Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Forward (+)

3882180 .. 3885083

Gene Structure 2904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G004450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATCAGCAAGGACATGGGCAACCCCAATCTATGGGGATGGTAGGTAGTGGAGCTCAATTGGCATATGGGACTGCTCCGTATCAGCATACTCAAATGGTAGGGAGTCCGAATCCTGCTACAGTTGGTGCACCAGTTGGAGGCATTCAATCTAGTAGTCAATCTGCCGGAGCTCAGCTTCAACAGCATCAACTTGCTTATCAGCACATTCACCAGCAGCAGCAGCAACAACTTCAACAACAACTGCAAAGTTTCTGGGCAAATCAGTTTCAAGAGATTGAGAAGGTAACTGATTTCAAGAACCATAGCCTTCCTCTAGCAAGGATCAAGAAGATTATGAAAGCTGATGAGGATGTGAGAATGATATCAGCTGAGGCACCTGTGATCTTTGCAAGGGCATGTGAAATGTTCATCTTGGAGTTGACCTTGCGGTCTTGGAATCACACAGAAGAGAATAAAAGGCGGACACTTCAAAAGAATGACATTGCAGCTGCAATCACAAGGACTGATATCTTTGATTTCTTGGTAGACATCGTGCCGAGAGAGGATCTGAAAGATGAAGTCCTTGCATCCATTCCAAGGGGAACGGTTTCTGTTGGGGCTGCTGATGCACTTCCTCCATACTGCTATATGCCACCTCAGCATGGATCTCAGGTGGGGGCTCCTGGGATGATCATGGGCAAGCCTATGATGGACCCATCTATGTATGGGCAACAGTCTCACCCCTACATGGCTCCGCAAATGTGGCCGCAGGCACCGGAGCAGCAGCAGCAACAGCAACAGTCACCATCTGATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048519 GO:0048571 GO:0048573 GO:0048574 GO:0048579 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000242 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

266

Amino Acids

29.57

Weight (kDa)

5.89

Isoelectric Point (pI)

69.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	94 - 166	1.2e-17	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	103 - 166	3.3e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
AccB1I	GGYRCC	2 cut(s)	376, 754
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	4 cut(s)	430, 463, 737, 749
AclWI	GGATC	4 cut(s)	12, 332, 555, 655
AcoI	YGGCCR	1 cut(s)	746
AfiI	CCNNNNNNNGG	5 cut(s)	34, 140, 579, 644, 730
AgsI	TTSAA	6 cut(s)	149, 182, 236, 272, 298, 473
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	6 cut(s)	56, 173, 178, 344, 371, 491
AluI	AGCT	6 cut(s)	56, 173, 178, 344, 371, 491
Alw21I	GWGCWC	3 cut(s)	58, 133, 175
Alw26I	GTCTC	1 cut(s)	723
Alw44I	GTGCAC	1 cut(s)	129
AlwI	GGATC	4 cut(s)	12, 332, 555, 655
AoxI	GGCC	1 cut(s)	746
ApaLI	GTGCAC	1 cut(s)	129
ApeKI	GCWGC	9 cut(s)	217, 220, 223, 488, 491, 602, 763, 766, 769
Asp700I	GAANNNNTTC	1 cut(s)	589
AspS9I	GGNCC	1 cut(s)	694
AsuHPI	GGTGA	3 cut(s)	203, 713, 777
AvaII	GGWCC	1 cut(s)	694
BaeGI	GKGCMC	1 cut(s)	133
BanI	GGYRCC	2 cut(s)	376, 754
BanII	GRGCYC	3 cut(s)	58, 175, 664
Bbv12I	GWGCWC	3 cut(s)	58, 133, 175
BbvCI	CCTCAGC	2 cut(s)	372, 639
BbvI	GCAGC	9 cut(s)	229, 232, 235, 478, 500, 589, 775, 778, 781
BccI	CCATC	4 cut(s)	34, 685, 706, 796
BciT130I	CCWGG	1 cut(s)	666
BclI	TGATCA	2 cut(s)	672, 793
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	2 cut(s)	153, 317
BfmI	CTRYAG	1 cut(s)	120
BlpI	GCTNAGC	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	666
Bme18I	GGWCC	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	5 cut(s)	378, 663, 696, 735, 756
BmrFI	CCNGG	1 cut(s)	666
BmsI	GCATC	3 cut(s)	196, 578, 598
Bpu10I	CCTNAGC	2 cut(s)	372, 639
Bpu1102I	GCTNAGC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	578, 665
BsaWI	WCCGGW	1 cut(s)	757
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 140, 579, 644, 730
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	578, 665
BseGI	GGATG	4 cut(s)	45, 358, 569, 675
BseLI	CCNNNNNNNGG	5 cut(s)	34, 140, 579, 644, 730
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	4 cut(s)	188, 363, 653, 665
BseNI	ACTGG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	9 cut(s)	229, 232, 235, 478, 500, 589, 775, 778, 781
BshFI	GGCC	1 cut(s)	748
BshNI	GGYRCC	2 cut(s)	376, 754
BsiHKAI	GWGCWC	3 cut(s)	58, 133, 175
BsiSI	CCGG	2 cut(s)	168, 758
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	5 cut(s)	34, 140, 579, 644, 730
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	748
Bsp1286I	GDGCHC	4 cut(s)	58, 133, 175, 664
Bsp143I	GATC	7 cut(s)	4, 324, 384, 547, 647, 672, 793
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	4 cut(s)	430, 463, 737, 749
BspANI	GGCC	1 cut(s)	748
BspCNI	CTCAG	4 cut(s)	187, 364, 652, 664
BspLI	GGNNCC	5 cut(s)	378, 663, 696, 735, 756
BspPI	GGATC	4 cut(s)	12, 332, 555, 655
BspT107I	GGYRCC	2 cut(s)	376, 754
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	578, 665
BssMI	GATC	7 cut(s)	4, 324, 384, 547, 647, 672, 793
BssT1I	CCWWGG	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	4 cut(s)	124, 589, 717, 783
Bst6I	CTCTTC	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	683, 753
BstDEI	CTNAG	4 cut(s)	174, 372, 639, 651
BstF5I	GGATG	4 cut(s)	45, 358, 569, 675
BstKTI	GATC	7 cut(s)	7, 327, 387, 550, 650, 675, 796
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	7 cut(s)	4, 324, 384, 547, 647, 672, 793
BstMWI	GCNNNNNNNGC	8 cut(s)	62, 184, 223, 608, 640, 745, 769, 775
BstNI	CCWGG	1 cut(s)	666
BstNSI	RCATGY	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	664
BstSFI	CTRYAG	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	133
BstV1I	GCAGC	9 cut(s)	229, 232, 235, 478, 500, 589, 775, 778, 781
BstX2I	RGATCY	2 cut(s)	547, 647
BstYI	RGATCY	2 cut(s)	547, 647
BsuRI	GGCC	1 cut(s)	748
BtsCI	GGATG	4 cut(s)	45, 358, 569, 675
Cac8I	GCNNGC	2 cut(s)	683, 753
Cfr13I	GGNCC	1 cut(s)	694
CviAII	CATG	5 cut(s)	17, 399, 644, 676, 730
DdeI	CTNAG	4 cut(s)	174, 372, 639, 651
DpnI	GATC	7 cut(s)	6, 326, 386, 549, 649, 674, 795
DpnII	GATC	7 cut(s)	4, 324, 384, 547, 647, 672, 793
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	746
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
EciI	GGCGGA	1 cut(s)	478
Ecl136II	GAGCTC	2 cut(s)	56, 173
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	3 cut(s)	58, 175, 664
Eco32I	GATATC	2 cut(s)	366, 511
Eco47I	GGWCC	1 cut(s)	694
Eco53kI	GAGCTC	2 cut(s)	56, 173
EcoICRI	GAGCTC	2 cut(s)	56, 173
EcoRII	CCWGG	1 cut(s)	664
EcoRV	GATATC	2 cut(s)	366, 511
EcoT14I	CCWWGG	1 cut(s)	578
EcoT38I	GRGCYC	3 cut(s)	58, 175, 664
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	5 cut(s)	20, 402, 647, 679, 733
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	5 cut(s)	16, 398, 643, 675, 729
FauNDI	CATATG	1 cut(s)	67
FbaI	TGATCA	2 cut(s)	672, 793
FblI	GTMKAC	1 cut(s)	528
FokI	GGATG	4 cut(s)	52, 365, 556, 682
FriOI	GRGCYC	3 cut(s)	58, 175, 664
FspBI	CTAG	2 cut(s)	153, 317
HaeIII	GGCC	1 cut(s)	748
HapII	CCGG	2 cut(s)	168, 758
Hin1II	CATG	5 cut(s)	20, 402, 647, 679, 733
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	3 cut(s)	106, 112, 439
HpaII	CCGG	2 cut(s)	168, 758
HphI	GGTGA	3 cut(s)	203, 713, 777
Hpy166II	GTNNAC	3 cut(s)	131, 423, 529
Hpy188I	TCNGA	3 cut(s)	111, 552, 793
Hpy188III	TCNNGA	3 cut(s)	272, 298, 328
Hpy8I	GTNNAC	3 cut(s)	131, 423, 529
HpyAV	CCTTC	2 cut(s)	277, 320
HpyCH4III	ACNGT	4 cut(s)	124, 589, 717, 783
HpyCH4V	TGCA	7 cut(s)	131, 247, 392, 488, 494, 569, 611
HpyF10VI	GCNNNNNNNGC	8 cut(s)	62, 184, 223, 608, 640, 745, 769, 775
HpyF3I	CTNAG	4 cut(s)	174, 372, 639, 651
Hsp92II	CATG	5 cut(s)	20, 402, 647, 679, 733
Ksp22I	TGATCA	2 cut(s)	672, 793
Kzo9I	GATC	7 cut(s)	4, 324, 384, 547, 647, 672, 793
LmnI	GCTCC	6 cut(s)	53, 82, 170, 667, 739, 760
Lsp1109I	GCAGC	9 cut(s)	229, 232, 235, 478, 500, 589, 775, 778, 781
LweI	GCATC	3 cut(s)	196, 578, 598
MaeI	CTAG	2 cut(s)	153, 317
MaeIII	GTNAC	2 cut(s)	286, 783
MalI	GATC	7 cut(s)	6, 326, 386, 549, 649, 674, 795
MboI	GATC	7 cut(s)	4, 324, 384, 547, 647, 672, 793
MboII	GAAGA	2 cut(s)	343, 461
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	2 cut(s)	547, 647
MhlI	GDGCHC	4 cut(s)	58, 133, 175, 664
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	7 cut(s)	134, 324, 343, 367, 538, 627, 648
MroXI	GAANNNNTTC	1 cut(s)	589
MspA1I	CMGCKG	2 cut(s)	371, 491
MspI	CCGG	2 cut(s)	168, 758
MspR9I	CCNGG	1 cut(s)	666
MunI	CAATTG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	8 cut(s)	62, 184, 223, 608, 640, 745, 769, 775
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	7 cut(s)	4, 324, 384, 547, 647, 672, 793
NlaIII	CATG	5 cut(s)	20, 402, 647, 679, 733
NlaIV	GGNNCC	5 cut(s)	378, 663, 696, 735, 756
NmeAIII	GCCGAG	1 cut(s)	564
NmuCI	GTSAC	1 cut(s)	783
NspI	RCATGY	1 cut(s)	402
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	589
PfeI	GAWTC	2 cut(s)	112, 439
PflMI	CCANNNNNTGG	1 cut(s)	34
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Psp124BI	GAGCTC	2 cut(s)	58, 175
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	5 cut(s)	378, 663, 696, 735, 756
PspPI	GGNCC	1 cut(s)	694
PsuI	RGATCY	2 cut(s)	547, 647
PvuII	CAGCTG	2 cut(s)	371, 491
SacI	GAGCTC	2 cut(s)	58, 175
Sau3AI	GATC	7 cut(s)	4, 324, 384, 547, 647, 672, 793
Sau96I	GGNCC	1 cut(s)	694
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	666
SduI	GDGCHC	4 cut(s)	58, 133, 175, 664
SfaNI	GCATC	3 cut(s)	196, 578, 598
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	694
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	4 cut(s)	430, 463, 737, 749
SspMI	CTAG	2 cut(s)	153, 317
SstI	GAGCTC	2 cut(s)	58, 175
StyD4I	CCNGG	1 cut(s)	664
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	4 cut(s)	124, 589, 717, 783
TasI	AATT	1 cut(s)	59
TauI	GCSGC	1 cut(s)	751
TfiI	GAWTC	2 cut(s)	112, 439
TseFI	GTSAC	1 cut(s)	783
TseI	GCWGC	9 cut(s)	217, 220, 223, 488, 491, 602, 763, 766, 769
Tsp45I	GTSAC	1 cut(s)	783
TspDTI	ATGAA	3 cut(s)	353, 400, 573
TspGWI	ACGGA	1 cut(s)	69
Van91I	CCANNNNNTGG	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	694
XceI	RCATGY	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	589
XspI	CTAG	2 cut(s)	153, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.