseBI	CCWGG	4 cut(s)	330, 601, 673, 948
BseDI	CCNNGG	3 cut(s)	328, 672, 947
BseGI	GGATG	8 cut(s)	291, 307, 486, 637, 645, 925, 957, 1003
BseLI	CCNNNNNNNGG	9 cut(s)	282, 335, 382, 727, 823, 863, 881, 893, 938
BseMI	GCAATG	2 cut(s)	746, 762
BseMII	CTCAG	5 cut(s)	443, 470, 1031, 1046, 1050
BseNI	ACTGG	3 cut(s)	104, 403, 875
BseRI	GAGGAG	1 cut(s)	743
BseXI	GCAGC	2 cut(s)	520, 782
BseYI	CCCAGC	2 cut(s)	80, 162
BsgI	GTGCAG	1 cut(s)	354
BshFI	GGCC	4 cut(s)	599, 677, 993, 1030
BshNI	GGYRCC	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	946
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	434, 659
BslFI	GGGAC	4 cut(s)	97, 311, 399, 800
BslI	CCNNNNNNNGG	9 cut(s)	282, 335, 382, 727, 823, 863, 881, 893, 938
BsmFI	GGGAC	4 cut(s)	97, 311, 399, 800
BsnI	GGCC	4 cut(s)	599, 677, 993, 1030
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	946
Bsp143I	GATC	3 cut(s)	289, 401, 976
Bsp1720I	GCTNAGC	1 cut(s)	1017
BspACI	CCGC	2 cut(s)	767, 1046
BspANI	GGCC	4 cut(s)	599, 677, 993, 1030
BspCNI	CTCAG	5 cut(s)	442, 469, 1030, 1045, 1051
BspLI	GGNNCC	2 cut(s)	22, 719
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	3 cut(s)	297, 409, 984
BspT107I	GGYRCC	1 cut(s)	20
BsrDI	GCAATG	2 cut(s)	746, 762
BsrI	ACTGG	3 cut(s)	104, 403, 875
BssECI	CCNNGG	3 cut(s)	328, 672, 947
BssMI	GATC	3 cut(s)	289, 401, 976
Bst2UI	CCWGG	4 cut(s)	330, 601, 673, 948
Bst4CI	ACNGT	1 cut(s)	711
BstC8I	GCNNGC	4 cut(s)	462, 564, 918, 1023
BstDEI	CTNAG	6 cut(s)	44, 429, 456, 1017, 1032, 1059
BstF5I	GGATG	8 cut(s)	291, 307, 486, 637, 645, 925, 957, 1003
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	292, 404, 979
BstMBI	GATC	3 cut(s)	289, 401, 976
BstMWI	GCNNNNNNNGC	5 cut(s)	341, 514, 1022, 1027, 1042
BstNI	CCWGG	4 cut(s)	330, 601, 673, 948
BstNSI	RCATGY	1 cut(s)	916
BstSCI	CCNGG	5 cut(s)	328, 433, 599, 671, 946
BstSFI	CTRYAG	1 cut(s)	512
BstV1I	GCAGC	2 cut(s)	520, 782
BstV2I	GAAGAC	1 cut(s)	890
BsuRI	GGCC	4 cut(s)	599, 677, 993, 1030
BtsCI	GGATG	8 cut(s)	291, 307, 486, 637, 645, 925, 957, 1003
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	4 cut(s)	462, 564, 918, 1023
CaiI	CAGNNNCTG	1 cut(s)	678
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	3 cut(s)	440, 675, 884
CseI	GACGC	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	3 cut(s)	302, 913, 1012
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	6 cut(s)	44, 429, 456, 1017, 1032, 1059
DpnI	GATC	3 cut(s)	291, 403, 978
DpnII	GATC	3 cut(s)	289, 401, 976
DraI	TTTAAA	1 cut(s)	225
DrdI	GACNNNNNNGTC	1 cut(s)	709
DseDI	GACNNNNNNGTC	1 cut(s)	709
EaeI	YGGCCR	2 cut(s)	597, 991
Eco32I	GATATC	2 cut(s)	645, 811
Eco47I	GGWCC	2 cut(s)	440, 884
Eco57I	CTGAAG	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	260
EcoO109I	RGGNCCY	2 cut(s)	440, 675
EcoRII	CCWGG	4 cut(s)	328, 599, 671, 946
EcoRV	GATATC	2 cut(s)	645, 811
FaeI	CATG	3 cut(s)	305, 916, 1015
FaqI	GGGAC	4 cut(s)	97, 311, 399, 800
FatI	CATG	3 cut(s)	301, 912, 1011
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	4 cut(s)	509, 768, 771, 1046
FokI	GGATG	8 cut(s)	294, 298, 473, 644, 652, 912, 964, 990
Fsp4HI	GCNGC	4 cut(s)	509, 768, 771, 1046
FspBI	CTAG	3 cut(s)	372, 803, 819
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	4 cut(s)	509, 768, 771, 1046
GsaI	CCCAGC	2 cut(s)	84, 166
GsuI	CTGGAG	1 cut(s)	716
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	4 cut(s)	599, 677, 993, 1030
HapII	CCGG	2 cut(s)	434, 659
HgaI	GACGC	1 cut(s)	712
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	305, 916, 1015
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	4 cut(s)	151, 324, 387, 1055
HpaII	CCGG	2 cut(s)	434, 659
Hpy166II	GTNNAC	4 cut(s)	127, 358, 590, 702
Hpy188I	TCNGA	3 cut(s)	150, 197, 1060
Hpy188III	TCNNGA	3 cut(s)	551, 577, 695
Hpy8I	GTNNAC	4 cut(s)	127, 358, 590, 702
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	3 cut(s)	453, 462, 613
HpyCH4III	ACNGT	1 cut(s)	711
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	5 cut(s)	4, 335, 418, 464, 751
HpyF10VI	GCNNNNNNNGC	5 cut(s)	341, 514, 1022, 1027, 1042
HpyF3I	CTNAG	6 cut(s)	44, 429, 456, 1017, 1032, 1059
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	305, 916, 1015
HspAI	GCGC	1 cut(s)	103
KpnI	GGTACC	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	289, 401, 976
LmnI	GCTCC	3 cut(s)	171, 661, 949
Lsp1109I	GCAGC	2 cut(s)	520, 782
LweI	GCATC	4 cut(s)	316, 353, 405, 857
MaeI	CTAG	3 cut(s)	372, 803, 819
MaeII	ACGT	1 cut(s)	129
MalI	GATC	3 cut(s)	291, 403, 978
MboI	GATC	3 cut(s)	289, 401, 976
MboII	GAAGA	2 cut(s)	622, 890
MhlI	GDGCHC	1 cut(s)	946
MlsI	TGGCCA	2 cut(s)	599, 993
MluCI	AATT	4 cut(s)	205, 220, 555, 774
MluNI	TGGCCA	2 cut(s)	599, 993
MlyI	GAGTC	2 cut(s)	333, 381
MmeI	TCCRAC	3 cut(s)	335, 388, 419
MnlI	CCTC	7 cut(s)	431, 622, 721, 817, 832, 854, 1041
Mox20I	TGGCCA	2 cut(s)	599, 993
MscI	TGGCCA	2 cut(s)	599, 993
MseI	TTAA	2 cut(s)	224, 606
Msp20I	TGGCCA	2 cut(s)	599, 993
MspA1I	CMGCKG	1 cut(s)	890
MspI	CCGG	2 cut(s)	434, 659
MspR9I	CCNGG	5 cut(s)	330, 435, 601, 673, 948
MvaI	CCWGG	4 cut(s)	330, 601, 673, 948
MwoI	GCNNNNNNNGC	5 cut(s)	341, 514, 1022, 1027, 1042
NciI	CCSGG	1 cut(s)	435
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	3 cut(s)	289, 401, 976
NlaIII	CATG	3 cut(s)	305, 916, 1015
NlaIV	GGNNCC	2 cut(s)	22, 719
NspI	RCATGY	1 cut(s)	916
PfeI	GAWTC	2 cut(s)	151, 1055
PflMI	CCANNNNNTGG	4 cut(s)	382, 863, 893, 938
PkrI	GCNGC	4 cut(s)	510, 769, 772, 1047
PleI	GAGTC	2 cut(s)	332, 381
PpsI	GAGTC	2 cut(s)	332, 381
PpuMI	RGGWCCY	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	4 cut(s)	328, 599, 671, 946
PspFI	CCCAGC	2 cut(s)	80, 162
PspGI	CCWGG	4 cut(s)	328, 599, 671, 946
PspN4I	GGNNCC	2 cut(s)	22, 719
PspPI	GGNCC	3 cut(s)	440, 675, 884
PspPPI	RGGWCCY	1 cut(s)	440
PstNI	CAGNNNCTG	1 cut(s)	678
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	224, 606
SatI	GCNGC	4 cut(s)	509, 768, 771, 1046
Sau3AI	GATC	3 cut(s)	289, 401, 976
Sau96I	GGNCC	3 cut(s)	440, 675, 884
SchI	GAGTC	2 cut(s)	333, 381
ScrFI	CCNGG	5 cut(s)	330, 435, 601, 673, 948
SduI	GDGCHC	1 cut(s)	946
SfaNI	GCATC	4 cut(s)	316, 353, 405, 857
SfcI	CTRYAG	1 cut(s)	512
SinI	GGWCC	2 cut(s)	440, 884
Sse9I	AATT	4 cut(s)	205, 220, 555, 774
SsiI	CCGC	2 cut(s)	767, 1046
SspMI	CTAG	3 cut(s)	372, 803, 819
StyD4I	CCNGG	5 cut(s)	328, 433, 599, 671, 946
TaaI	ACNGT	1 cut(s)	711
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	39
TaqII	GACCGA	2 cut(s)	290, 872
TasI	AATT	4 cut(s)	205, 220, 555, 774
TauI	GCSGC	2 cut(s)	770, 1048
TfiI	GAWTC	2 cut(s)	151, 1055
Tru1I	TTAA	2 cut(s)	224, 606
Tru9I	TTAA	2 cut(s)	224, 606
TseI	GCWGC	2 cut(s)	508, 770
TspDTI	ATGAA	3 cut(s)	174, 181, 632
Van91I	CCANNNNNTGG	4 cut(s)	382, 863, 893, 938
VpaK11BI	GGWCC	2 cut(s)	440, 884
XceI	RCATGY	1 cut(s)	916
XspI	CTAG	3 cut(s)	372, 803, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.