Rh3AG277200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003379
Physical Location & Seq
Reverse (-)
32031411 .. 32035745
4335 bp
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UTR
Exon/CDS
Intron
Rh3AG277200.1

Sequence Viewer

Length: 426 bp
ATGGAGATCAATGAGAGCAAGAAGAAGAGGAAGGTTAGTGATGGCGATGATGAGCAACAGAACAATGAAGAAGCGGAAATGCAGATCTTCTTTGCTCTCATCAACAACATTCGCGAAGCTCGTCTGCGGTTGATGAATGGCTCGAATGTGGTATTGAATGCGGCCGGGATGGATCAAAATGACGACAACAGAACAAGCAGCAAGAAGAAGAAGAAGTTGATAGAGGAAGAGGAAGAGAAAGAGAAAGAGAAGGAAAGGTCCAAACAGATGTTCAATAGTGCTGCAGTGAGGAAGCCATCATTAGTATTTCAGCGTCAAGATTTACGGGAAGAGGCTCAGTTTAAAATCCCTACTTCTCAAATTAGTAGTGGAGGTGAGAAAGGAAAGATTACAGATTGTAACTTAGATCTTACTCTTTCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.18

Weight (kDa)

5.74

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 20 - 121 4e-07 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 74, 127, 161
AclWI GGATC 1 cut(s) 180
AcoI YGGCCR 1 cut(s) 162
AgsI TTSAA 2 cut(s) 157, 274
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
AlwI GGATC 1 cut(s) 180
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 198, 281
AspS9I GGNCC 1 cut(s) 258
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 210, 268
BccI CCATC 3 cut(s) 35, 163, 304
BcnI CCSGG 1 cut(s) 166
BfmI CTRYAG 1 cut(s) 282
BglII AGATCT 2 cut(s) 84, 406
BisI GCNGC 3 cut(s) 162, 199, 282
BlsI GCNGC 3 cut(s) 163, 200, 283
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 166
BpuMI CCSGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 350
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 210, 268
Bsh1236I CGCG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 165
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 4 cut(s) 6, 84, 172, 406
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 3 cut(s) 74, 127, 161
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 180
BssMI GATC 4 cut(s) 6, 84, 172, 406
Bst6I CTCTTC 4 cut(s) 20, 222, 228, 324
BstDEI CTNAG 2 cut(s) 336, 403
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 4 cut(s) 9, 87, 175, 409
BstMBI GATC 4 cut(s) 6, 84, 172, 406
BstMCI CGRYCG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 282
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 210, 268
BstX2I RGATCY 2 cut(s) 84, 406
BstYI RGATCY 2 cut(s) 84, 406
BstZI CGGCCG 1 cut(s) 162
BsuRI GGCC 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 291
BtuMI TCGCGA 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 258
CseI GACGC 1 cut(s) 302
CviJI RGCY 5 cut(s) 119, 141, 164, 295, 335
CviKI_1 RGCY 5 cut(s) 119, 141, 164, 295, 335
DdeI CTNAG 2 cut(s) 336, 403
DpnI GATC 4 cut(s) 8, 86, 174, 408
DpnII GATC 4 cut(s) 6, 84, 172, 406
DraI TTTAAA 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 162
EagI CGGCCG 1 cut(s) 162
Eam1104I CTCTTC 4 cut(s) 20, 222, 228, 324
EarI CTCTTC 4 cut(s) 20, 222, 228, 324
EclXI CGGCCG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 258
Eco52I CGGCCG 1 cut(s) 162
FaiI YATR 1 cut(s) 424
Fnu4HI GCNGC 3 cut(s) 162, 199, 282
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 3 cut(s) 162, 199, 282
GluI GCNGC 3 cut(s) 162, 199, 282
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 302
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 386
Hpy188III TCNNGA 2 cut(s) 113, 317
HpyAV CCTTC 2 cut(s) 25, 244
HpyCH4V TGCA 2 cut(s) 82, 284
HpyF3I CTNAG 2 cut(s) 336, 403
Kzo9I GATC 4 cut(s) 6, 84, 172, 406
LpnPI CCDG 1 cut(s) 178
Lsp1109I GCAGC 2 cut(s) 210, 268
MaeIII GTNAC 1 cut(s) 398
MalI GATC 4 cut(s) 8, 86, 174, 408
MboI GATC 4 cut(s) 6, 84, 172, 406
MflI RGATCY 2 cut(s) 84, 406
MluCI AATT 1 cut(s) 360
MnlI CCTC 6 cut(s) 21, 217, 223, 282, 325, 365
MseI TTAA 1 cut(s) 342
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 166
Mva1269I GAATGC 1 cut(s) 163
MvnI CGCG 1 cut(s) 114
NciI CCSGG 1 cut(s) 166
NdeII GATC 4 cut(s) 6, 84, 172, 406
NruI TCGCGA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PctI GAATGC 1 cut(s) 163
PkrI GCNGC 3 cut(s) 163, 200, 283
PspPI GGNCC 1 cut(s) 258
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 2 cut(s) 84, 406
RruI TCGCGA 1 cut(s) 114
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 3 cut(s) 162, 199, 282
Sau3AI GATC 4 cut(s) 6, 84, 172, 406
Sau96I GGNCC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 166
SetI ASST 4 cut(s) 36, 121, 260, 376
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 258
Sse9I AATT 1 cut(s) 360
SsiI CCGC 3 cut(s) 74, 127, 161
StyD4I CCNGG 1 cut(s) 164
TaqI TCGA 1 cut(s) 143
TasI AATT 1 cut(s) 360
TauI GCSGC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 291
TseI GCWGC 2 cut(s) 198, 281
TspDTI ATGAA 2 cut(s) 81, 149
TspRI CASTG 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.