Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000384.1

Orthogroup ID

OG0003379

Physical Location & Seq

Genomic Coordinates Reverse (-)

4226 .. 4573

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000384.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggaaggagacagaaagaagaggaagatgaattacgaagaagaggatgaagaggaaaagattgagaagttctttgctctgattaagagtacaaggcaggtgtgtgagatgctcaggggcagctcgaactggccattggagaagaaatatcagaataagaaggaagaggatcgagagaagagaatcggcggtgcttggaacccggcatttcaaccagaagacttccttgatcaagatgataaagccactagtgatggtcatggtgcaggtccttcgaagaatcaagaagaagacaaaaaggaagaagataaaggaggtgatggtttagacctgaagctttctctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NPR1_interact

Protein Analysis

115

Amino Acids

13.35

Weight (kDa)

4.91

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09415
fragaria_vesca	FvH4_1g26630 FvH4_6g08100
malus_domestica	MD17G1279600.v1.1
prunus_persica	Prupe.3G005700_v2.0.a1 Prupe.6G307700_v2.0.a1
pyrus_communis	pycom12g07190 pycom17g27780
rosa_chinensis	RchiOBHm_Chr3g0457921 RchiOBHm_Chr3g0457951 RchiOBHm_Chr3g0486801 RchiOBHm_Chr3g0486811
rosa_laevigata	RLG00000023061 RLG00000025184 RLG00000025186
rosa_multiflora	Rmu_sc0000384.1_g000002
rosa_roxburghii	Rroxscaffold_6G00395570 Rroxscaffold_6G00421440 Rroxscaffold_6G00421470
rosa_rugosa	Rorug03G0023500 Rorug03G0023500 Rorug03G0227200
rosa_samantha	Rh3AG084100 Rh3AG277200 Rh3AG277300 Rh3BG086600 Rh3BG087000 Rh3BG312300 Rh3CG087100 Rh3CG087500 Rh3CG311300 Rh3DG087500 Rh3DG087800 Rh3DG307800
rosa_wichuraiana	Rw0G012320 Rw0G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
Acc36I	ACCTGC	2 cut(s)	88, 257
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	131
AfaI	GTAC	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	212
AhlI	ACTAGT	1 cut(s)	248
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	2 cut(s)	123, 337
AluI	AGCT	2 cut(s)	123, 337
Alw26I	GTCTC	1 cut(s)	3
AlwI	GGATC	1 cut(s)	177
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	269
BalI	TGGCCA	1 cut(s)	133
BarI	GAAGNNNNNNTAC	2 cut(s)	17, 49
BbsI	GAAGAC	2 cut(s)	225, 297
BbvI	GCAGC	1 cut(s)	132
BccI	CCATC	2 cut(s)	248, 314
BcgI	CGANNNNNNTGC	2 cut(s)	255, 289
BclI	TGATCA	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	3
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	344
BfuAI	ACCTGC	2 cut(s)	88, 257
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	2 cut(s)	225, 297
Bpu10I	CCTNAGC	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	132
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	3
BsnI	GGCC	1 cut(s)	133
Bsp119I	TTCGAA	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	169, 229
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	200
BspMI	ACCTGC	2 cut(s)	88, 257
BspPI	GGATC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	134
BssMI	GATC	2 cut(s)	169, 229
Bst6I	CTCTTC	5 cut(s)	14, 36, 45, 159, 173
BstBI	TTCGAA	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	172, 232
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	2 cut(s)	169, 229
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	132
BstV2I	GAAGAC	2 cut(s)	225, 297
BsuRI	GGCC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	52
BveI	ACCTGC	2 cut(s)	88, 257
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	4 cut(s)	123, 133, 245, 337
CviKI_1	RGCY	4 cut(s)	123, 133, 245, 337
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	2 cut(s)	171, 231
DpnII	GATC	2 cut(s)	169, 229
EaeI	YGGCCR	1 cut(s)	131
Eam1104I	CTCTTC	5 cut(s)	14, 36, 45, 159, 173
EarI	CTCTTC	5 cut(s)	14, 36, 45, 159, 173
Eco47I	GGWCC	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	269
FaeI	CATG	1 cut(s)	263
FaiI	YATR	1 cut(s)	261
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	1 cut(s)	263
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	183, 280
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	2 cut(s)	81, 153
Hpy188III	TCNNGA	3 cut(s)	173, 233, 284
HpyAV	CCTTC	2 cut(s)	154, 282
HpyCH4V	TGCA	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	169, 229
LpnPI	CCDG	7 cut(s)	83, 100, 115, 216, 228, 252, 344
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	249
MalI	GATC	2 cut(s)	171, 231
MboI	GATC	2 cut(s)	169, 229
MlsI	TGGCCA	1 cut(s)	133
MluCI	AATT	1 cut(s)	31
MluNI	TGGCCA	1 cut(s)	133
MnlI	CCTC	5 cut(s)	15, 37, 46, 160, 308
Mox20I	TGGCCA	1 cut(s)	133
MscI	TGGCCA	1 cut(s)	133
MseI	TTAA	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	133
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	203
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	2 cut(s)	169, 229
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	200
NspV	TTCGAA	1 cut(s)	275
PaqCI	CACCTGC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	183, 280
PkrI	GCNGC	1 cut(s)	122
PpuMI	RGGWCCY	1 cut(s)	269
Psp5II	RGGWCCY	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	269
PspPPI	RGGWCCY	1 cut(s)	269
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	2 cut(s)	169, 229
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	6 cut(s)	102, 125, 271, 319, 333, 339
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	344
SfuI	TTCGAA	1 cut(s)	275
SinI	GGWCC	1 cut(s)	269
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	201
TaqI	TCGA	3 cut(s)	125, 172, 275
TasI	AATT	1 cut(s)	31
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	183, 280
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	2 cut(s)	44, 63
VpaK11BI	GGWCC	1 cut(s)	269
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.