Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Forward (+)

22549196 .. 22549899

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007894

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGATCAGCAAGGGCATGGGCATCCAACAACAATGGGAGTCCCAGGTAGTGCAGGTCAAGCATCATATGGTGTGAACCCATATCAGCCTAGCCAAATGATGGGACTCTCTCCAACTGGATCGGTTGGAATGATGCAATCTCCCACTCACCCGGGAGGTCCTTCTGCCCATTCTCAGCTTGCACAACACCAAGCTTATCAGCACATCCACCAGCAACAACAACAGCAACTACAGCAACAACTCCAAAACTTTTGGACAGGTCAGTATCAAGAAATTGAGCAGGCTAATGATTTCAAGAACCATAGTTTACCATTGGCCAGGATTAAGAAGATTATGAAGGCTGATGAGGATGTAAGGAGAACACACATTGATATCGTCCCCAGAGAGGATTTGAAAGATGAGGTTCTTGCATCAATCCCAAGAGGTGGGAATGTTCCAGTTGTCGGTCCTGCTGATGGTCTTCCTTACTATTACATGCCTGCTCAACATCCACCACAGGTTGGTGCTCCTGGGATGATGGTGGGAAAGCCTGTGATGGATCAAAATATGTATGGCCAACCAACACATCCATACATGGCCTCAGCAACAACAACTGCACAAAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

203

Amino Acids

22.2

Weight (kDa)

6.58

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	44
AccB7I	CCANNNNNTGG	3 cut(s)	100, 425, 500
AclWI	GGATC	3 cut(s)	12, 127, 546
AcoI	YGGCCR	2 cut(s)	315, 553
AfiI	CCNNNNNNNGG	6 cut(s)	100, 385, 425, 443, 455, 500
AgsI	TTSAA	2 cut(s)	295, 394
AjnI	CCWGG	3 cut(s)	43, 317, 508
AluBI	AGCT	2 cut(s)	178, 194
AluI	AGCT	2 cut(s)	178, 194
Alw21I	GWGCWC	1 cut(s)	508
AlwI	GGATC	3 cut(s)	12, 127, 546
Ama87I	CYCGRG	1 cut(s)	151
AoxI	GGCC	3 cut(s)	315, 553, 576
AspS9I	GGNCC	2 cut(s)	158, 446
AsuC2I	CCSGG	2 cut(s)	152, 153
AsuHPI	GGTGA	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	2 cut(s)	158, 446
BalI	TGGCCA	2 cut(s)	317, 555
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	508
BbvCI	CCTCAGC	1 cut(s)	580
BccI	CCATC	4 cut(s)	94, 449, 511, 529
BciT130I	CCWGG	3 cut(s)	45, 319, 510
BcnI	CCSGG	2 cut(s)	152, 153
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	44
Bme1390I	CCNGG	5 cut(s)	45, 152, 153, 319, 510
Bme18I	GGWCC	2 cut(s)	158, 446
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	158, 446
BmrFI	CCNGG	5 cut(s)	45, 152, 153, 319, 510
BmsI	GCATC	4 cut(s)	31, 71, 123, 419
BpiI	GAAGAC	1 cut(s)	452
Bpu10I	CCTNAGC	1 cut(s)	580
BpuMI	CCSGG	2 cut(s)	152, 153
BsaJI	CCNNGG	3 cut(s)	43, 151, 509
Bsc4I	CCNNNNNNNGG	6 cut(s)	100, 385, 425, 443, 455, 500
Bse1I	ACTGG	2 cut(s)	121, 437
BseBI	CCWGG	3 cut(s)	45, 319, 510
BseDI	CCNNGG	3 cut(s)	43, 151, 509
BseGI	GGATG	6 cut(s)	22, 204, 355, 487, 519, 565
BseLI	CCNNNNNNNGG	6 cut(s)	100, 385, 425, 443, 455, 500
BseMII	CTCAG	2 cut(s)	188, 594
BseNI	ACTGG	2 cut(s)	121, 437
BsgI	GTGCAG	2 cut(s)	72, 579
BshFI	GGCC	3 cut(s)	317, 555, 578
BsiHKAI	GWGCWC	1 cut(s)	508
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	3 cut(s)	26, 117, 362
BslI	CCNNNNNNNGG	6 cut(s)	100, 385, 425, 443, 455, 500
BsmFI	GGGAC	3 cut(s)	26, 117, 362
BsnI	GGCC	3 cut(s)	317, 555, 578
BsoBI	CYCGRG	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	3 cut(s)	4, 119, 538
BspANI	GGCC	3 cut(s)	317, 555, 578
BspCNI	CTCAG	2 cut(s)	187, 593
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	3 cut(s)	12, 127, 546
BsrI	ACTGG	2 cut(s)	121, 437
BssECI	CCNNGG	3 cut(s)	43, 151, 509
BssMI	GATC	3 cut(s)	4, 119, 538
Bst2UI	CCWGG	3 cut(s)	45, 319, 510
BstC8I	GCNNGC	3 cut(s)	180, 282, 480
BstDEI	CTNAG	2 cut(s)	174, 580
BstF5I	GGATG	6 cut(s)	22, 204, 355, 487, 519, 565
BstKTI	GATC	3 cut(s)	7, 122, 541
BstMBI	GATC	3 cut(s)	4, 119, 538
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 232
BstNI	CCWGG	3 cut(s)	45, 319, 510
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	5 cut(s)	43, 150, 151, 317, 508
BstSFI	CTRYAG	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	452
BsuRI	GGCC	3 cut(s)	317, 555, 578
BtsCI	GGATG	6 cut(s)	22, 204, 355, 487, 519, 565
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	3 cut(s)	180, 282, 480
Cfr13I	GGNCC	2 cut(s)	158, 446
Cfr9I	CCCGGG	1 cut(s)	151
CviAII	CATG	3 cut(s)	17, 475, 574
DdeI	CTNAG	2 cut(s)	174, 580
DpnI	GATC	3 cut(s)	6, 121, 540
DpnII	GATC	3 cut(s)	4, 119, 538
EaeI	YGGCCR	2 cut(s)	315, 553
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	158, 446
Eco88I	CYCGRG	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	3 cut(s)	43, 317, 508
EcoRV	GATATC	1 cut(s)	373
FaeI	CATG	3 cut(s)	20, 478, 577
FaqI	GGGAC	3 cut(s)	26, 117, 362
FatI	CATG	3 cut(s)	16, 474, 573
FauNDI	CATATG	1 cut(s)	67
FokI	GGATG	6 cut(s)	9, 191, 362, 474, 526, 552
FspBI	CTAG	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	317, 555, 578
HapII	CCGG	1 cut(s)	152
Hin1II	CATG	3 cut(s)	20, 478, 577
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	2 cut(s)	39, 105
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	76, 308
Hpy188III	TCNNGA	2 cut(s)	269, 295
Hpy8I	GTNNAC	2 cut(s)	76, 308
HpyAV	CCTTC	2 cut(s)	171, 331
HpyCH4V	TGCA	5 cut(s)	53, 136, 182, 410, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 232
HpyF3I	CTNAG	2 cut(s)	174, 580
Hsp92II	CATG	3 cut(s)	20, 478, 577
Kzo9I	GATC	3 cut(s)	4, 119, 538
LmnI	GCTCC	1 cut(s)	511
LweI	GCATC	4 cut(s)	31, 71, 123, 419
MaeI	CTAG	1 cut(s)	90
MalI	GATC	3 cut(s)	6, 121, 540
MboI	GATC	3 cut(s)	4, 119, 538
MboII	GAAGA	2 cut(s)	340, 452
MhlI	GDGCHC	1 cut(s)	508
MlsI	TGGCCA	2 cut(s)	317, 555
MluCI	AATT	1 cut(s)	273
MluNI	TGGCCA	2 cut(s)	317, 555
MlyI	GAGTC	2 cut(s)	48, 99
MmeI	TCCRAC	3 cut(s)	50, 106, 137
MnlI	CCTC	6 cut(s)	149, 340, 379, 394, 416, 589
Mox20I	TGGCCA	2 cut(s)	317, 555
MscI	TGGCCA	2 cut(s)	317, 555
MseI	TTAA	1 cut(s)	324
Msp20I	TGGCCA	2 cut(s)	317, 555
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	5 cut(s)	45, 152, 153, 319, 510
MvaI	CCWGG	3 cut(s)	45, 319, 510
MwoI	GCNNNNNNNGC	2 cut(s)	59, 232
NciI	CCSGG	2 cut(s)	152, 153
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	3 cut(s)	4, 119, 538
NlaIII	CATG	3 cut(s)	20, 478, 577
NspI	RCATGY	1 cut(s)	478
PflMI	CCANNNNNTGG	3 cut(s)	100, 425, 500
PleI	GAGTC	2 cut(s)	47, 99
PpsI	GAGTC	2 cut(s)	47, 99
PpuMI	RGGWCCY	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	3 cut(s)	43, 317, 508
PspGI	CCWGG	3 cut(s)	43, 317, 508
PspPI	GGNCC	2 cut(s)	158, 446
PspPPI	RGGWCCY	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	3 cut(s)	4, 119, 538
Sau96I	GGNCC	2 cut(s)	158, 446
SchI	GAGTC	2 cut(s)	48, 99
ScrFI	CCNGG	5 cut(s)	45, 152, 153, 319, 510
SduI	GDGCHC	1 cut(s)	508
SetI	ASST	9 cut(s)	49, 58, 160, 180, 196, 262, 405, 427, 501
SfaNI	GCATC	4 cut(s)	31, 71, 123, 419
SfcI	CTRYAG	1 cut(s)	230
SinI	GGWCC	2 cut(s)	158, 446
SmaI	CCCGGG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	5 cut(s)	43, 150, 151, 317, 508
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TspDTI	ATGAA	1 cut(s)	350
TspMI	CCCGGG	1 cut(s)	151
Van91I	CCANNNNNTGG	3 cut(s)	100, 425, 500
VpaK11BI	GGWCC	2 cut(s)	158, 446
XceI	RCATGY	1 cut(s)	478
XmaI	CCCGGG	1 cut(s)	151
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.