Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Reverse (-)

50518894 .. 50521753

Gene Structure 2860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG212100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGATCAGCAAGGGCATGGGCATCCAACAACAATGGGAGTCCCAGGTGCAGGTCAAGCATCATATGGTGTGAACCCATATCAGCCTAGCCAAATGATGGGACTCTCTCCAACTGGATCAGTTGGAATGATGCAATCTCCCACTCAGCCGGGAGGTCCTTCTGCCCCTTCTCAGCTTGCACAACACCAAGCTTATCAGCACATCCACCAGCAACAACAACAGCAGCTACAGCAACAACTCCAAAACTTTTGGTCAGGTCAGTATCAAGAAATTGAGCAGGCTAATGATTTCAAGAACCATAGTTTACCATTGGCCAGGATTAAGAAGATTATGAAGGCTGATGAGGATGTAAGGATGATATCTGCTGAAGCTCCGGTCATATTTGCCAGGGCCTGTGAGATGTTTATTCTGGAGTTGACGCTACGGTCTTGGAACCACACAGAGGAGAACAAAAGGAGAACATTGCAAAAGAATGACATTGCGGCAGCAATTACAAGGACTGATATATTTGATTTTCTAGTTGATATCGTCCCCAGAGAGGATTTGAAAGATGAGGTTCTGGCATCAATCCCAAGAGGTGGGAATGTTCCAGTTGTCGGTCCAGCTGATGGTCTTCCTTACTATTACATGCCTGCTCAACATCCACCACAGGTTGGTGCTCCTGGGATGATGGTGGGAAAGCCTGTGATGGATCAAAATATGTATGGCCAACCAACACATCCATACATGGCTCAGCCAGCTTGGCCTCAGCAACAACAGCCGCACAAAGATTCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

259

Amino Acids

28.86

Weight (kDa)

5.9

Isoelectric Point (pI)

65.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	93 - 164	4.2e-17	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	101 - 164	3.2e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	424
Acc36I	ACCTGC	1 cut(s)	41
AccB7I	CCANNNNNTGG	4 cut(s)	97, 578, 608, 653
AciI	CCGC	2 cut(s)	482, 761
AclWI	GGATC	3 cut(s)	12, 124, 699
AcoI	YGGCCR	2 cut(s)	312, 706
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	8 cut(s)	50, 97, 442, 538, 578, 596, 608, 653
AgsI	TTSAA	2 cut(s)	292, 547
AjnI	CCWGG	4 cut(s)	43, 314, 386, 661
AluBI	AGCT	6 cut(s)	175, 191, 226, 371, 605, 740
AluI	AGCT	6 cut(s)	175, 191, 226, 371, 605, 740
Alw21I	GWGCWC	1 cut(s)	661
AlwI	GGATC	3 cut(s)	12, 124, 699
AlwNI	CAGNNNCTG	1 cut(s)	393
AoxI	GGCC	4 cut(s)	312, 390, 706, 743
ApeKI	GCWGC	2 cut(s)	223, 485
AspS9I	GGNCC	3 cut(s)	155, 390, 599
AsuC2I	CCSGG	1 cut(s)	150
AvaII	GGWCC	2 cut(s)	155, 599
BalI	TGGCCA	2 cut(s)	314, 708
BbsI	GAAGAC	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	661
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	2 cut(s)	235, 497
BccI	CCATC	4 cut(s)	91, 602, 664, 682
BciT130I	CCWGG	4 cut(s)	45, 316, 388, 663
BcnI	CCSGG	1 cut(s)	150
BfaI	CTAG	2 cut(s)	87, 518
BfmI	CTRYAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	742
BisI	GCNGC	4 cut(s)	224, 483, 486, 761
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	4 cut(s)	225, 484, 487, 762
Bme1390I	CCNGG	5 cut(s)	45, 150, 316, 388, 663
Bme18I	GGWCC	2 cut(s)	155, 599
BmgT120I	GGNCC	3 cut(s)	155, 390, 599
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	5 cut(s)	45, 150, 316, 388, 663
BmsI	GCATC	4 cut(s)	31, 68, 120, 572
BpiI	GAAGAC	1 cut(s)	605
BpmI	CTGGAG	1 cut(s)	431
Bpu10I	CCTNAGC	1 cut(s)	747
Bpu1102I	GCTNAGC	1 cut(s)	732
BpuMI	CCSGG	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	43, 387, 662
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	8 cut(s)	50, 97, 442, 538, 578, 596, 608, 653
Bse1I	ACTGG	2 cut(s)	118, 590
Bse3DI	GCAATG	2 cut(s)	461, 477
BseBI	CCWGG	4 cut(s)	45, 316, 388, 663
BseDI	CCNNGG	3 cut(s)	43, 387, 662
BseGI	GGATG	7 cut(s)	22, 201, 352, 360, 640, 672, 718
BseLI	CCNNNNNNNGG	8 cut(s)	50, 97, 442, 538, 578, 596, 608, 653
BseMI	GCAATG	2 cut(s)	461, 477
BseMII	CTCAG	5 cut(s)	158, 185, 746, 761, 765
BseNI	ACTGG	2 cut(s)	118, 590
BseRI	GAGGAG	1 cut(s)	458
BseXI	GCAGC	2 cut(s)	235, 497
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	314, 392, 708, 745
BsiHKAI	GWGCWC	1 cut(s)	661
BsiSI	CCGG	2 cut(s)	149, 374
BslFI	GGGAC	3 cut(s)	26, 114, 515
BslI	CCNNNNNNNGG	8 cut(s)	50, 97, 442, 538, 578, 596, 608, 653
BsmFI	GGGAC	3 cut(s)	26, 114, 515
BsnI	GGCC	4 cut(s)	314, 392, 708, 745
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	3 cut(s)	4, 116, 691
Bsp1720I	GCTNAGC	1 cut(s)	732
BspACI	CCGC	2 cut(s)	482, 761
BspANI	GGCC	4 cut(s)	314, 392, 708, 745
BspCNI	CTCAG	5 cut(s)	157, 184, 745, 760, 766
BspLI	GGNNCC	1 cut(s)	434
BspMI	ACCTGC	1 cut(s)	41
BspPI	GGATC	3 cut(s)	12, 124, 699
BsrDI	GCAATG	2 cut(s)	461, 477
BsrI	ACTGG	2 cut(s)	118, 590
BssECI	CCNNGG	3 cut(s)	43, 387, 662
BssMI	GATC	3 cut(s)	4, 116, 691
Bst2UI	CCWGG	4 cut(s)	45, 316, 388, 663
Bst4CI	ACNGT	1 cut(s)	426
BstC8I	GCNNGC	4 cut(s)	177, 279, 633, 738
BstDEI	CTNAG	5 cut(s)	144, 171, 732, 747, 774
BstF5I	GGATG	7 cut(s)	22, 201, 352, 360, 640, 672, 718
BstKTI	GATC	3 cut(s)	7, 119, 694
BstMBI	GATC	3 cut(s)	4, 116, 691
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 229, 737, 742, 757
BstNI	CCWGG	4 cut(s)	45, 316, 388, 663
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	5 cut(s)	43, 148, 314, 386, 661
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	235, 497
BstV2I	GAAGAC	1 cut(s)	605
BsuRI	GGCC	4 cut(s)	314, 392, 708, 745
BtsCI	GGATG	7 cut(s)	22, 201, 352, 360, 640, 672, 718
BveI	ACCTGC	1 cut(s)	41
Cac8I	GCNNGC	4 cut(s)	177, 279, 633, 738
CaiI	CAGNNNCTG	1 cut(s)	393
Cfr13I	GGNCC	3 cut(s)	155, 390, 599
CseI	GACGC	1 cut(s)	427
CviAII	CATG	3 cut(s)	17, 628, 727
DdeI	CTNAG	5 cut(s)	144, 171, 732, 747, 774
DpnI	GATC	3 cut(s)	6, 118, 693
DpnII	GATC	3 cut(s)	4, 116, 691
DrdI	GACNNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	424
EaeI	YGGCCR	2 cut(s)	312, 706
Eco32I	GATATC	2 cut(s)	360, 526
Eco47I	GGWCC	2 cut(s)	155, 599
Eco57I	CTGAAG	1 cut(s)	387
EcoO109I	RGGNCCY	2 cut(s)	155, 390
EcoRII	CCWGG	4 cut(s)	43, 314, 386, 661
EcoRV	GATATC	2 cut(s)	360, 526
FaeI	CATG	3 cut(s)	20, 631, 730
FaqI	GGGAC	3 cut(s)	26, 114, 515
FatI	CATG	3 cut(s)	16, 627, 726
FauNDI	CATATG	1 cut(s)	64
Fnu4HI	GCNGC	4 cut(s)	224, 483, 486, 761
FokI	GGATG	7 cut(s)	9, 188, 359, 367, 627, 679, 705
Fsp4HI	GCNGC	4 cut(s)	224, 483, 486, 761
FspBI	CTAG	2 cut(s)	87, 518
GluI	GCNGC	4 cut(s)	224, 483, 486, 761
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	4 cut(s)	314, 392, 708, 745
HapII	CCGG	2 cut(s)	149, 374
HgaI	GACGC	1 cut(s)	427
Hin1II	CATG	3 cut(s)	20, 631, 730
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	3 cut(s)	39, 102, 770
HpaII	CCGG	2 cut(s)	149, 374
Hpy166II	GTNNAC	3 cut(s)	73, 305, 417
Hpy188I	TCNGA	1 cut(s)	775
Hpy188III	TCNNGA	3 cut(s)	266, 292, 410
Hpy8I	GTNNAC	3 cut(s)	73, 305, 417
HpyAV	CCTTC	3 cut(s)	168, 177, 328
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4V	TGCA	4 cut(s)	50, 133, 179, 466
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 229, 737, 742, 757
HpyF3I	CTNAG	5 cut(s)	144, 171, 732, 747, 774
Hsp92II	CATG	3 cut(s)	20, 631, 730
Kzo9I	GATC	3 cut(s)	4, 116, 691
LmnI	GCTCC	2 cut(s)	376, 664
Lsp1109I	GCAGC	2 cut(s)	235, 497
LweI	GCATC	4 cut(s)	31, 68, 120, 572
MaeI	CTAG	2 cut(s)	87, 518
MalI	GATC	3 cut(s)	6, 118, 693
MboI	GATC	3 cut(s)	4, 116, 691
MboII	GAAGA	2 cut(s)	337, 605
MhlI	GDGCHC	1 cut(s)	661
MlsI	TGGCCA	2 cut(s)	314, 708
MluCI	AATT	2 cut(s)	270, 489
MluNI	TGGCCA	2 cut(s)	314, 708
MlyI	GAGTC	2 cut(s)	48, 96
MmeI	TCCRAC	3 cut(s)	50, 103, 134
MnlI	CCTC	7 cut(s)	146, 337, 436, 532, 547, 569, 756
Mox20I	TGGCCA	2 cut(s)	314, 708
MscI	TGGCCA	2 cut(s)	314, 708
MseI	TTAA	1 cut(s)	321
Msp20I	TGGCCA	2 cut(s)	314, 708
MspA1I	CMGCKG	1 cut(s)	605
MspI	CCGG	2 cut(s)	149, 374
MspR9I	CCNGG	5 cut(s)	45, 150, 316, 388, 663
MvaI	CCWGG	4 cut(s)	45, 316, 388, 663
MwoI	GCNNNNNNNGC	5 cut(s)	56, 229, 737, 742, 757
NciI	CCSGG	1 cut(s)	150
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	3 cut(s)	4, 116, 691
NlaIII	CATG	3 cut(s)	20, 631, 730
NlaIV	GGNNCC	1 cut(s)	434
NspI	RCATGY	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	770
PflMI	CCANNNNNTGG	4 cut(s)	97, 578, 608, 653
PkrI	GCNGC	4 cut(s)	225, 484, 487, 762
PleI	GAGTC	2 cut(s)	47, 96
PpsI	GAGTC	2 cut(s)	47, 96
PpuMI	RGGWCCY	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	4 cut(s)	43, 314, 386, 661
PspGI	CCWGG	4 cut(s)	43, 314, 386, 661
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	3 cut(s)	155, 390, 599
PspPPI	RGGWCCY	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	393
PvuII	CAGCTG	1 cut(s)	605
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	4 cut(s)	224, 483, 486, 761
Sau3AI	GATC	3 cut(s)	4, 116, 691
Sau96I	GGNCC	3 cut(s)	155, 390, 599
SchI	GAGTC	2 cut(s)	48, 96
ScrFI	CCNGG	5 cut(s)	45, 150, 316, 388, 663
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	4 cut(s)	31, 68, 120, 572
SfcI	CTRYAG	1 cut(s)	227
SinI	GGWCC	2 cut(s)	155, 599
Sse9I	AATT	2 cut(s)	270, 489
SsiI	CCGC	2 cut(s)	482, 761
SspMI	CTAG	2 cut(s)	87, 518
StyD4I	CCNGG	5 cut(s)	43, 148, 314, 386, 661
TaaI	ACNGT	1 cut(s)	426
TaqII	GACCGA	1 cut(s)	587
TasI	AATT	2 cut(s)	270, 489
TauI	GCSGC	2 cut(s)	485, 763
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseI	GCWGC	2 cut(s)	223, 485
TspDTI	ATGAA	1 cut(s)	347
Van91I	CCANNNNNTGG	4 cut(s)	97, 578, 608, 653
VpaK11BI	GGWCC	2 cut(s)	155, 599
XceI	RCATGY	1 cut(s)	631
XspI	CTAG	2 cut(s)	87, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.