FvH4_6g08100

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003379
Physical Location & Seq
Reverse (-)
4818697 .. 4819044
348 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08100.t1

Sequence Viewer

Length: 348 bp
ATGGAAGGAGGAGAAAGGAAGAAGAGGAAGATGGAATTCGAAGAAGAGGATGAAGAGGAAAAGATTGAGAAGTTCTTTGCTCTGATTAAGAGTACAAGGCAGGTGTGTGAGATGCTCAAGGGCAGTTCAAACTGGCCATTGAAGAAGAAAGATGAGAGTTATAAGAAGGAAGATGATCCAGTGAAGAGAACTACTTGGAACCCGGCATTTCAACCAGAAGACTTCCTTGATCAAGATGATAAAGCCACAAGTGCTGGTCATAGTGCATGTCCTTCGAAAATTCAAGAAGAAGACGAAAAGGAAGAAGATGAAGGAGGTAATGGTCTAGACCTGAAGCTTTCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

116

Amino Acids

13.32

Weight (kDa)

4.72

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 14 - 110 1.9e-18 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AarI CACCTGC 1 cut(s) 91
Acc36I ACCTGC 1 cut(s) 91
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 134
AcsI RAATTY 2 cut(s) 35, 279
AfaI GTAC 1 cut(s) 94
AgsI TTSAA 4 cut(s) 129, 142, 212, 284
AluBI AGCT 1 cut(s) 337
AluI AGCT 1 cut(s) 337
AlwI GGATC 1 cut(s) 170
AoxI GGCC 1 cut(s) 134
ApoI RAATTY 2 cut(s) 35, 279
AsuC2I CCSGG 1 cut(s) 203
AsuII TTCGAA 2 cut(s) 39, 275
BalI TGGCCA 1 cut(s) 136
BbsI GAAGAC 2 cut(s) 225, 297
BccI CCATC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 1 cut(s) 203
BfaI CTAG 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 102
BpiI GAAGAC 2 cut(s) 225, 297
Bpu14I TTCGAA 2 cut(s) 39, 275
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 137, 179
BseGI GGATG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 137, 179
BseRI GAGGAG 1 cut(s) 24
BshFI GGCC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 203
BsnI GGCC 1 cut(s) 136
Bsp119I TTCGAA 2 cut(s) 39, 275
Bsp143I GATC 2 cut(s) 175, 229
BspANI GGCC 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 200
BspMI ACCTGC 1 cut(s) 91
BspPI GGATC 1 cut(s) 170
BspT104I TTCGAA 2 cut(s) 39, 275
BsrI ACTGG 2 cut(s) 137, 179
BssMI GATC 2 cut(s) 175, 229
Bst6I CTCTTC 4 cut(s) 17, 39, 48, 179
BstBI TTCGAA 2 cut(s) 39, 275
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 2 cut(s) 178, 232
BstMBI GATC 2 cut(s) 175, 229
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 201
BstV2I GAAGAC 2 cut(s) 225, 297
BsuRI GGCC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 93
CviAII CATG 1 cut(s) 267
CviJI RGCY 3 cut(s) 136, 245, 337
CviKI_1 RGCY 3 cut(s) 136, 245, 337
CviQI GTAC 1 cut(s) 93
DpnI GATC 2 cut(s) 177, 231
DpnII GATC 2 cut(s) 175, 229
EaeI YGGCCR 1 cut(s) 134
Eam1104I CTCTTC 4 cut(s) 17, 39, 48, 179
EarI CTCTTC 4 cut(s) 17, 39, 48, 179
EcoRI GAATTC 1 cut(s) 35
FaeI CATG 1 cut(s) 270
FaiI YATR 3 cut(s) 162, 261, 268
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 1 cut(s) 266
FbaI TGATCA 1 cut(s) 229
FokI GGATG 1 cut(s) 62
FspBI CTAG 1 cut(s) 326
HaeIII GGCC 1 cut(s) 136
HapII CCGG 1 cut(s) 203
Hin1II CATG 1 cut(s) 270
HindIII AAGCTT 1 cut(s) 335
HpaII CCGG 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 3 cut(s) 233, 284, 326
HpyAV CCTTC 3 cut(s) 160, 282, 305
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
Hsp92II CATG 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 2 cut(s) 175, 229
LpnPI CCDG 7 cut(s) 86, 118, 192, 216, 228, 240, 344
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 326
MalI GATC 2 cut(s) 177, 231
MboI GATC 2 cut(s) 175, 229
MlsI TGGCCA 1 cut(s) 136
MluCI AATT 2 cut(s) 35, 279
MluNI TGGCCA 1 cut(s) 136
MnlI CCTC 4 cut(s) 18, 40, 49, 308
Mox20I TGGCCA 1 cut(s) 136
MscI TGGCCA 1 cut(s) 136
MseI TTAA 1 cut(s) 87
Msp20I TGGCCA 1 cut(s) 136
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 203
NdeII GATC 2 cut(s) 175, 229
NlaIII CATG 1 cut(s) 270
NlaIV GGNNCC 1 cut(s) 200
NspI RCATGY 1 cut(s) 270
NspV TTCGAA 2 cut(s) 39, 275
PaqCI CACCTGC 1 cut(s) 91
PsiI TTATAA 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 200
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 2 cut(s) 175, 229
ScrFI CCNGG 1 cut(s) 203
SetI ASST 4 cut(s) 105, 319, 333, 339
SfaNI GCATC 1 cut(s) 102
SfuI TTCGAA 2 cut(s) 39, 275
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 35, 279
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 201
TaqI TCGA 2 cut(s) 39, 275
TasI AATT 2 cut(s) 35, 279
TatI WGTACW 1 cut(s) 92
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 186
TspDTI ATGAA 2 cut(s) 66, 324
TspRI CASTG 1 cut(s) 186
XapI RAATTY 2 cut(s) 35, 279
XbaI TCTAGA 1 cut(s) 325
XceI RCATGY 1 cut(s) 270
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.