Rroxscaffold_6G00395570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003379
Physical Location & Seq
Forward (+)
16681596 .. 16682015
420 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00395570.1

Sequence Viewer

Length: 420 bp
ATGGAGATCAATGAGACCAAGAAGAAGAGGAAGGTTAGTGATGGCGATGATGAGCAACAGAACAATGAAGAAGCGGAAATGAAGATCTTCTTTGCTCTCATCAACAACATTCGCGAAGCTCGTCTGCGGTTGATGAATGGCTCAAATGTGGTATTGAATGCGGCTGGGATGGATCAAAATGACGACAACAGAACAAGCAGCAAGAAGAAGAAGAAATTGAGAGAGGAAGAGAAAGAGAAAGAGGAGGAGAGATCCAAACAGATGTTCAATAGTGCTGCAGTGAGGAAGCCATCATTAGTATTTCAGCGTCAAGATTTACGGGGAGAGGCTCAGTTTAAAATCCCTACTTCTCAAATTAGTAGAGGAGATGAGAAAGGAAAGATTACAGATTGTAACTTAGATCTTACTCTTTCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.03

Weight (kDa)

8.64

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 20 - 119 4.9e-07 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 74, 127, 161
AclWI GGATC 2 cut(s) 180, 246
AgsI TTSAA 2 cut(s) 157, 268
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 2 cut(s) 180, 246
ApeKI GCWGC 2 cut(s) 198, 275
Asp700I GAANNNNTTC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 210, 262
BccI CCATC 3 cut(s) 35, 163, 298
BcoDI GTCTC 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 276
BglII AGATCT 2 cut(s) 84, 400
BisI GCNGC 3 cut(s) 162, 199, 276
BlsI GCNGC 3 cut(s) 163, 200, 277
BsaI GGTCTC 1 cut(s) 8
BseGI GGATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 344
BseRI GAGGAG 3 cut(s) 257, 260, 378
BseXI GCAGC 2 cut(s) 210, 262
BseYI CCCAGC 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 8
BsmI GAATGC 1 cut(s) 163
Bso31I GGTCTC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 6, 84, 172, 251, 400
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 3 cut(s) 74, 127, 161
BspCNI CTCAG 1 cut(s) 343
BspFNI CGCG 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 2 cut(s) 180, 246
BspTNI GGTCTC 1 cut(s) 8
BssMI GATC 5 cut(s) 6, 84, 172, 251, 400
Bst6I CTCTTC 2 cut(s) 20, 222
BstDEI CTNAG 2 cut(s) 330, 397
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 5 cut(s) 9, 87, 175, 254, 403
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 5 cut(s) 6, 84, 172, 251, 400
BstSFI CTRYAG 1 cut(s) 276
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 210, 262
BstX2I RGATCY 3 cut(s) 84, 251, 400
BstYI RGATCY 3 cut(s) 84, 251, 400
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
BtuMI TCGCGA 1 cut(s) 114
CseI GACGC 1 cut(s) 296
CviJI RGCY 5 cut(s) 119, 141, 164, 289, 329
CviKI_1 RGCY 5 cut(s) 119, 141, 164, 289, 329
DdeI CTNAG 2 cut(s) 330, 397
DpnI GATC 5 cut(s) 8, 86, 174, 253, 402
DpnII GATC 5 cut(s) 6, 84, 172, 251, 400
DraI TTTAAA 1 cut(s) 337
Eam1104I CTCTTC 2 cut(s) 20, 222
EarI CTCTTC 2 cut(s) 20, 222
Eco31I GGTCTC 1 cut(s) 8
FalI AAGNNNNNCTT 2 cut(s) 74, 106
Fnu4HI GCNGC 3 cut(s) 162, 199, 276
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 3 cut(s) 162, 199, 276
GluI GCNGC 3 cut(s) 162, 199, 276
GsaI CCCAGC 1 cut(s) 168
HgaI GACGC 1 cut(s) 296
Hpy188III TCNNGA 2 cut(s) 113, 311
HpyAV CCTTC 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 278
HpyF3I CTNAG 2 cut(s) 330, 397
Kzo9I GATC 5 cut(s) 6, 84, 172, 251, 400
LpnPI CCDG 1 cut(s) 150
Lsp1109I GCAGC 2 cut(s) 210, 262
MaeIII GTNAC 1 cut(s) 392
MalI GATC 5 cut(s) 8, 86, 174, 253, 402
MboI GATC 5 cut(s) 6, 84, 172, 251, 400
MboII GAAGA 9 cut(s) 34, 37, 79, 80, 94, 217, 220, 223, 239
MflI RGATCY 3 cut(s) 84, 251, 400
MluCI AATT 2 cut(s) 215, 354
MnlI CCTC 7 cut(s) 21, 217, 235, 238, 276, 319, 356
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 163
MvnI CGCG 1 cut(s) 114
NdeII GATC 5 cut(s) 6, 84, 172, 251, 400
NruI TCGCGA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PctI GAATGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 86
PkrI GCNGC 3 cut(s) 163, 200, 277
PspFI CCCAGC 1 cut(s) 164
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 3 cut(s) 84, 251, 400
RruI TCGCGA 1 cut(s) 114
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 3 cut(s) 162, 199, 276
Sau3AI GATC 5 cut(s) 6, 84, 172, 251, 400
SetI ASST 2 cut(s) 36, 121
SfcI CTRYAG 1 cut(s) 276
SgeI CNNG 8 cut(s) 31, 125, 132, 177, 207, 214, 323, 332
Sse9I AATT 2 cut(s) 215, 354
SsiI CCGC 3 cut(s) 74, 127, 161
TasI AATT 2 cut(s) 215, 354
TauI GCSGC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 285
TseI GCWGC 2 cut(s) 198, 275
TspDTI ATGAA 3 cut(s) 81, 95, 149
TspRI CASTG 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.