pycom12g07190

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0003379
Physical Location & Seq
Reverse (-)
7464303 .. 7464707
405 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g07190.1

Sequence Viewer

Length: 405 bp
ATGTGTATGTGTGTGTATACATATCACAAACATACACTCACGCAGAGAAACAAGGAGTTAAGAGAGAGAAGCATGGAAGGAGGAAGCAAGAAGAGGAAGATGGAAATTGAAGAAGAGGATGAAGAGGAAAAGATTGAGAAATTCTTTGCGTTGATTAGAAGTATGAGGGAGGTGCGCGAGCTTCTTAGGGGCAACTCAAACGTCCCAAAGGAGAAGACAGATGAGAAGAAAAAGGAAGATGGCAAGGCTGCCGGGGGTTGGAACCCGAAATTTCAACCGGAGGACTTCCTTGAGGATGTTAAGAATTCTGGTCATCATGGAGCAGGCCCCTCTAAAACAGAAGAAAAAGAAGATAAGAAAGAAAATGGAGGAGGGAATGCTATAAACCTAAATCTTTCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

135

Amino Acids

15.44

Weight (kDa)

6.46

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 37 - 121 1.1e-20 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 17
AccII CGCG 1 cut(s) 177
AcsI RAATTY 3 cut(s) 140, 269, 304
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 2 cut(s) 110, 275
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
AoxI GGCC 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 3 cut(s) 140, 269, 304
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 235
BccI CCATC 2 cut(s) 94, 233
BcnI CCSGG 1 cut(s) 253
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 2 cut(s) 263, 328
BmrFI CCNGG 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 2 cut(s) 124, 301
BseLI CCNNNNNNNGG 1 cut(s) 258
BseRI GAGGAG 1 cut(s) 384
BseXI GCAGC 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 327
BsiSI CCGG 2 cut(s) 252, 278
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 1 cut(s) 327
BspANI GGCC 1 cut(s) 327
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 263, 328
BssECI CCNNGG 1 cut(s) 252
BssNAI GTATAC 1 cut(s) 18
Bst1107I GTATAC 1 cut(s) 18
Bst6I CTCTTC 3 cut(s) 86, 108, 117
BstC8I GCNNGC 2 cut(s) 179, 325
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 2 cut(s) 124, 301
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 251
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 221
BstZ17I GTATAC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 327
BtsCI GGATG 2 cut(s) 124, 301
Cac8I GCNNGC 2 cut(s) 179, 325
CfoI GCGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 326
CviAII CATG 2 cut(s) 73, 317
CviJI RGCY 3 cut(s) 181, 248, 327
CviKI_1 RGCY 3 cut(s) 181, 248, 327
DdeI CTNAG 1 cut(s) 185
Eam1104I CTCTTC 3 cut(s) 86, 108, 117
EarI CTCTTC 3 cut(s) 86, 108, 117
EcoO109I RGGNCCY 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 304
FaeI CATG 2 cut(s) 76, 320
FaiI YATR 8 cut(s) 8, 18, 22, 33, 74, 164, 318, 383
FaqI GGGAC 1 cut(s) 188
FatI CATG 2 cut(s) 72, 316
FblI GTMKAC 1 cut(s) 17
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 2 cut(s) 131, 308
Fsp4HI GCNGC 1 cut(s) 249
GlaI GCGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 249
HaeIII GGCC 1 cut(s) 327
HapII CCGG 2 cut(s) 252, 278
HhaI GCGC 1 cut(s) 177
Hin1II CATG 2 cut(s) 76, 320
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HpaII CCGG 2 cut(s) 252, 278
Hpy166II GTNNAC 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 2 cut(s) 76, 320
HspAI GCGC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 4 cut(s) 265, 291, 294, 309
Lsp1109I GCAGC 1 cut(s) 235
MaeII ACGT 1 cut(s) 201
MluCI AATT 4 cut(s) 105, 140, 269, 304
MmeI TCCRAC 1 cut(s) 239
MseI TTAA 2 cut(s) 59, 300
MspI CCGG 2 cut(s) 252, 278
MspR9I CCNGG 1 cut(s) 253
Mva1269I GAATGC 1 cut(s) 382
MvnI CGCG 1 cut(s) 177
NciI CCSGG 1 cut(s) 253
NlaIII CATG 2 cut(s) 76, 320
NlaIV GGNNCC 2 cut(s) 263, 328
PctI GAATGC 1 cut(s) 382
PkrI GCNGC 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 263, 328
PspPI GGNCC 1 cut(s) 326
SaqAI TTAA 2 cut(s) 59, 300
SatI GCNGC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 253
SetI ASST 4 cut(s) 174, 183, 204, 390
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 4 cut(s) 105, 140, 269, 304
StyD4I CCNGG 1 cut(s) 251
TaiI ACGT 1 cut(s) 204
TasI AATT 4 cut(s) 105, 140, 269, 304
Tru1I TTAA 2 cut(s) 59, 300
Tru9I TTAA 2 cut(s) 59, 300
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 135
XapI RAATTY 3 cut(s) 140, 269, 304
XmiI GTMKAC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.