Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Reverse (-)

45861153 .. 45862429

Gene Structure 1277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025463

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTAGGGAGTCCGAATCCTGCTACAGTTGGTGCGCCAGTTGGAGGCATTCAATCTAGTAGTCAATCTGCCGGAGCTCAGCTTCAACAGCATCAACTTGCTTATCAGCACATTCACCAGCAGCAGCAGCAACAACTTCAACAACAGCTGCAAAGTTTCTGGGCAAATCAGTTTCAAGAGATTGAGAAGGTAACTGATTTCAAGAACCATAGCCTTCCTCTAGCAAGGATCAAGAAGATTATGAAAGCTGATGAGGATGTGAGAATGATATCAGCTGAGGCACCTGTGATCTTTGCAAGGGCATGTGAAATGTTCATCTTGGAGTTGACCTTGCGGTCTTGGAATCACACAGAAGAGAATAAAAGGAGGACACTTCAAAAGAATGACATTGCAGCTGCAATCACAAGGACTGATATCTTTGATTTCTTGGTAGACATCGTGCCTAGAGAGGATCTGAAAGATGAAGTCCTTGCATCCATTCCAAGGGGAACGGTTTCTGTTGGGGCTGCTGATGCACTTCCTCCATACTGCTATATGCCACCTCAGCATGGACCTCAGCATGGAAGTGAAGAAGTACACATGACTTATCCCAGCCTCATGTTCATGTTGAATTCAAATAGGAGCTCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048519 GO:0048571 GO:0048573 GO:0048574 GO:0048579 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000242 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

211

Amino Acids

23.62

Weight (kDa)

5.89

Isoelectric Point (pI)

68.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	62 - 134	7.2e-18	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	71 - 134	2.1e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	2 cut(s)	236, 459
AcsI	RAATTY	1 cut(s)	610
AfaI	GTAC	1 cut(s)	576
AfiI	CCNNNNNNNGG	4 cut(s)	44, 483, 548, 560
AgsI	TTSAA	8 cut(s)	53, 86, 140, 176, 202, 377, 610, 615
AluBI	AGCT	7 cut(s)	77, 82, 148, 248, 275, 395, 624
AluI	AGCT	7 cut(s)	77, 82, 148, 248, 275, 395, 624
Alw21I	GWGCWC	2 cut(s)	79, 626
AlwI	GGATC	2 cut(s)	236, 459
ApeKI	GCWGC	7 cut(s)	121, 124, 127, 148, 392, 395, 506
ApoI	RAATTY	1 cut(s)	610
Asp700I	GAANNNNTTC	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	79, 626
Bbv12I	GWGCWC	2 cut(s)	79, 626
BbvCI	CCTCAGC	3 cut(s)	276, 543, 555
BbvI	GCAGC	7 cut(s)	133, 135, 136, 139, 382, 404, 493
BfaI	CTAG	3 cut(s)	57, 221, 444
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	7 cut(s)	122, 125, 128, 149, 393, 396, 507
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	7 cut(s)	123, 126, 129, 150, 394, 397, 508
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	282
BmsI	GCATC	3 cut(s)	100, 482, 502
Bpu10I	CCTNAGC	3 cut(s)	276, 543, 555
Bpu1102I	GCTNAGC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 483, 548, 560
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	2 cut(s)	262, 473
BseLI	CCNNNNNNNGG	4 cut(s)	44, 483, 548, 560
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	4 cut(s)	92, 267, 557, 569
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	7 cut(s)	133, 135, 136, 139, 382, 404, 493
BseYI	CCCAGC	1 cut(s)	590
BshNI	GGYRCC	1 cut(s)	280
BsiHKAI	GWGCWC	2 cut(s)	79, 626
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	4 cut(s)	44, 483, 548, 560
BsmI	GAATGC	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	79, 626
Bsp143I	GATC	3 cut(s)	228, 288, 451
Bsp1720I	GCTNAGC	1 cut(s)	78
BspACI	CCGC	1 cut(s)	334
BspCNI	CTCAG	4 cut(s)	91, 268, 556, 568
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	236, 459
BspT107I	GGYRCC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	3 cut(s)	228, 288, 451
BssT1I	CCWWGG	1 cut(s)	482
Bst4CI	ACNGT	2 cut(s)	28, 493
Bst6I	CTCTTC	1 cut(s)	348
BstDEI	CTNAG	5 cut(s)	78, 276, 543, 555, 625
BstF5I	GGATG	2 cut(s)	262, 473
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	3 cut(s)	231, 291, 454
BstMBI	GATC	3 cut(s)	228, 288, 451
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 127, 512, 544
BstNSI	RCATGY	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	7 cut(s)	133, 135, 136, 139, 382, 404, 493
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BtsCI	GGATG	2 cut(s)	262, 473
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	575
CviAII	CATG	6 cut(s)	303, 548, 560, 580, 598, 604
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	5 cut(s)	78, 276, 543, 555, 625
DpnI	GATC	3 cut(s)	230, 290, 453
DpnII	GATC	3 cut(s)	228, 288, 451
DrdI	GACNNNNNNGTC	1 cut(s)	334
DseDI	GACNNNNNNGTC	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	2 cut(s)	77, 624
Eco130I	CCWWGG	1 cut(s)	482
Eco24I	GRGCYC	2 cut(s)	79, 626
Eco32I	GATATC	2 cut(s)	270, 415
Eco47I	GGWCC	1 cut(s)	551
Eco53kI	GAGCTC	2 cut(s)	77, 624
EcoICRI	GAGCTC	2 cut(s)	77, 624
EcoRI	GAATTC	1 cut(s)	610
EcoRV	GATATC	2 cut(s)	270, 415
EcoT14I	CCWWGG	1 cut(s)	482
EcoT38I	GRGCYC	2 cut(s)	79, 626
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	6 cut(s)	306, 551, 563, 583, 601, 607
FatI	CATG	6 cut(s)	302, 547, 559, 579, 597, 603
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	7 cut(s)	122, 125, 128, 149, 393, 396, 507
FokI	GGATG	2 cut(s)	269, 460
FriOI	GRGCYC	2 cut(s)	79, 626
Fsp4HI	GCNGC	7 cut(s)	122, 125, 128, 149, 393, 396, 507
FspBI	CTAG	3 cut(s)	57, 221, 444
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	7 cut(s)	122, 125, 128, 149, 393, 396, 507
GsaI	CCCAGC	1 cut(s)	594
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	6 cut(s)	306, 551, 563, 583, 601, 607
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	3 cut(s)	10, 16, 343
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	3 cut(s)	327, 433, 577
Hpy188I	TCNGA	3 cut(s)	15, 456, 628
Hpy188III	TCNNGA	3 cut(s)	176, 202, 232
Hpy8I	GTNNAC	3 cut(s)	327, 433, 577
HpyAV	CCTTC	2 cut(s)	181, 224
HpyCH4III	ACNGT	2 cut(s)	28, 493
HpyCH4V	TGCA	6 cut(s)	151, 296, 392, 398, 473, 515
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 127, 512, 544
HpyF3I	CTNAG	5 cut(s)	78, 276, 543, 555, 625
Hsp92II	CATG	6 cut(s)	306, 551, 563, 583, 601, 607
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	3 cut(s)	228, 288, 451
LmnI	GCTCC	2 cut(s)	74, 621
LpnPI	CCDG	7 cut(s)	33, 51, 85, 131, 145, 297, 604
Lsp1109I	GCAGC	7 cut(s)	133, 135, 136, 139, 382, 404, 493
LweI	GCATC	3 cut(s)	100, 482, 502
MaeI	CTAG	3 cut(s)	57, 221, 444
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	230, 290, 453
MboI	GATC	3 cut(s)	228, 288, 451
MboII	GAAGA	3 cut(s)	247, 365, 581
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	79, 626
MluCI	AATT	1 cut(s)	610
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	493
MslI	CAYNNNNRTG	2 cut(s)	564, 602
MspA1I	CMGCKG	3 cut(s)	148, 275, 395
MspI	CCGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	48
MwoI	GCNNNNNNNGC	4 cut(s)	88, 127, 512, 544
NdeII	GATC	3 cut(s)	228, 288, 451
NlaIII	CATG	6 cut(s)	306, 551, 563, 583, 601, 607
NlaIV	GGNNCC	1 cut(s)	282
NspI	RCATGY	1 cut(s)	306
PctI	GAATGC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	493
PfeI	GAWTC	2 cut(s)	16, 343
PkrI	GCNGC	7 cut(s)	123, 126, 129, 150, 394, 397, 508
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp124BI	GAGCTC	2 cut(s)	79, 626
PspFI	CCCAGC	1 cut(s)	590
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	451
PvuII	CAGCTG	3 cut(s)	148, 275, 395
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
RseI	CAYNNNNRTG	2 cut(s)	564, 602
SacI	GAGCTC	2 cut(s)	79, 626
SatI	GCNGC	7 cut(s)	122, 125, 128, 149, 393, 396, 507
Sau3AI	GATC	3 cut(s)	228, 288, 451
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	1 cut(s)	19
SduI	GDGCHC	2 cut(s)	79, 626
SfaNI	GCATC	3 cut(s)	100, 482, 502
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	2 cut(s)	564, 602
Sse9I	AATT	1 cut(s)	610
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	3 cut(s)	57, 221, 444
SstI	GAGCTC	2 cut(s)	79, 626
StyI	CCWWGG	1 cut(s)	482
TaaI	ACNGT	2 cut(s)	28, 493
TasI	AATT	1 cut(s)	610
TatI	WGTACW	1 cut(s)	574
TfiI	GAWTC	2 cut(s)	16, 343
TseI	GCWGC	7 cut(s)	121, 124, 127, 148, 392, 395, 506
TspDTI	ATGAA	4 cut(s)	257, 304, 477, 592
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	493
XspI	CTAG	3 cut(s)	57, 221, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.