Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007543.1

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Reverse (-)

25198 .. 28128

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007543.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

atgagggcccttaaaatatatcacggcgtgtaccattcttgggtcggacttcaaacttgggataccaaagtgatagttttccataatcggatacgaaaagtcaaacgaaaagttatagctgggacgacgaaccaaaactggcgcttttttatagtggggagagtggacgtaaatactccccccactccgattcccccaacccagctccactcctttcctgtttcatacttcatcagatttcccaatttctcccaacccaatttaaaggctttacaggtggttgagcaaaacccagaacccgagaacaagcagaccgacaaaaggatggatcagcaagggcatgggcatccaacaacaatgggagtcccaggtgcaggtcaagcatcatatggtgtgaacccatatcagcctagccaaataatgggactctctccaactggatcagttggaatgatgcaatctcccactcagccgggaggtccttctgccccttctcagcttgcacaacaccaagcttatcagcacatccaccagcaacaacaacagcagctacagcaacaactccaaaacttttggtcaggtcagtatcaagaaattgagcaggctaatgatttcaagaaccatagtttaccattggccaggattaagaagattatgaaggctgatgaggatgtaaggatgatatctgctgaagctccggtcatatttgccagggcctgtgagatgtttattctggagttgacgctacggtcttggaaccacacagaggagaacaaaaggagaacattgcaaaagaatgacattgcggcagcaattacaaggactgatatatttgattttctagttgatatcgtccctagagaggatttgaaagatgaggttctggcatcaatcccaagaggtgggaatgttccagttgtcggtccagctgatggtcttccttactattacatgcctgctcaacatccaccacaggttggtgctcctgggatgatggtgggaaagcctgtgatggatcaaaatatgtatggccaaccaacacatccatacatggctcagccagcttggcctcagcaacaacagccgcacaaagattctgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

367

Amino Acids

41.54

Weight (kDa)

8.98

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	748
Acc36I	ACCTGC	1 cut(s)	365
AccB7I	CCANNNNNTGG	4 cut(s)	421, 902, 932, 977
AciI	CCGC	2 cut(s)	806, 1085
AclWI	GGATC	3 cut(s)	336, 448, 1023
AcoI	YGGCCR	2 cut(s)	636, 1030
AcuI	CTGAAG	1 cut(s)	711
AdeI	CACNNNGTG	1 cut(s)	28
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	53, 616, 871
AjnI	CCWGG	4 cut(s)	367, 638, 710, 985
AluBI	AGCT	8 cut(s)	119, 205, 499, 515, 550, 695, 929, 1064
AluI	AGCT	8 cut(s)	119, 205, 499, 515, 550, 695, 929, 1064
Alw21I	GWGCWC	1 cut(s)	985
AlwI	GGATC	3 cut(s)	336, 448, 1023
AlwNI	CAGNNNCTG	1 cut(s)	717
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	5 cut(s)	6, 636, 714, 1030, 1067
ApaI	GGGCCC	1 cut(s)	10
ApeKI	GCWGC	2 cut(s)	547, 809
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	5 cut(s)	6, 7, 479, 714, 923
AsuC2I	CCSGG	1 cut(s)	474
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	479, 923
BaeGI	GKGCMC	1 cut(s)	10
BaeI	ACNNNNGTAYC	2 cut(s)	54, 87
BalI	TGGCCA	2 cut(s)	638, 1032
BanII	GRGCYC	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	929
Bbv12I	GWGCWC	1 cut(s)	985
BbvCI	CCTCAGC	1 cut(s)	1071
BbvI	GCAGC	2 cut(s)	559, 821
BccI	CCATC	4 cut(s)	319, 926, 988, 1006
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	4 cut(s)	369, 640, 712, 987
BciVI	GTATCC	2 cut(s)	55, 84
BcnI	CCSGG	1 cut(s)	474
BfaI	CTAG	3 cut(s)	411, 842, 858
BfmI	CTRYAG	1 cut(s)	551
BfoI	RGCGCY	1 cut(s)	145
BfuAI	ACCTGC	1 cut(s)	365
BfuI	GTATCC	2 cut(s)	55, 84
BglI	GCCNNNNNGGC	1 cut(s)	1066
BisI	GCNGC	4 cut(s)	548, 807, 810, 1085
BlpI	GCTNAGC	1 cut(s)	1056
BlsI	GCNGC	4 cut(s)	549, 808, 811, 1086
Bme1390I	CCNGG	5 cut(s)	369, 474, 640, 712, 987
Bme18I	GGWCC	2 cut(s)	479, 923
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	5 cut(s)	6, 7, 479, 714, 923
BmiI	GGNNCC	2 cut(s)	8, 758
BmrFI	CCNGG	5 cut(s)	369, 474, 640, 712, 987
BmsI	GCATC	4 cut(s)	355, 392, 444, 896
BpiI	GAAGAC	1 cut(s)	929
BpmI	CTGGAG	1 cut(s)	755
Bpu10I	CCTNAGC	1 cut(s)	1071
Bpu1102I	GCTNAGC	1 cut(s)	1056
BpuMI	CCSGG	1 cut(s)	474
BsaJI	CCNNGG	3 cut(s)	367, 711, 986
BsaWI	WCCGGW	1 cut(s)	697
Bse1I	ACTGG	3 cut(s)	143, 442, 914
Bse3DI	GCAATG	2 cut(s)	785, 801
BseBI	CCWGG	4 cut(s)	369, 640, 712, 987
BseDI	CCNNGG	3 cut(s)	367, 711, 986
BseGI	GGATG	8 cut(s)	330, 346, 525, 676, 684, 964, 996, 1042
BseMI	GCAATG	2 cut(s)	785, 801
BseMII	CTCAG	5 cut(s)	482, 509, 1070, 1085, 1089
BseNI	ACTGG	3 cut(s)	143, 442, 914
BseRI	GAGGAG	1 cut(s)	782
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	559, 821
BseYI	CCCAGC	2 cut(s)	119, 201
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	5 cut(s)	8, 638, 716, 1032, 1069
BsiHKAI	GWGCWC	1 cut(s)	985
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	473, 698
BslFI	GGGAC	4 cut(s)	136, 350, 438, 839
BsmFI	GGGAC	4 cut(s)	136, 350, 438, 839
BsnI	GGCC	5 cut(s)	8, 638, 716, 1032, 1069
BsoBI	CYCGRG	1 cut(s)	299
Bsp120I	GGGCCC	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	10, 985
Bsp143I	GATC	3 cut(s)	328, 440, 1015
Bsp1720I	GCTNAGC	1 cut(s)	1056
BspACI	CCGC	2 cut(s)	806, 1085
BspANI	GGCC	5 cut(s)	8, 638, 716, 1032, 1069
BspCNI	CTCAG	5 cut(s)	481, 508, 1069, 1084, 1090
BspLI	GGNNCC	2 cut(s)	8, 758
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	3 cut(s)	336, 448, 1023
BsrDI	GCAATG	2 cut(s)	785, 801
BsrI	ACTGG	3 cut(s)	143, 442, 914
BssECI	CCNNGG	3 cut(s)	367, 711, 986
BssMI	GATC	3 cut(s)	328, 440, 1015
Bst2UI	CCWGG	4 cut(s)	369, 640, 712, 987
Bst4CI	ACNGT	1 cut(s)	750
BstC8I	GCNNGC	4 cut(s)	501, 603, 957, 1062
BstDEI	CTNAG	5 cut(s)	468, 495, 1056, 1071, 1098
BstF5I	GGATG	8 cut(s)	330, 346, 525, 676, 684, 964, 996, 1042
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	3 cut(s)	331, 443, 1018
BstMBI	GATC	3 cut(s)	328, 440, 1015
BstMWI	GCNNNNNNNGC	5 cut(s)	380, 553, 1061, 1066, 1081
BstNI	CCWGG	4 cut(s)	369, 640, 712, 987
BstNSI	RCATGY	1 cut(s)	955
BstSCI	CCNGG	5 cut(s)	367, 472, 638, 710, 985
BstSFI	CTRYAG	1 cut(s)	551
BstSLI	GKGCMC	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	559, 821
BstV2I	GAAGAC	1 cut(s)	929
BsuI	GTATCC	2 cut(s)	55, 84
BsuRI	GGCC	5 cut(s)	8, 638, 716, 1032, 1069
BtsCI	GGATG	8 cut(s)	330, 346, 525, 676, 684, 964, 996, 1042
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	4 cut(s)	501, 603, 957, 1062
CaiI	CAGNNNCTG	1 cut(s)	717
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	5 cut(s)	6, 7, 479, 714, 923
CseI	GACGC	1 cut(s)	751
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	3 cut(s)	341, 952, 1051
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	5 cut(s)	468, 495, 1056, 1071, 1098
DpnI	GATC	3 cut(s)	330, 442, 1017
DpnII	GATC	3 cut(s)	328, 440, 1015
DraI	TTTAAA	1 cut(s)	264
DraIII	CACNNNGTG	1 cut(s)	28
DrdI	GACNNNNNNGTC	1 cut(s)	748
DseDI	GACNNNNNNGTC	1 cut(s)	748
EaeI	YGGCCR	2 cut(s)	636, 1030
Eco24I	GRGCYC	1 cut(s)	10
Eco32I	GATATC	2 cut(s)	684, 850
Eco47I	GGWCC	2 cut(s)	479, 923
Eco57I	CTGAAG	1 cut(s)	711
Eco88I	CYCGRG	1 cut(s)	299
EcoO109I	RGGNCCY	4 cut(s)	6, 7, 479, 714
EcoRII	CCWGG	4 cut(s)	367, 638, 710, 985
EcoRV	GATATC	2 cut(s)	684, 850
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	3 cut(s)	344, 955, 1054
FaqI	GGGAC	4 cut(s)	136, 350, 438, 839
FatI	CATG	3 cut(s)	340, 951, 1050
FauNDI	CATATG	1 cut(s)	388
Fnu4HI	GCNGC	4 cut(s)	548, 807, 810, 1085
FokI	GGATG	8 cut(s)	333, 337, 512, 683, 691, 951, 1003, 1029
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	4 cut(s)	548, 807, 810, 1085
FspBI	CTAG	3 cut(s)	411, 842, 858
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	4 cut(s)	548, 807, 810, 1085
GsaI	CCCAGC	2 cut(s)	123, 205
GsuI	CTGGAG	1 cut(s)	755
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	5 cut(s)	8, 638, 716, 1032, 1069
HapII	CCGG	2 cut(s)	473, 698
HgaI	GACGC	1 cut(s)	751
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	344, 955, 1054
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	741
HindII	GTYRAC	1 cut(s)	741
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	4 cut(s)	190, 363, 426, 1094
HpaII	CCGG	2 cut(s)	473, 698
Hpy166II	GTNNAC	5 cut(s)	31, 166, 397, 629, 741
Hpy188I	TCNGA	5 cut(s)	47, 90, 189, 236, 1099
Hpy188III	TCNNGA	3 cut(s)	590, 616, 734
Hpy8I	GTNNAC	5 cut(s)	31, 166, 397, 629, 741
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	492, 501, 652
HpyCH4III	ACNGT	1 cut(s)	750
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	4 cut(s)	374, 457, 503, 790
HpyF10VI	GCNNNNNNNGC	5 cut(s)	380, 553, 1061, 1066, 1081
HpyF3I	CTNAG	5 cut(s)	468, 495, 1056, 1071, 1098
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	344, 955, 1054
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	328, 440, 1015
LmnI	GCTCC	3 cut(s)	210, 700, 988
Lsp1109I	GCAGC	2 cut(s)	559, 821
LweI	GCATC	4 cut(s)	355, 392, 444, 896
MaeI	CTAG	3 cut(s)	411, 842, 858
MaeII	ACGT	1 cut(s)	168
MalI	GATC	3 cut(s)	330, 442, 1017
MboI	GATC	3 cut(s)	328, 440, 1015
MboII	GAAGA	2 cut(s)	661, 929
MhlI	GDGCHC	2 cut(s)	10, 985
MlsI	TGGCCA	2 cut(s)	638, 1032
MluCI	AATT	4 cut(s)	244, 259, 594, 813
MluNI	TGGCCA	2 cut(s)	638, 1032
MlyI	GAGTC	2 cut(s)	372, 420
MmeI	TCCRAC	4 cut(s)	25, 374, 427, 458
MnlI	CCTC	7 cut(s)	470, 661, 760, 856, 871, 893, 1080
Mox20I	TGGCCA	2 cut(s)	638, 1032
MscI	TGGCCA	2 cut(s)	638, 1032
MseI	TTAA	3 cut(s)	12, 263, 645
Msp20I	TGGCCA	2 cut(s)	638, 1032
MspA1I	CMGCKG	1 cut(s)	929
MspI	CCGG	2 cut(s)	473, 698
MspR9I	CCNGG	5 cut(s)	369, 474, 640, 712, 987
MvaI	CCWGG	4 cut(s)	369, 640, 712, 987
MwoI	GCNNNNNNNGC	5 cut(s)	380, 553, 1061, 1066, 1081
NciI	CCSGG	1 cut(s)	474
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	3 cut(s)	328, 440, 1015
NlaIII	CATG	3 cut(s)	344, 955, 1054
NlaIV	GGNNCC	2 cut(s)	8, 758
NspI	RCATGY	1 cut(s)	955
PfeI	GAWTC	2 cut(s)	190, 1094
PflMI	CCANNNNNTGG	4 cut(s)	421, 902, 932, 977
PkrI	GCNGC	4 cut(s)	549, 808, 811, 1086
PleI	GAGTC	2 cut(s)	371, 420
PpsI	GAGTC	2 cut(s)	371, 420
PpuMI	RGGWCCY	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	479
Psp6I	CCWGG	4 cut(s)	367, 638, 710, 985
PspFI	CCCAGC	2 cut(s)	119, 201
PspGI	CCWGG	4 cut(s)	367, 638, 710, 985
PspN4I	GGNNCC	2 cut(s)	8, 758
PspOMI	GGGCCC	1 cut(s)	6
PspPI	GGNCC	5 cut(s)	6, 7, 479, 714, 923
PspPPI	RGGWCCY	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	717
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	3 cut(s)	12, 263, 645
SatI	GCNGC	4 cut(s)	548, 807, 810, 1085
Sau3AI	GATC	3 cut(s)	328, 440, 1015
Sau96I	GGNCC	5 cut(s)	6, 7, 479, 714, 923
SchI	GAGTC	2 cut(s)	372, 420
ScrFI	CCNGG	5 cut(s)	369, 474, 640, 712, 987
SduI	GDGCHC	2 cut(s)	10, 985
SfaNI	GCATC	4 cut(s)	355, 392, 444, 896
SfcI	CTRYAG	1 cut(s)	551
SinI	GGWCC	2 cut(s)	479, 923
Sse9I	AATT	4 cut(s)	244, 259, 594, 813
SsiI	CCGC	2 cut(s)	806, 1085
SspMI	CTAG	3 cut(s)	411, 842, 858
StyD4I	CCNGG	5 cut(s)	367, 472, 638, 710, 985
TaaI	ACNGT	1 cut(s)	750
TaiI	ACGT	1 cut(s)	171
TaqII	GACCGA	2 cut(s)	329, 911
TasI	AATT	4 cut(s)	244, 259, 594, 813
TauI	GCSGC	2 cut(s)	809, 1087
TfiI	GAWTC	2 cut(s)	190, 1094
Tru1I	TTAA	3 cut(s)	12, 263, 645
Tru9I	TTAA	3 cut(s)	12, 263, 645
TseI	GCWGC	2 cut(s)	547, 809
TspDTI	ATGAA	3 cut(s)	213, 220, 671
Van91I	CCANNNNNTGG	4 cut(s)	421, 902, 932, 977
VpaK11BI	GGWCC	2 cut(s)	479, 923
XceI	RCATGY	1 cut(s)	955
XspI	CTAG	3 cut(s)	411, 842, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.