Prupe.6G307700_v2.0.a1

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0003379
Physical Location & Seq
Forward (+)
27713934 .. 27714904
971 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G307700.1

Sequence Viewer

Length: 348 bp
ATGGAAGGAGAGAGAAAGAAAAGGAAGATAGAAAGTGAAGAAGAGGATGAAGAGGAAAAGATTCAGAAATTCTTTGCTCTGATTAGAAGTACAAGGGAGGTGCGTGAACTTTTGAGGGGCAACTCAAGCAATCATGAGTCAAAGGATAAAAAAGATGAGAAGAAGATGCAAGAAGAAGGCAAGGCTGCTGATGCTGGGGCTTGGAACCCAGCATTTCAACCAGAAGACTTCCTTGAGGATGATAAGAGCTCTGGTCATCATGGAGAAGCGGGTCCCTCTAAAACAGAAGAAGATGATAAGAAAGAAGACAAAGGAGGTAATGGTTTAGACCTAAGGCTTTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

116

Amino Acids

13.12

Weight (kDa)

4.95

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 269
AcsI RAATTY 1 cut(s) 68
AfaI GTAC 1 cut(s) 91
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 1 cut(s) 249
AluI AGCT 1 cut(s) 249
Alw21I GWGCWC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 272
AvaII GGWCC 1 cut(s) 272
AxyI CCTNAGG 1 cut(s) 332
BanII GRGCYC 1 cut(s) 251
BbsI GAAGAC 2 cut(s) 231, 312
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 344
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 3 cut(s) 206, 273, 274
BmsI GCATC 2 cut(s) 156, 181
BpiI GAAGAC 2 cut(s) 231, 312
BpuEI CTTGAG 2 cut(s) 109, 254
Bse21I CCTNAGG 1 cut(s) 332
BseGI GGATG 2 cut(s) 52, 244
BseXI GCAGC 1 cut(s) 172
BseYI CCCAGC 2 cut(s) 194, 208
BsiHKAI GWGCWC 1 cut(s) 251
BslFI GGGAC 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 251
BspACI CCGC 1 cut(s) 269
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 3 cut(s) 206, 273, 274
Bst6I CTCTTC 2 cut(s) 36, 45
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 2 cut(s) 52, 244
BstMWI GCNNNNNNNGC 2 cut(s) 126, 191
BstSFI CTRYAG 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 2 cut(s) 231, 312
Bsu36I CCTNAGG 1 cut(s) 332
BtsCI GGATG 2 cut(s) 52, 244
CciI TCATGA 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 90
CviAII CATG 2 cut(s) 134, 260
CviJI RGCY 4 cut(s) 185, 200, 249, 337
CviKI_1 RGCY 4 cut(s) 185, 200, 249, 337
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 332
Eam1104I CTCTTC 2 cut(s) 36, 45
EarI CTCTTC 2 cut(s) 36, 45
Ecl136II GAGCTC 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 249
Eco81I CCTNAGG 1 cut(s) 332
EcoICRI GAGCTC 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 251
FaeI CATG 2 cut(s) 137, 263
FaiI YATR 2 cut(s) 135, 261
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 258
FatI CATG 2 cut(s) 133, 259
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 2 cut(s) 59, 251
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 186
GsaI CCCAGC 2 cut(s) 198, 212
Hin1II CATG 2 cut(s) 137, 263
HinfI GANTC 2 cut(s) 61, 137
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 2 cut(s) 66, 81
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 170
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 191
HpyF3I CTNAG 1 cut(s) 332
Hsp92II CATG 2 cut(s) 137, 263
KflI GGGWCCC 1 cut(s) 272
LpnPI CCDG 4 cut(s) 180, 222, 234, 237
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 156, 181
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 1 cut(s) 68
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 7 cut(s) 37, 46, 91, 108, 229, 286, 308
MroXI GAANNNNTTC 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 126, 191
NlaIII CATG 2 cut(s) 137, 263
NlaIV GGNNCC 3 cut(s) 206, 273, 274
PagI TCATGA 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PpuMI RGGWCCY 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 272
PspFI CCCAGC 2 cut(s) 194, 208
PspN4I GGNNCC 3 cut(s) 206, 273, 274
PspPI GGNCC 1 cut(s) 272
PspPPI RGGWCCY 1 cut(s) 272
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SacI GAGCTC 1 cut(s) 251
SatI GCNGC 1 cut(s) 186
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 251
SetI ASST 4 cut(s) 102, 251, 319, 333
SfaNI GCATC 2 cut(s) 156, 181
SfcI CTRYAG 1 cut(s) 344
SinI GGWCC 1 cut(s) 272
SmlI CTYRAG 2 cut(s) 124, 233
SmoI CTYRAG 2 cut(s) 124, 233
Sse9I AATT 1 cut(s) 68
SsiI CCGC 1 cut(s) 269
SstI GAGCTC 1 cut(s) 251
TasI AATT 1 cut(s) 68
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 1 cut(s) 61
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.