Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Reverse (-)

29269117 .. 29271406

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1207500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGATCCGCAAGGGCATAACCAACCCCAATCTATGGGGATGGTAGGTAGTGGAGCTCAGTTGACATACGGTTCTAACCCGTATCAGCATAATCAAATGGTTGGGAGCCCAAATCCGGGGTCAGTTGCTGCAACAGTGGGAGCTATGCAGTCTGCTAGTCAATCACCTGGAGCTCAGCTTGCGCAGCACCAGCTTGCTTATCAGCATATCCACCAGCAGCAGCAGCAACAACTTCAGCAACAGCTGCAAACTTTCTGGGCAAATCAGTATCAAGAAATCGACAAGGTGACAGATTTCAAGAACCATAGCCTTCCCCTAGCAAGGATCAAGAAGATTATGAAGGCCGATGAGGATGTGAGAATGATATCAGCTGAGGCACCTGTGATATTTGCCAGGGCATGTGAAATGTTCATATTGGAATTGACATTGCGGTCGTGGAATCACACGGAAGAGAATAAGCGGAGGACACTCCAGAAGAATGACATTGCAGCTGCAATCACAAGGACAGATATCTTTGATTTCTTGGTAGACATTGTGCCCAGAGAGGATCTGAAAGATGAAGTCCTTGCATCGATTCCAAGGGGTACAGTGTCTGTTGGCGGGCCTGCTGATGCACTTCCATACTGCTATATGCCGCCTCAGCACGCACCTCAGGTGGGGGATCCCGGGATGATTATGGGTAAGCCTATGATGGATCCGTCTCTGTATGCTCAACAGTCTCACCCCAGCCAATGTGGCAGCAGGCACCGGACCAGCAGCAGTCACCATCAGATCATTAGCGGGCGCAACATCGAAGCGGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048519 GO:0048571 GO:0048573 GO:0048574 GO:0048579 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000242 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

269

Amino Acids

29.75

Weight (kDa)

6.16

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	95 - 166	1.4e-17	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	103 - 166	3.4e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
Acc16I	TGCGCA	1 cut(s)	183
AccB1I	GGYRCC	2 cut(s)	376, 744
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	7 cut(s)	8, 430, 460, 600, 635, 780, 797
AclWI	GGATC	7 cut(s)	12, 332, 555, 656, 669, 689, 702
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	5 cut(s)	34, 115, 116, 321, 656
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	2 cut(s)	166, 392
AluBI	AGCT	8 cut(s)	56, 143, 173, 178, 193, 244, 371, 491
AluI	AGCT	8 cut(s)	56, 143, 173, 178, 193, 244, 371, 491
Alw21I	GWGCWC	2 cut(s)	58, 175
Alw26I	GTCTC	2 cut(s)	705, 723
AlwI	GGATC	7 cut(s)	12, 332, 555, 656, 669, 689, 702
AlwNI	CAGNNNCTG	2 cut(s)	128, 593
Ama87I	CYCGRG	1 cut(s)	665
AoxI	GGCC	2 cut(s)	342, 602
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	2 cut(s)	184, 786
AspS9I	GGNCC	2 cut(s)	602, 750
AsuC2I	CCSGG	3 cut(s)	117, 666, 667
AsuHPI	GGTGA	4 cut(s)	156, 298, 713, 755
AvaI	CYCGRG	1 cut(s)	665
AvaII	GGWCC	1 cut(s)	750
AxyI	CCTNAGG	1 cut(s)	651
BaeGI	GKGCMC	1 cut(s)	540
BamHI	GGATCC	3 cut(s)	4, 661, 694
BanI	GGYRCC	2 cut(s)	376, 744
BanII	GRGCYC	3 cut(s)	58, 110, 175
Bbv12I	GWGCWC	2 cut(s)	58, 175
BbvCI	CCTCAGC	2 cut(s)	372, 639
BccI	CCATC	3 cut(s)	34, 685, 774
BciT130I	CCWGG	2 cut(s)	168, 394
BcnI	CCSGG	3 cut(s)	117, 666, 667
BcoDI	GTCTC	2 cut(s)	705, 723
BfaI	CTAG	2 cut(s)	156, 317
BglI	GCCNNNNNGGC	1 cut(s)	735
BlpI	GCTNAGC	1 cut(s)	174
Bme1390I	CCNGG	5 cut(s)	117, 168, 394, 666, 667
Bme18I	GGWCC	1 cut(s)	750
BmeT110I	CYCGRG	1 cut(s)	665
BmgT120I	GGNCC	2 cut(s)	602, 750
BmiI	GGNNCC	6 cut(s)	6, 107, 378, 663, 696, 746
BmrFI	CCNGG	5 cut(s)	117, 168, 394, 666, 667
BmsI	GCATC	2 cut(s)	578, 601
BpmI	CTGGAG	2 cut(s)	189, 455
Bpu10I	CCTNAGC	2 cut(s)	372, 639
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	3 cut(s)	117, 666, 667
Bsa29I	ATCGAT	1 cut(s)	572
BsaJI	CCNNGG	4 cut(s)	116, 393, 578, 665
BsaWI	WCCGGW	1 cut(s)	747
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 115, 116, 321, 656
Bse21I	CCTNAGG	1 cut(s)	651
Bse3DI	GCAATG	2 cut(s)	425, 483
BseBI	CCWGG	2 cut(s)	168, 394
BseCI	ATCGAT	1 cut(s)	572
BseDI	CCNNGG	4 cut(s)	116, 393, 578, 665
BseGI	GGATG	3 cut(s)	45, 358, 675
BseLI	CCNNNNNNNGG	5 cut(s)	34, 115, 116, 321, 656
BseMI	GCAATG	2 cut(s)	425, 483
BseMII	CTCAG	5 cut(s)	71, 188, 363, 653, 665
BseSI	GKGCMC	1 cut(s)	540
BseYI	CCCAGC	1 cut(s)	725
Bsh1285I	CGRYCG	1 cut(s)	434
BshFI	GGCC	2 cut(s)	344, 604
BshNI	GGYRCC	2 cut(s)	376, 744
BshVI	ATCGAT	1 cut(s)	572
BsiEI	CGRYCG	1 cut(s)	434
BsiHKAI	GWGCWC	2 cut(s)	58, 175
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	3 cut(s)	116, 666, 748
BslI	CCNNNNNNNGG	5 cut(s)	34, 115, 116, 321, 656
BsmAI	GTCTC	2 cut(s)	705, 723
BsmBI	CGTCTC	1 cut(s)	705
BsnI	GGCC	2 cut(s)	344, 604
BsoBI	CYCGRG	1 cut(s)	665
Bsp1286I	GDGCHC	4 cut(s)	58, 110, 175, 540
Bsp143I	GATC	6 cut(s)	4, 324, 547, 661, 694, 771
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	7 cut(s)	8, 430, 460, 600, 635, 780, 797
BspANI	GGCC	2 cut(s)	344, 604
BspCNI	CTCAG	5 cut(s)	70, 187, 364, 652, 664
BspDI	ATCGAT	1 cut(s)	572
BspLI	GGNNCC	6 cut(s)	6, 107, 378, 663, 696, 746
BspPI	GGATC	7 cut(s)	12, 332, 555, 656, 669, 689, 702
BspT107I	GGYRCC	2 cut(s)	376, 744
BsrDI	GCAATG	2 cut(s)	425, 483
BssECI	CCNNGG	4 cut(s)	116, 393, 578, 665
BssMI	GATC	6 cut(s)	4, 324, 547, 661, 694, 771
BssT1I	CCWWGG	1 cut(s)	578
Bst2UI	CCWGG	2 cut(s)	168, 394
Bst4CI	ACNGT	4 cut(s)	71, 136, 589, 717
Bst6I	CTCTTC	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstC8I	GCNNGC	7 cut(s)	180, 195, 602, 606, 645, 743, 782
BstDEI	CTNAG	5 cut(s)	57, 174, 372, 639, 651
BstF5I	GGATG	3 cut(s)	45, 358, 675
BstHHI	GCGC	2 cut(s)	184, 786
BstKTI	GATC	6 cut(s)	7, 327, 550, 664, 697, 774
BstMAI	GTCTC	2 cut(s)	705, 723
BstMBI	GATC	6 cut(s)	4, 324, 547, 661, 694, 771
BstMCI	CGRYCG	1 cut(s)	434
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 184, 190, 223, 244, 640, 735
BstNI	CCWGG	2 cut(s)	168, 394
BstNSI	RCATGY	1 cut(s)	402
BstSCI	CCNGG	5 cut(s)	115, 166, 392, 664, 665
BstSLI	GKGCMC	1 cut(s)	540
BstX2I	RGATCY	4 cut(s)	4, 547, 661, 694
BstYI	RGATCY	4 cut(s)	4, 547, 661, 694
Bsu15I	ATCGAT	1 cut(s)	572
Bsu36I	CCTNAGG	1 cut(s)	651
BsuRI	GGCC	2 cut(s)	344, 604
BsuTUI	ATCGAT	1 cut(s)	572
BtsCI	GGATG	3 cut(s)	45, 358, 675
BtsIMutI	CAGTG	2 cut(s)	141, 594
Cac8I	GCNNGC	7 cut(s)	180, 195, 602, 606, 645, 743, 782
CaiI	CAGNNNCTG	2 cut(s)	128, 593
CfoI	GCGC	2 cut(s)	184, 786
Cfr13I	GGNCC	2 cut(s)	602, 750
Cfr9I	CCCGGG	1 cut(s)	665
ClaI	ATCGAT	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	585
CviAII	CATG	1 cut(s)	399
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	5 cut(s)	57, 174, 372, 639, 651
DpnI	GATC	6 cut(s)	6, 326, 549, 663, 696, 773
DpnII	GATC	6 cut(s)	4, 324, 547, 661, 694, 771
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Ecl136II	GAGCTC	2 cut(s)	56, 173
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	3 cut(s)	58, 110, 175
Eco32I	GATATC	2 cut(s)	366, 511
Eco47I	GGWCC	1 cut(s)	750
Eco53kI	GAGCTC	2 cut(s)	56, 173
Eco57I	CTGAAG	1 cut(s)	218
Eco81I	CCTNAGG	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	665
EcoICRI	GAGCTC	2 cut(s)	56, 173
EcoRII	CCWGG	2 cut(s)	166, 392
EcoRV	GATATC	2 cut(s)	366, 511
EcoT14I	CCWWGG	1 cut(s)	578
EcoT38I	GRGCYC	3 cut(s)	58, 110, 175
ErhI	CCWWGG	1 cut(s)	578
Esp3I	CGTCTC	1 cut(s)	705
FaeI	CATG	1 cut(s)	402
FatI	CATG	1 cut(s)	398
FauI	CCCGC	2 cut(s)	593, 773
FblI	GTMKAC	1 cut(s)	528
FokI	GGATG	3 cut(s)	52, 365, 682
FriOI	GRGCYC	3 cut(s)	58, 110, 175
FspBI	CTAG	2 cut(s)	156, 317
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	2 cut(s)	183, 785
GsaI	CCCAGC	1 cut(s)	729
GsuI	CTGGAG	2 cut(s)	189, 455
HaeIII	GGCC	2 cut(s)	344, 604
HapII	CCGG	3 cut(s)	116, 666, 748
HhaI	GCGC	2 cut(s)	184, 786
Hin1II	CATG	1 cut(s)	402
Hin6I	GCGC	2 cut(s)	182, 784
HinP1I	GCGC	2 cut(s)	182, 784
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	2 cut(s)	439, 574
HpaII	CCGG	3 cut(s)	116, 666, 748
HphI	GGTGA	4 cut(s)	156, 298, 713, 755
Hpy166II	GTNNAC	2 cut(s)	63, 529
Hpy188I	TCNGA	2 cut(s)	552, 771
Hpy188III	TCNNGA	4 cut(s)	272, 298, 328, 472
Hpy8I	GTNNAC	2 cut(s)	63, 529
HpyAV	CCTTC	2 cut(s)	320, 334
HpyCH4III	ACNGT	4 cut(s)	71, 136, 589, 717
HpyCH4V	TGCA	7 cut(s)	131, 148, 247, 488, 494, 569, 614
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 184, 190, 223, 244, 640, 735
HpyF3I	CTNAG	5 cut(s)	57, 174, 372, 639, 651
Hsp92II	CATG	1 cut(s)	402
HspAI	GCGC	2 cut(s)	182, 784
Kzo9I	GATC	6 cut(s)	4, 324, 547, 661, 694, 771
LmnI	GCTCC	4 cut(s)	53, 105, 140, 170
LweI	GCATC	2 cut(s)	578, 601
MaeI	CTAG	2 cut(s)	156, 317
MaeIII	GTNAC	2 cut(s)	286, 761
MalI	GATC	6 cut(s)	6, 326, 549, 663, 696, 773
MboI	GATC	6 cut(s)	4, 324, 547, 661, 694, 771
MboII	GAAGA	3 cut(s)	343, 461, 487
MflI	RGATCY	4 cut(s)	4, 547, 661, 694
MhlI	GDGCHC	4 cut(s)	58, 110, 175, 540
MluCI	AATT	1 cut(s)	419
MnlI	CCTC	6 cut(s)	343, 367, 456, 538, 648, 660
MspA1I	CMGCKG	3 cut(s)	244, 371, 491
MspI	CCGG	3 cut(s)	116, 666, 748
MspR9I	CCNGG	5 cut(s)	117, 168, 394, 666, 667
MvaI	CCWGG	2 cut(s)	168, 394
MwoI	GCNNNNNNNGC	7 cut(s)	179, 184, 190, 223, 244, 640, 735
NciI	CCSGG	3 cut(s)	117, 666, 667
NdeII	GATC	6 cut(s)	4, 324, 547, 661, 694, 771
NlaIII	CATG	1 cut(s)	402
NlaIV	GGNNCC	6 cut(s)	6, 107, 378, 663, 696, 746
NmuCI	GTSAC	2 cut(s)	286, 761
NsbI	TGCGCA	1 cut(s)	183
NspI	RCATGY	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	439, 574
PflMI	CCANNNNNTGG	1 cut(s)	34
Psp124BI	GAGCTC	2 cut(s)	58, 175
Psp6I	CCWGG	2 cut(s)	166, 392
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	2 cut(s)	166, 392
PspN4I	GGNNCC	6 cut(s)	6, 107, 378, 663, 696, 746
PspPI	GGNCC	2 cut(s)	602, 750
PstNI	CAGNNNCTG	2 cut(s)	128, 593
PsuI	RGATCY	4 cut(s)	4, 547, 661, 694
PvuII	CAGCTG	3 cut(s)	244, 371, 491
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
SacI	GAGCTC	2 cut(s)	58, 175
Sau3AI	GATC	6 cut(s)	4, 324, 547, 661, 694, 771
Sau96I	GGNCC	2 cut(s)	602, 750
ScrFI	CCNGG	5 cut(s)	117, 168, 394, 666, 667
SduI	GDGCHC	4 cut(s)	58, 110, 175, 540
SfaNI	GCATC	2 cut(s)	578, 601
SinI	GGWCC	1 cut(s)	750
SmaI	CCCGGG	1 cut(s)	667
Sse9I	AATT	1 cut(s)	419
SsiI	CCGC	7 cut(s)	8, 430, 460, 600, 635, 780, 797
SspMI	CTAG	2 cut(s)	156, 317
SstI	GAGCTC	2 cut(s)	58, 175
StyD4I	CCNGG	5 cut(s)	115, 166, 392, 664, 665
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	4 cut(s)	71, 136, 589, 717
TaqI	TCGA	3 cut(s)	279, 572, 792
TasI	AATT	1 cut(s)	419
TauI	GCSGC	1 cut(s)	637
TfiI	GAWTC	2 cut(s)	439, 574
TscAI	CASTG	2 cut(s)	141, 594
TseFI	GTSAC	2 cut(s)	286, 761
Tsp45I	GTSAC	2 cut(s)	286, 761
TspDTI	ATGAA	3 cut(s)	353, 400, 573
TspGWI	ACGGA	2 cut(s)	461, 687
TspMI	CCCGGG	1 cut(s)	665
TspRI	CASTG	2 cut(s)	141, 594
Van91I	CCANNNNNTGG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	750
XceI	RCATGY	1 cut(s)	402
XmaI	CCCGGG	1 cut(s)	665
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	2 cut(s)	156, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.