Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Reverse (-)

28759728 .. 28762109

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G328500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGATCCACAAGGGCATAACCAACCCCAATCTATGGGGATGGTAGGCAGTGGAGCTCAATTGACATATGGTACTAACCCATATCAGCATAATCAAATGGTTGGGAGCCCAAATCCGGGGTCAGTTGCCGGAACAGTGGGAGCTATTCAATCAACTAGTCAATCTGCTGGAGCTCAGCTTGCACAACACCAACTTGCTTATCAGCATATCCACCACCAGCAACAGCAACAACTTCAGCAACAGCTGCAATCTTTTTGGGCGAATCAGTATCAAGAAATTGACAAGGTAACTGATTTCAAGAACCATAGCCTTCCCTTAGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTGAGAATGATATCAGCTGAGGCACCTGTAATATTTGCCAGGGCATGTGAAATGTTCATATTGGAACTGACATTGCGGTCTTGGAATCATACGGAAGAGAATAAGCGGAGGACACTTCAGAAGAATGACATTGCAGCTGCAATCACAAGGACTGATATCTTTGATTTCTTGGTAGACATTGTGCCAAGAGAGGATCTGAAAGATGAGGTCCTTGCATCAATTCCAAGGGGAACAGTTTCTGTAGGAGGGCCGGGTGATGCACTTCCATACTGCTACATGCCGCCTCAGCATGCGCCTCAGGTTGGGGCTCCTGGGATGATTATGGGTAAGCCTATGATGGACCCATCTATGTATGCTCAACAGTCTCACCCTTACATGGGTCAGCCAATGTGGCAGCAGGCACCGGAGCAGCAGCAGTCACCATCAGATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048519 GO:0048571 GO:0048573 GO:0048574 GO:0048579 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000242 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

263

Amino Acids

29.16

Weight (kDa)

5.96

Isoelectric Point (pI)

61.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
AccB1I	GGYRCC	2 cut(s)	376, 754
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	3 cut(s)	430, 460, 635
AclWI	GGATC	3 cut(s)	12, 332, 555
AcuI	CTGAAG	2 cut(s)	218, 455
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	7 cut(s)	34, 115, 116, 321, 656, 730, 731
AgsI	TTSAA	2 cut(s)	149, 298
AhlI	ACTAGT	1 cut(s)	155
AjnI	CCWGG	2 cut(s)	392, 664
AluBI	AGCT	7 cut(s)	56, 143, 173, 178, 244, 371, 491
AluI	AGCT	7 cut(s)	56, 143, 173, 178, 244, 371, 491
Alw21I	GWGCWC	2 cut(s)	58, 175
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	3 cut(s)	12, 332, 555
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	6 cut(s)	244, 488, 491, 748, 763, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
Asp700I	GAANNNNTTC	1 cut(s)	589
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	3 cut(s)	562, 602, 694
AsuC2I	CCSGG	2 cut(s)	117, 606
AsuHPI	GGTGA	3 cut(s)	620, 713, 765
AvaII	GGWCC	2 cut(s)	562, 694
AxyI	CCTNAGG	1 cut(s)	651
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	376, 754
BanII	GRGCYC	4 cut(s)	58, 110, 175, 664
Bbv12I	GWGCWC	2 cut(s)	58, 175
BbvCI	CCTCAGC	2 cut(s)	372, 639
BbvI	GCAGC	6 cut(s)	231, 478, 500, 760, 775, 778
BccI	CCATC	4 cut(s)	34, 685, 706, 784
BciT130I	CCWGG	2 cut(s)	394, 666
BcnI	CCSGG	2 cut(s)	117, 606
BcoDI	GTCTC	1 cut(s)	723
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	594
BglI	GCCNNNNNGGC	1 cut(s)	745
BisI	GCNGC	7 cut(s)	245, 489, 492, 635, 749, 764, 767
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	7 cut(s)	246, 490, 493, 636, 750, 765, 768
Bme1390I	CCNGG	4 cut(s)	117, 394, 606, 666
Bme18I	GGWCC	2 cut(s)	562, 694
BmgT120I	GGNCC	3 cut(s)	562, 602, 694
BmiI	GGNNCC	6 cut(s)	6, 107, 378, 663, 696, 756
BmrFI	CCNGG	4 cut(s)	117, 394, 606, 666
BmsI	GCATC	2 cut(s)	578, 601
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	3 cut(s)	316, 372, 639
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	2 cut(s)	117, 606
BsaJI	CCNNGG	4 cut(s)	116, 393, 578, 665
BsaWI	WCCGGW	1 cut(s)	757
Bsc4I	CCNNNNNNNGG	7 cut(s)	34, 115, 116, 321, 656, 730, 731
Bse21I	CCTNAGG	1 cut(s)	651
Bse3DI	GCAATG	2 cut(s)	425, 483
BseBI	CCWGG	2 cut(s)	394, 666
BseDI	CCNNGG	4 cut(s)	116, 393, 578, 665
BseGI	GGATG	3 cut(s)	45, 358, 675
BseLI	CCNNNNNNNGG	7 cut(s)	34, 115, 116, 321, 656, 730, 731
BseMI	GCAATG	2 cut(s)	425, 483
BseMII	CTCAG	4 cut(s)	188, 363, 653, 665
BseXI	GCAGC	6 cut(s)	231, 478, 500, 760, 775, 778
BshFI	GGCC	1 cut(s)	604
BshNI	GGYRCC	2 cut(s)	376, 754
BsiHKAI	GWGCWC	2 cut(s)	58, 175
BsiSI	CCGG	4 cut(s)	116, 129, 605, 758
BslI	CCNNNNNNNGG	7 cut(s)	34, 115, 116, 321, 656, 730, 731
BsmAI	GTCTC	1 cut(s)	723
BsnI	GGCC	1 cut(s)	604
Bsp1286I	GDGCHC	4 cut(s)	58, 110, 175, 664
Bsp143I	GATC	4 cut(s)	4, 324, 547, 781
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	3 cut(s)	430, 460, 635
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	4 cut(s)	187, 364, 652, 664
BspLI	GGNNCC	6 cut(s)	6, 107, 378, 663, 696, 756
BspPI	GGATC	3 cut(s)	12, 332, 555
BspT107I	GGYRCC	2 cut(s)	376, 754
BsrDI	GCAATG	2 cut(s)	425, 483
BssECI	CCNNGG	4 cut(s)	116, 393, 578, 665
BssMI	GATC	4 cut(s)	4, 324, 547, 781
BssT1I	CCWWGG	1 cut(s)	578
Bst2UI	CCWGG	2 cut(s)	394, 666
Bst4CI	ACNGT	3 cut(s)	136, 589, 717
Bst6I	CTCTTC	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstC8I	GCNNGC	3 cut(s)	180, 645, 753
BstDEI	CTNAG	5 cut(s)	174, 316, 372, 639, 651
BstENI	CCTNNNNNAGG	1 cut(s)	319
BstF5I	GGATG	3 cut(s)	45, 358, 675
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	4 cut(s)	7, 327, 550, 784
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	4 cut(s)	4, 324, 547, 781
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 244, 640, 745
BstNI	CCWGG	2 cut(s)	394, 666
BstNSI	RCATGY	3 cut(s)	402, 634, 647
BstSCI	CCNGG	4 cut(s)	115, 392, 604, 664
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	6 cut(s)	231, 478, 500, 760, 775, 778
BstX2I	RGATCY	2 cut(s)	4, 547
BstYI	RGATCY	2 cut(s)	4, 547
Bsu36I	CCTNAGG	1 cut(s)	651
BsuRI	GGCC	1 cut(s)	604
BtsCI	GGATG	3 cut(s)	45, 358, 675
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	55, 141
Cac8I	GCNNGC	3 cut(s)	180, 645, 753
CaiI	CAGNNNCTG	1 cut(s)	593
CfoI	GCGC	1 cut(s)	649
Cfr13I	GGNCC	3 cut(s)	562, 602, 694
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	4 cut(s)	399, 631, 644, 730
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	5 cut(s)	174, 316, 372, 639, 651
DpnI	GATC	4 cut(s)	6, 326, 549, 783
DpnII	GATC	4 cut(s)	4, 324, 547, 781
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Ecl136II	GAGCTC	2 cut(s)	56, 173
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	4 cut(s)	58, 110, 175, 664
Eco32I	GATATC	2 cut(s)	366, 511
Eco47I	GGWCC	2 cut(s)	562, 694
Eco53kI	GAGCTC	2 cut(s)	56, 173
Eco57I	CTGAAG	2 cut(s)	218, 455
Eco81I	CCTNAGG	1 cut(s)	651
EcoICRI	GAGCTC	2 cut(s)	56, 173
EcoNI	CCTNNNNNAGG	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	562
EcoRII	CCWGG	2 cut(s)	392, 664
EcoRV	GATATC	2 cut(s)	366, 511
EcoT14I	CCWWGG	1 cut(s)	578
EcoT38I	GRGCYC	4 cut(s)	58, 110, 175, 664
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	4 cut(s)	402, 634, 647, 733
FatI	CATG	4 cut(s)	398, 630, 643, 729
FauNDI	CATATG	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	7 cut(s)	245, 489, 492, 635, 749, 764, 767
FokI	GGATG	3 cut(s)	52, 365, 682
FriOI	GRGCYC	4 cut(s)	58, 110, 175, 664
Fsp4HI	GCNGC	7 cut(s)	245, 489, 492, 635, 749, 764, 767
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	7 cut(s)	245, 489, 492, 635, 749, 764, 767
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	4 cut(s)	116, 129, 605, 758
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	4 cut(s)	402, 634, 647, 733
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HinfI	GANTC	2 cut(s)	262, 439
HpaII	CCGG	4 cut(s)	116, 129, 605, 758
HphI	GGTGA	3 cut(s)	620, 713, 765
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	3 cut(s)	474, 552, 781
Hpy188III	TCNNGA	3 cut(s)	272, 298, 328
Hpy8I	GTNNAC	1 cut(s)	529
HpyAV	CCTTC	2 cut(s)	320, 334
HpyCH4III	ACNGT	3 cut(s)	136, 589, 717
HpyCH4V	TGCA	6 cut(s)	182, 247, 488, 494, 569, 614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 244, 640, 745
HpyF3I	CTNAG	5 cut(s)	174, 316, 372, 639, 651
Hsp92II	CATG	4 cut(s)	402, 634, 647, 733
HspAI	GCGC	1 cut(s)	647
Kzo9I	GATC	4 cut(s)	4, 324, 547, 781
LmnI	GCTCC	6 cut(s)	53, 105, 140, 170, 667, 760
Lsp1109I	GCAGC	6 cut(s)	231, 478, 500, 760, 775, 778
LweI	GCATC	2 cut(s)	578, 601
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	286, 771
MalI	GATC	4 cut(s)	6, 326, 549, 783
MboI	GATC	4 cut(s)	4, 324, 547, 781
MboII	GAAGA	3 cut(s)	343, 461, 487
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	2 cut(s)	4, 547
MhlI	GDGCHC	4 cut(s)	58, 110, 175, 664
MluCI	AATT	3 cut(s)	59, 276, 573
MnlI	CCTC	8 cut(s)	343, 367, 456, 538, 553, 593, 648, 660
MroXI	GAANNNNTTC	1 cut(s)	589
MspA1I	CMGCKG	3 cut(s)	244, 371, 491
MspI	CCGG	4 cut(s)	116, 129, 605, 758
MspR9I	CCNGG	4 cut(s)	117, 394, 606, 666
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	2 cut(s)	394, 666
MwoI	GCNNNNNNNGC	4 cut(s)	179, 244, 640, 745
NciI	CCSGG	2 cut(s)	117, 606
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	4 cut(s)	4, 324, 547, 781
NlaIII	CATG	4 cut(s)	402, 634, 647, 733
NlaIV	GGNNCC	6 cut(s)	6, 107, 378, 663, 696, 756
NmuCI	GTSAC	1 cut(s)	771
NspI	RCATGY	3 cut(s)	402, 634, 647
PaeI	GCATGC	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	589
PfeI	GAWTC	2 cut(s)	262, 439
PflMI	CCANNNNNTGG	1 cut(s)	34
PkrI	GCNGC	7 cut(s)	246, 490, 493, 636, 750, 765, 768
PpuMI	RGGWCCY	1 cut(s)	562
Psp124BI	GAGCTC	2 cut(s)	58, 175
Psp5II	RGGWCCY	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	392, 664
PspGI	CCWGG	2 cut(s)	392, 664
PspN4I	GGNNCC	6 cut(s)	6, 107, 378, 663, 696, 756
PspPI	GGNCC	3 cut(s)	562, 602, 694
PspPPI	RGGWCCY	1 cut(s)	562
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	2 cut(s)	4, 547
PvuII	CAGCTG	3 cut(s)	244, 371, 491
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SacI	GAGCTC	2 cut(s)	58, 175
SatI	GCNGC	7 cut(s)	245, 489, 492, 635, 749, 764, 767
Sau3AI	GATC	4 cut(s)	4, 324, 547, 781
Sau96I	GGNCC	3 cut(s)	562, 602, 694
ScrFI	CCNGG	4 cut(s)	117, 394, 606, 666
SduI	GDGCHC	4 cut(s)	58, 110, 175, 664
SfaNI	GCATC	2 cut(s)	578, 601
SfcI	CTRYAG	1 cut(s)	594
SinI	GGWCC	2 cut(s)	562, 694
SpeI	ACTAGT	1 cut(s)	155
SphI	GCATGC	1 cut(s)	647
Sse9I	AATT	3 cut(s)	59, 276, 573
SsiI	CCGC	3 cut(s)	430, 460, 635
SspI	AATATT	1 cut(s)	387
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	2 cut(s)	58, 175
StyD4I	CCNGG	4 cut(s)	115, 392, 604, 664
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	3 cut(s)	136, 589, 717
TasI	AATT	3 cut(s)	59, 276, 573
TauI	GCSGC	1 cut(s)	637
TfiI	GAWTC	2 cut(s)	262, 439
TscAI	CASTG	2 cut(s)	55, 141
TseFI	GTSAC	1 cut(s)	771
TseI	GCWGC	6 cut(s)	244, 488, 491, 748, 763, 766
Tsp45I	GTSAC	1 cut(s)	771
TspDTI	ATGAA	2 cut(s)	353, 400
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	2 cut(s)	55, 141
Van91I	CCANNNNNTGG	1 cut(s)	34
VpaK11BI	GGWCC	2 cut(s)	562, 694
XagI	CCTNNNNNAGG	1 cut(s)	319
XceI	RCATGY	3 cut(s)	402, 634, 647
XmiI	GTMKAC	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	589
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.