AT1G09415

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003379
Physical Location & Seq
Reverse (-)
3037754 .. 3038408
655 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09415.1

Sequence Viewer

Length: 339 bp
ATGGACAGAGACAGAAAGAGGGTGAAAATGGAGAAGGAAGATGACGAAGAAGAAAAGATGGAGAAGTTGTACACAGTGCTTAAAAACGCAAGGGAAATGCGGAAATATGTCAACAGCTCCATGGAGAAGAAGAGACAGGAAGAAGAAGAAAGAGCAAGGGTTCGTAGATTCCCTTCGTTTCAGCCAGAAGATTTCATTTTCATGAATAAAGCAGAGGCCAACAACATTGAAAAAGCAGCTAATGAGAGCTCTTCAGCATCCAACGAGTATGATGGCTCTAAGGAAAAGCAAGAAGGATCTGAGACTAACGTTTGTTTAGACTTGAATCTTTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

112

Amino Acids

13.29

Weight (kDa)

5.13

Isoelectric Point (pI)

74.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 12 - 109 4.2e-23 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 100
AclI AACGTT 1 cut(s) 309
AclWI GGATC 1 cut(s) 304
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 2 cut(s) 230, 325
AluBI AGCT 3 cut(s) 117, 239, 249
AluI AGCT 3 cut(s) 117, 239, 249
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 3 cut(s) 3, 127, 296
AlwI GGATC 1 cut(s) 304
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 34
BanII GRGCYC 1 cut(s) 251
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 248
BccI CCATC 2 cut(s) 52, 266
BcoDI GTCTC 3 cut(s) 3, 127, 296
BfmI CTRYAG 1 cut(s) 335
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
BmsI GCATC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 257
BseMII CTCAG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 248
BshFI GGCC 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 251
BsmAI GTCTC 3 cut(s) 3, 127, 296
BsnI GGCC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 251
Bsp1407I TGTACA 1 cut(s) 69
Bsp143I GATC 1 cut(s) 296
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 1 cut(s) 100
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 292
BspHI TCATGA 1 cut(s) 201
BspPI GGATC 1 cut(s) 304
BspQI GCTCTTC 1 cut(s) 256
BsrGI TGTACA 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 1 cut(s) 296
BssT1I CCWWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 2 cut(s) 125, 256
BstAUI TGTACA 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 279, 300
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 1 cut(s) 299
BstMAI GTCTC 3 cut(s) 3, 127, 296
BstMBI GATC 1 cut(s) 296
BstSFI CTRYAG 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BsuRI GGCC 1 cut(s) 218
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 81
CciI TCATGA 1 cut(s) 201
Csp6I GTAC 1 cut(s) 70
CviAII CATG 2 cut(s) 121, 202
CviJI RGCY 6 cut(s) 117, 184, 218, 239, 249, 276
CviKI_1 RGCY 6 cut(s) 117, 184, 218, 239, 249, 276
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 279, 300
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
Eam1104I CTCTTC 2 cut(s) 125, 256
EarI CTCTTC 2 cut(s) 125, 256
Ecl136II GAGCTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 124, 205
FaiI YATR 4 cut(s) 108, 122, 203, 270
FatI CATG 2 cut(s) 120, 201
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 244
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 237
HaeIII GGCC 1 cut(s) 218
Hin1II CATG 2 cut(s) 124, 205
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 2 cut(s) 168, 325
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 72, 112
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 2 cut(s) 72, 112
HpyAV CCTTC 3 cut(s) 28, 183, 287
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 309
HpyF3I CTNAG 2 cut(s) 279, 300
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 2 cut(s) 124, 205
Kzo9I GATC 1 cut(s) 296
LguI GCTCTTC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 2 cut(s) 122, 198
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 1 cut(s) 266
MaeII ACGT 1 cut(s) 309
MalI GATC 1 cut(s) 298
MboI GATC 1 cut(s) 296
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 2 cut(s) 12, 208
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 200
NcoI CCATGG 1 cut(s) 120
NdeII GATC 1 cut(s) 296
NlaIII CATG 2 cut(s) 124, 205
PagI TCATGA 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 256
PfeI GAWTC 2 cut(s) 168, 325
PkrI GCNGC 1 cut(s) 238
Psp124BI GAGCTC 1 cut(s) 251
Psp1406I AACGTT 1 cut(s) 309
PsuI RGATCY 1 cut(s) 296
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 200
SacI GAGCTC 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 1 cut(s) 296
SduI GDGCHC 1 cut(s) 251
SetI ASST 4 cut(s) 119, 241, 251, 312
SfaNI GCATC 1 cut(s) 266
SfcI CTRYAG 1 cut(s) 335
SgeI CNNG 9 cut(s) 102, 133, 149, 168, 197, 214, 277, 302, 334
SmiMI CAYNNNNRTG 1 cut(s) 200
SsiI CCGC 1 cut(s) 100
SstI GAGCTC 1 cut(s) 251
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 312
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 2 cut(s) 168, 325
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 81
TseI GCWGC 1 cut(s) 236
TspDTI ATGAA 3 cut(s) 184, 190, 218
TspRI CASTG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.