Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Reverse (-)

29861745 .. 29864137

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1221800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGATCCGCAAGGGCATAACCAACCCCAATCTATGGGGATGGTAGGTAGTGGAGCTCAGTTGACTTACGGTTCTAACCCTTATCAGCATAATCAAATGGTTGGGAGCCCAAATCCGGGGTCAGTTTCCGCAACAGTGGGAGCTATGCAATCCGCTAGCCAATCACCTGGAGCTCAGCTTGCGCAGCACCAGCTTGCTTATCAGCATATCCACCAGCAGCAGCAGCAACAACTTCAGCAGCAGCTGCAAACTTTCTGGGCAAACCAGTATCAAGAAATCGACAAGGTCACTGATTTCAAGAACCATAGCCTTCCCTTGGCAAGGATCAAGAAGATTATGAAGGCCGATGAGGATGTGAGAATGATATCAGCCGAGGCACCTGTGATATTTGCCAGGGCATGTGAAATGTTCATATTGGAATTGACATTGAGGTCTTGGAATCACACGGAAGAGAACAAGCGGAGGACACTCCAGAAGAATGACATTGCAGCTGCAATCACAAGGACTGATATCTTTGATTTCTTGGTAGACATTGTCCCAAGGGAGGATCTGAAAGATGAAGTCCTTGGGTCAATTCCGAGGGGTACAGTTTCTGTTGGGGGGCCTGCCGATGCACTTCCATACTGCTATATGCCACCTCAGCACGCACCTCAGGTGGGGGCTCCTGGAATGATGATGGGTAAGCCTATGATGGATCCGTCTATGTATGCTCAGCAGTCTAACCCCTACATGACTCAGCCAATGTGGCAGCAGGCTCCAGACCAGCAGCAGTCGCCATCAGATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048519 GO:0048571 GO:0048573 GO:0048574 GO:0048579 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000242 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

263

Amino Acids

29.22

Weight (kDa)

5.8

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	95 - 166	1.3e-17	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	103 - 166	3.2e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
Acc16I	TGCGCA	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	4 cut(s)	8, 129, 153, 460
AclWI	GGATC	5 cut(s)	12, 332, 555, 689, 702
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	7 cut(s)	34, 115, 116, 316, 321, 544, 656
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	3 cut(s)	166, 392, 664
AluBI	AGCT	7 cut(s)	56, 143, 173, 178, 193, 244, 491
AluI	AGCT	7 cut(s)	56, 143, 173, 178, 193, 244, 491
Alw21I	GWGCWC	2 cut(s)	58, 175
AlwI	GGATC	5 cut(s)	12, 332, 555, 689, 702
AlwNI	CAGNNNCTG	2 cut(s)	244, 593
AoxI	GGCC	2 cut(s)	342, 602
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	156
AsuNHI	GCTAGC	1 cut(s)	155
AxyI	CCTNAGG	1 cut(s)	651
BamHI	GGATCC	2 cut(s)	4, 694
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	4 cut(s)	58, 110, 175, 664
Bbv12I	GWGCWC	2 cut(s)	58, 175
BbvCI	CCTCAGC	1 cut(s)	639
BccI	CCATC	4 cut(s)	34, 670, 685, 784
BciT130I	CCWGG	3 cut(s)	168, 394, 666
BcnI	CCSGG	1 cut(s)	117
BfaI	CTAG	1 cut(s)	156
BglI	GCCNNNNNGGC	1 cut(s)	745
BlpI	GCTNAGC	2 cut(s)	174, 711
Bme1390I	CCNGG	4 cut(s)	117, 168, 394, 666
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	7 cut(s)	6, 107, 378, 603, 663, 696, 756
BmrFI	CCNGG	4 cut(s)	117, 168, 394, 666
BmsI	GCATC	1 cut(s)	601
BmtI	GCTAGC	1 cut(s)	159
BpmI	CTGGAG	3 cut(s)	189, 455, 741
Bpu10I	CCTNAGC	1 cut(s)	639
Bpu1102I	GCTNAGC	2 cut(s)	174, 711
BpuMI	CCSGG	1 cut(s)	117
BsaJI	CCNNGG	7 cut(s)	116, 315, 372, 393, 539, 565, 578
Bsc4I	CCNNNNNNNGG	7 cut(s)	34, 115, 116, 316, 321, 544, 656
Bse1I	ACTGG	1 cut(s)	265
Bse21I	CCTNAGG	1 cut(s)	651
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	3 cut(s)	168, 394, 666
BseDI	CCNNGG	7 cut(s)	116, 315, 372, 393, 539, 565, 578
BseGI	GGATG	2 cut(s)	45, 358
BseLI	CCNNNNNNNGG	7 cut(s)	34, 115, 116, 316, 321, 544, 656
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	6 cut(s)	71, 188, 653, 665, 725, 749
BseNI	ACTGG	1 cut(s)	265
BshFI	GGCC	2 cut(s)	344, 604
BshNI	GGYRCC	1 cut(s)	376
BsiHKAI	GWGCWC	2 cut(s)	58, 175
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	7 cut(s)	34, 115, 116, 316, 321, 544, 656
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	2 cut(s)	344, 604
Bsp1286I	GDGCHC	4 cut(s)	58, 110, 175, 664
Bsp143I	GATC	5 cut(s)	4, 324, 547, 694, 781
Bsp1720I	GCTNAGC	2 cut(s)	174, 711
BspACI	CCGC	4 cut(s)	8, 129, 153, 460
BspANI	GGCC	2 cut(s)	344, 604
BspCNI	CTCAG	6 cut(s)	70, 187, 652, 664, 724, 748
BspLI	GGNNCC	7 cut(s)	6, 107, 378, 603, 663, 696, 756
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	5 cut(s)	12, 332, 555, 689, 702
BspT107I	GGYRCC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	7 cut(s)	116, 315, 372, 393, 539, 565, 578
BssMI	GATC	5 cut(s)	4, 324, 547, 694, 781
BssT1I	CCWWGG	3 cut(s)	315, 539, 565
Bst2UI	CCWGG	3 cut(s)	168, 394, 666
Bst4CI	ACNGT	3 cut(s)	71, 136, 589
Bst6I	CTCTTC	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstC8I	GCNNGC	6 cut(s)	157, 180, 195, 606, 645, 753
BstDEI	CTNAG	6 cut(s)	57, 174, 639, 651, 711, 735
BstENI	CCTNNNNNAGG	1 cut(s)	319
BstF5I	GGATG	2 cut(s)	45, 358
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	5 cut(s)	7, 327, 550, 697, 784
BstMBI	GATC	5 cut(s)	4, 324, 547, 694, 781
BstMWI	GCNNNNNNNGC	8 cut(s)	179, 184, 190, 223, 244, 640, 745, 772
BstNI	CCWGG	3 cut(s)	168, 394, 666
BstNSI	RCATGY	1 cut(s)	402
BstSCI	CCNGG	4 cut(s)	115, 166, 392, 664
BstX2I	RGATCY	3 cut(s)	4, 547, 694
BstXI	CCANNNNNNTGG	1 cut(s)	167
BstYI	RGATCY	3 cut(s)	4, 547, 694
Bsu36I	CCTNAGG	1 cut(s)	651
BsuRI	GGCC	2 cut(s)	344, 604
BtsCI	GGATG	2 cut(s)	45, 358
BtsIMutI	CAGTG	2 cut(s)	141, 288
Cac8I	GCNNGC	6 cut(s)	157, 180, 195, 606, 645, 753
CaiI	CAGNNNCTG	2 cut(s)	244, 593
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	585
CviAII	CATG	2 cut(s)	399, 730
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	6 cut(s)	57, 174, 639, 651, 711, 735
DpnI	GATC	5 cut(s)	6, 326, 549, 696, 783
DpnII	GATC	5 cut(s)	4, 324, 547, 694, 781
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Ecl136II	GAGCTC	2 cut(s)	56, 173
Eco130I	CCWWGG	3 cut(s)	315, 539, 565
Eco24I	GRGCYC	4 cut(s)	58, 110, 175, 664
Eco32I	GATATC	2 cut(s)	366, 511
Eco53kI	GAGCTC	2 cut(s)	56, 173
Eco57I	CTGAAG	1 cut(s)	218
Eco81I	CCTNAGG	1 cut(s)	651
EcoICRI	GAGCTC	2 cut(s)	56, 173
EcoNI	CCTNNNNNAGG	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	602
EcoRII	CCWGG	3 cut(s)	166, 392, 664
EcoRV	GATATC	2 cut(s)	366, 511
EcoT14I	CCWWGG	3 cut(s)	315, 539, 565
EcoT38I	GRGCYC	4 cut(s)	58, 110, 175, 664
ErhI	CCWWGG	3 cut(s)	315, 539, 565
FaeI	CATG	2 cut(s)	402, 733
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	2 cut(s)	398, 729
FblI	GTMKAC	1 cut(s)	528
FokI	GGATG	2 cut(s)	52, 365
FriOI	GRGCYC	4 cut(s)	58, 110, 175, 664
FspBI	CTAG	1 cut(s)	156
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	1 cut(s)	183
GsuI	CTGGAG	3 cut(s)	189, 455, 741
HaeIII	GGCC	2 cut(s)	344, 604
HapII	CCGG	1 cut(s)	116
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	2 cut(s)	402, 733
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	2 cut(s)	439, 733
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	2 cut(s)	63, 529
Hpy188I	TCNGA	3 cut(s)	552, 579, 781
Hpy188III	TCNNGA	5 cut(s)	272, 298, 328, 472, 758
Hpy8I	GTNNAC	2 cut(s)	63, 529
HpyAV	CCTTC	2 cut(s)	320, 334
HpyCH4III	ACNGT	3 cut(s)	71, 136, 589
HpyCH4V	TGCA	5 cut(s)	148, 247, 488, 494, 614
HpyF10VI	GCNNNNNNNGC	8 cut(s)	179, 184, 190, 223, 244, 640, 745, 772
HpyF3I	CTNAG	6 cut(s)	57, 174, 639, 651, 711, 735
Hsp92II	CATG	2 cut(s)	402, 733
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	5 cut(s)	4, 324, 547, 694, 781
LmnI	GCTCC	6 cut(s)	53, 105, 140, 170, 667, 760
LweI	GCATC	1 cut(s)	601
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	5 cut(s)	6, 326, 549, 696, 783
MboI	GATC	5 cut(s)	4, 324, 547, 694, 781
MboII	GAAGA	3 cut(s)	343, 461, 487
MflI	RGATCY	3 cut(s)	4, 547, 694
MhlI	GDGCHC	4 cut(s)	58, 110, 175, 664
MluCI	AATT	2 cut(s)	419, 573
MlyI	GAGTC	1 cut(s)	727
MnlI	CCTC	8 cut(s)	343, 367, 423, 456, 538, 573, 648, 660
MspA1I	CMGCKG	2 cut(s)	244, 491
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	4 cut(s)	117, 168, 394, 666
MvaI	CCWGG	3 cut(s)	168, 394, 666
MwoI	GCNNNNNNNGC	8 cut(s)	179, 184, 190, 223, 244, 640, 745, 772
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	5 cut(s)	4, 324, 547, 694, 781
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	2 cut(s)	402, 733
NlaIV	GGNNCC	7 cut(s)	6, 107, 378, 603, 663, 696, 756
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	286
NsbI	TGCGCA	1 cut(s)	183
NspI	RCATGY	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	439
PflFI	GACNNNGTC	2 cut(s)	284, 533
PflMI	CCANNNNNTGG	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	664
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
Psp124BI	GAGCTC	2 cut(s)	58, 175
Psp6I	CCWGG	3 cut(s)	166, 392, 664
PspGI	CCWGG	3 cut(s)	166, 392, 664
PspN4I	GGNNCC	7 cut(s)	6, 107, 378, 603, 663, 696, 756
PspPI	GGNCC	1 cut(s)	602
PstNI	CAGNNNCTG	2 cut(s)	244, 593
PsuI	RGATCY	3 cut(s)	4, 547, 694
PsyI	GACNNNGTC	2 cut(s)	284, 533
PvuII	CAGCTG	2 cut(s)	244, 491
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
SacI	GAGCTC	2 cut(s)	58, 175
Sau3AI	GATC	5 cut(s)	4, 324, 547, 694, 781
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	4 cut(s)	117, 168, 394, 666
SduI	GDGCHC	4 cut(s)	58, 110, 175, 664
SfaNI	GCATC	1 cut(s)	601
Sse9I	AATT	2 cut(s)	419, 573
SsiI	CCGC	4 cut(s)	8, 129, 153, 460
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	2 cut(s)	58, 175
StyD4I	CCNGG	4 cut(s)	115, 166, 392, 664
StyI	CCWWGG	3 cut(s)	315, 539, 565
TaaI	ACNGT	3 cut(s)	71, 136, 589
TaqI	TCGA	1 cut(s)	279
TasI	AATT	2 cut(s)	419, 573
TfiI	GAWTC	1 cut(s)	439
TscAI	CASTG	2 cut(s)	141, 295
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	3 cut(s)	353, 400, 573
TspGWI	ACGGA	2 cut(s)	461, 687
TspRI	CASTG	2 cut(s)	141, 295
Tth111I	GACNNNGTC	2 cut(s)	284, 533
Van91I	CCANNNNNTGG	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	319
XceI	RCATGY	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.