FvH4_1g26630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003379
Physical Location & Seq
Reverse (-)
18463178 .. 18463606
429 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26630.t1

Sequence Viewer

Length: 429 bp
ATGGAGATCAATAAGAGCAAGAAGAAGAGGAAGAGCAGTGCTGGCAATGATGAGCTAGAGAAGACTGAAGAAGCGGAAATGCAGATCTTCTTTGCTCTCGTTGACAACATTCGCGAAGCTCGTCTGCGGTTGATGAATGGCTCAAATGTTGTGTTGAATGCGGCTGGGATAGATCAAACTGATGATTACAGATCAAACAAGAAGAAGAAGAAGAAGAAGTTGATAGAGGAAGAGGAACAGAATCAAGAGAAGGAGAGGTCCAAACAGATGTTCAGGCATGCTGCAGTTTGGAACCCATCATTGGTATTTCAGCATCAAGATTTACGGGAAGAGTCTCAGTTTAAAATCCCTACTTCTCAAATTAGTAGAGAAGGTGATGATGAAGGAAAAAGTAAAGATTGTAATCCAGATCTTACCCTTTCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.49

Weight (kDa)

6.76

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 21 - 131 2.8e-08 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 74, 127, 161
AcuI CTGAAG 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 1 cut(s) 157
AjuI GAANNNNNNNTTGG 4 cut(s) 254, 284, 286, 316
AluBI AGCT 2 cut(s) 55, 119
AluI AGCT 2 cut(s) 55, 119
Alw26I GTCTC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 282
BglII AGATCT 2 cut(s) 84, 409
BisI GCNGC 2 cut(s) 162, 282
BlsI GCNGC 2 cut(s) 163, 283
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 293
BmsI GCATC 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 402
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 52
Bse8I GATNNNNATC 1 cut(s) 402
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 268
BseYI CCCAGC 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 163
Bsp143I GATC 5 cut(s) 6, 84, 172, 191, 409
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 3 cut(s) 74, 127, 161
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 293
BspMAI CTGCAG 1 cut(s) 286
BspQI GCTCTTC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 52
BssMI GATC 5 cut(s) 6, 84, 172, 191, 409
Bst6I CTCTTC 4 cut(s) 20, 26, 225, 324
BstC8I GCNNGC 2 cut(s) 43, 279
BstDEI CTNAG 1 cut(s) 336
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 5 cut(s) 9, 87, 175, 194, 412
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 5 cut(s) 6, 84, 172, 191, 409
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 282
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 268
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 2 cut(s) 84, 409
BstYI RGATCY 2 cut(s) 84, 409
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 43
BtuMI TCGCGA 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 43, 279
Cfr13I GGNCC 1 cut(s) 258
CviAII CATG 1 cut(s) 278
CviJI RGCY 4 cut(s) 55, 119, 141, 164
CviKI_1 RGCY 4 cut(s) 55, 119, 141, 164
DdeI CTNAG 1 cut(s) 336
DpnI GATC 5 cut(s) 8, 86, 174, 193, 411
DpnII GATC 5 cut(s) 6, 84, 172, 191, 409
DraI TTTAAA 1 cut(s) 343
Eam1104I CTCTTC 4 cut(s) 20, 26, 225, 324
EarI CTCTTC 4 cut(s) 20, 26, 225, 324
Eco47I GGWCC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 87
FaeI CATG 1 cut(s) 281
FaiI YATR 1 cut(s) 279
FatI CATG 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 162, 282
Fsp4HI GCNGC 2 cut(s) 162, 282
FspBI CTAG 1 cut(s) 56
GluI GCNGC 2 cut(s) 162, 282
GsaI CCCAGC 1 cut(s) 168
Hin1II CATG 1 cut(s) 281
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 2 cut(s) 241, 332
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 103
Hpy188III TCNNGA 4 cut(s) 113, 245, 317, 407
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 3 cut(s) 244, 365, 377
HpyCH4V TGCA 2 cut(s) 82, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 336
Hsp92II CATG 1 cut(s) 281
Kzo9I GATC 5 cut(s) 6, 84, 172, 191, 409
LguI GCTCTTC 1 cut(s) 26
LpnPI CCDG 4 cut(s) 27, 150, 259, 420
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 56
MalI GATC 5 cut(s) 8, 86, 174, 193, 411
MboI GATC 5 cut(s) 6, 84, 172, 191, 409
MflI RGATCY 2 cut(s) 84, 409
MluCI AATT 1 cut(s) 360
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 4 cut(s) 21, 220, 226, 249
MseI TTAA 2 cut(s) 342, 427
Mva1269I GAATGC 1 cut(s) 163
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 42
NdeII GATC 5 cut(s) 6, 84, 172, 191, 409
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 1 cut(s) 293
NruI TCGCGA 1 cut(s) 114
NspI RCATGY 1 cut(s) 281
PaeI GCATGC 1 cut(s) 281
PciSI GCTCTTC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 2 cut(s) 163, 283
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PspFI CCCAGC 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 293
PspPI GGNCC 1 cut(s) 258
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 2 cut(s) 84, 409
RruI TCGCGA 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 342, 427
SatI GCNGC 2 cut(s) 162, 282
Sau3AI GATC 5 cut(s) 6, 84, 172, 191, 409
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 1 cut(s) 341
SetI ASST 4 cut(s) 57, 121, 260, 376
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 258
SphI GCATGC 1 cut(s) 281
Sse9I AATT 1 cut(s) 360
SsiI CCGC 3 cut(s) 74, 127, 161
SspMI CTAG 1 cut(s) 56
TasI AATT 1 cut(s) 360
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 2 cut(s) 342, 427
Tru9I TTAA 2 cut(s) 342, 427
TscAI CASTG 1 cut(s) 43
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 149, 396
TspRI CASTG 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 258
XceI RCATGY 1 cut(s) 281
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.