Rw0G012350

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00549
OG0003379
Physical Location & Seq
Reverse (-)
165594 .. 166274
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G012350.1

Sequence Viewer

Length: 348 bp
ATGGAAGGAGACAGAAAGAAGAGGAAGATGAATTACGAAGAAGAGGATGAAGAGGAAAAGATTGAGAAGTTCTTTGCTCTGATTAAGAGTACAAGGCAGGTGTGTGAGATGCTCAGGGGCAGCTCGAGCTGGCCATTGGAGAAGAAATATCAGAATAAGAAGGAAGAGGATCGAGAGAAGAGAATCGGCGGTGCTTGGAACCCGGCATTTCAACCAGAAGACTTCCTTGATCAAGATGATAAAGCCACTAGTGATGGTCATGGTGTAGGTCCTTCAAAGAATCAAGAAGAAGACAAAAAGGAAGAAGATAAAGGTGGTGATGGTTTAGACCTGAAGCTTTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

115

Amino Acids

13.36

Weight (kDa)

4.91

Isoelectric Point (pI)

59.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 13 - 104 3.5e-20 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 88
Acc36I ACCTGC 1 cut(s) 88
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 177
AcoI YGGCCR 1 cut(s) 131
AfaI GTAC 1 cut(s) 91
AgsI TTSAA 2 cut(s) 212, 276
AhlI ACTAGT 1 cut(s) 248
AluBI AGCT 3 cut(s) 123, 129, 337
AluI AGCT 3 cut(s) 123, 129, 337
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 124
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 124
AvaII GGWCC 1 cut(s) 269
BalI TGGCCA 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 17, 49
BbsI GAAGAC 2 cut(s) 225, 297
BbvI GCAGC 1 cut(s) 132
BccI CCATC 2 cut(s) 248, 314
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 3
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 344
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 2 cut(s) 225, 297
Bpu10I CCTNAGC 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 132
BshFI GGCC 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 3
BsnI GGCC 1 cut(s) 133
BsoBI CYCGRG 1 cut(s) 124
Bsp143I GATC 2 cut(s) 169, 229
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 200
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 1 cut(s) 177
BssMI GATC 2 cut(s) 169, 229
Bst6I CTCTTC 5 cut(s) 14, 36, 45, 159, 173
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 2 cut(s) 172, 232
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 2 cut(s) 169, 229
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 2 cut(s) 225, 297
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 52
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 260
CviJI RGCY 5 cut(s) 123, 129, 133, 245, 337
CviKI_1 RGCY 5 cut(s) 123, 129, 133, 245, 337
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 113
DpnI GATC 2 cut(s) 171, 231
DpnII GATC 2 cut(s) 169, 229
EaeI YGGCCR 1 cut(s) 131
Eam1104I CTCTTC 5 cut(s) 14, 36, 45, 159, 173
EarI CTCTTC 5 cut(s) 14, 36, 45, 159, 173
Eco47I GGWCC 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 269
FaeI CATG 1 cut(s) 263
FaiI YATR 1 cut(s) 261
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 1 cut(s) 259
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 1 cut(s) 249
GluI GCNGC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 133
HapII CCGG 1 cut(s) 203
Hin1II CATG 1 cut(s) 263
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 2 cut(s) 183, 280
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 81, 153
Hpy188III TCNNGA 3 cut(s) 173, 233, 284
HpyAV CCTTC 2 cut(s) 154, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 1 cut(s) 263
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 2 cut(s) 169, 229
LpnPI CCDG 6 cut(s) 83, 100, 115, 216, 228, 344
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 249
MalI GATC 2 cut(s) 171, 231
MboI GATC 2 cut(s) 169, 229
MlsI TGGCCA 1 cut(s) 133
MluCI AATT 1 cut(s) 31
MluNI TGGCCA 1 cut(s) 133
MnlI CCTC 4 cut(s) 15, 37, 46, 160
Mox20I TGGCCA 1 cut(s) 133
MscI TGGCCA 1 cut(s) 133
MseI TTAA 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 133
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 126
NciI CCSGG 1 cut(s) 203
NdeII GATC 2 cut(s) 169, 229
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 200
PaeR7I CTCGAG 1 cut(s) 124
PaqCI CACCTGC 1 cut(s) 88
PfeI GAWTC 2 cut(s) 183, 280
PkrI GCNGC 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 1 cut(s) 269
PspPPI RGGWCCY 1 cut(s) 269
PspXI VCTCGAGB 1 cut(s) 124
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 169, 229
Sau96I GGNCC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 203
SetI ASST 7 cut(s) 102, 125, 131, 271, 316, 333, 339
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 344
Sfr274I CTCGAG 1 cut(s) 124
SinI GGWCC 1 cut(s) 269
SlaI CTCGAG 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 1 cut(s) 31
SsiI CCGC 1 cut(s) 189
SspMI CTAG 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 201
TaqI TCGA 2 cut(s) 125, 172
TasI AATT 1 cut(s) 31
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 2 cut(s) 183, 280
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseI GCWGC 1 cut(s) 120
TspDTI ATGAA 2 cut(s) 44, 63
VpaK11BI GGWCC 1 cut(s) 269
XhoI CTCGAG 1 cut(s) 124
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.