RLG00000025186

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003379
Physical Location & Seq
Forward (+)
42871368 .. 42871981
614 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025186

Sequence Viewer

Length: 372 bp
ATGGAATATGAAGAAGAGGATGATGATGAGGAAAAGATTGAGAAATTCTTCGCTCTGATTAAGAGTGCGAGACAGGTGCGTCACCTACTCGGGGGAAGCTCGAAATGGACCAAGGAGAAGAGAGATCAGAATAAGAAGGAAGAGAATCAAGAGAAGGCTACCGCCGGCAGTGCTTGGAACCCAGCGTTCCAACCAGAAGACTTCCTTGATCAAGATGATAAGAGTGCTAGTGGTGATCATGGTGCAAGCCCTTTTAAAATTCAAGATGATAAGAGTACTGGTGCTGCTCATGGTGCGAGCCCTTGTAAAATTCAAGAAGAAATGGAACAAGATGAAGGAGGTAATGGTTTAGACCTGAAGCTTTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

124

Amino Acids

13.74

Weight (kDa)

4.63

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 5 - 120 1.4e-20 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 78
AciI CCGC 1 cut(s) 162
AcsI RAATTY 3 cut(s) 44, 258, 309
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 2 cut(s) 263, 314
AluBI AGCT 2 cut(s) 99, 361
AluI AGCT 2 cut(s) 99, 361
Alw26I GTCTC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 3 cut(s) 44, 258, 309
Asp700I GAANNNNTTC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 74, 245
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BclI TGATCA 2 cut(s) 208, 235
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 368
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BmcAI AGTACT 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 108
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 179
BpiI GAAGAC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 283
BseXI GCAGC 1 cut(s) 271
BseYI CCCAGC 1 cut(s) 181
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 3 cut(s) 124, 208, 235
BspACI CCGC 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 3 cut(s) 124, 208, 235
BssT1I CCWWGG 1 cut(s) 111
Bst6I CTCTTC 3 cut(s) 9, 113, 135
BstC8I GCNNGC 3 cut(s) 166, 247, 298
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 3 cut(s) 127, 211, 238
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 3 cut(s) 124, 208, 235
BstMWI GCNNNNNNNGC 2 cut(s) 170, 293
BstSFI CTRYAG 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 25
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 3 cut(s) 166, 247, 298
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 108
CseI GACGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 276
CviAII CATG 2 cut(s) 239, 290
CviJI RGCY 5 cut(s) 99, 158, 249, 300, 361
CviKI_1 RGCY 5 cut(s) 99, 158, 249, 300, 361
CviQI GTAC 1 cut(s) 276
DpnI GATC 3 cut(s) 126, 210, 237
DpnII GATC 3 cut(s) 124, 208, 235
DraI TTTAAA 1 cut(s) 256
DrdI GACNNNNNNGTC 1 cut(s) 78
DseDI GACNNNNNNGTC 1 cut(s) 78
Eam1104I CTCTTC 3 cut(s) 9, 113, 135
EarI CTCTTC 3 cut(s) 9, 113, 135
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 242, 293
FaiI YATR 3 cut(s) 9, 240, 291
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 2 cut(s) 238, 289
FbaI TGATCA 2 cut(s) 208, 235
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 228
GluI GCNGC 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 185
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 242, 293
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 1 cut(s) 145
HpaII CCGG 1 cut(s) 165
HphI GGTGA 2 cut(s) 74, 245
Hpy188I TCNGA 2 cut(s) 57, 129
Hpy188III TCNNGA 4 cut(s) 149, 212, 263, 314
HpyAV CCTTC 3 cut(s) 130, 148, 329
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 293
Hsp92II CATG 2 cut(s) 242, 293
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Ksp22I TGATCA 2 cut(s) 208, 235
Kzo9I GATC 3 cut(s) 124, 208, 235
LpnPI CCDG 6 cut(s) 59, 178, 195, 207, 264, 368
Lsp1109I GCAGC 1 cut(s) 271
MaeI CTAG 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 80
MalI GATC 3 cut(s) 126, 210, 237
MboI GATC 3 cut(s) 124, 208, 235
MboII GAAGA 7 cut(s) 23, 26, 40, 130, 152, 209, 329
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 3 cut(s) 44, 258, 309
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 3 cut(s) 10, 22, 332
MroNI GCCGGC 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 2 cut(s) 60, 255
MspI CCGG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 170, 293
NaeI GCCGGC 1 cut(s) 166
NdeII GATC 3 cut(s) 124, 208, 235
NgoMIV GCCGGC 1 cut(s) 164
NlaIII CATG 2 cut(s) 242, 293
NlaIV GGNNCC 1 cut(s) 179
NmuCI GTSAC 1 cut(s) 80
PdiI GCCGGC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 179
PspPI GGNCC 1 cut(s) 108
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 2 cut(s) 60, 255
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 3 cut(s) 124, 208, 235
Sau96I GGNCC 1 cut(s) 108
ScaI AGTACT 1 cut(s) 277
SduI GDGCHC 1 cut(s) 302
SetI ASST 6 cut(s) 78, 87, 101, 343, 357, 363
SfcI CTRYAG 1 cut(s) 368
SinI GGWCC 1 cut(s) 108
Sse9I AATT 3 cut(s) 44, 258, 309
SsiI CCGC 1 cut(s) 162
SspMI CTAG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 111
TaqI TCGA 1 cut(s) 101
TasI AATT 3 cut(s) 44, 258, 309
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 2 cut(s) 60, 255
Tru9I TTAA 2 cut(s) 60, 255
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 24, 348
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 3 cut(s) 44, 258, 309
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 1 cut(s) 228
ZrmI AGTACT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.