RLG00000023061

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003379
Physical Location & Seq
Forward (+)
17512711 .. 17513571
861 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023061

Sequence Viewer

Length: 477 bp
ATGTGGAAAAGCAGCAAGCAAAGGCTGCAAAGCGAGGCTCTGTTTGATTTCTACGACTGTCTTCACATGGAGATCAATGAGAGCAAGAAGAAGAGGAAGGTTGGTGATGGCGATGATGGGCAACAGAACAATGAAGAAGCGGAAATGCAGATCTTCTTTGCTCTCATCAACAACATTCGCGAAGCTCGTCTGCGGTTGATGAATGGCTCAAATGTGGTATTGAATGCGGCTGGGATGGATCAAAATGACGACAACAGAACAAGCAGCAAGAAGAAGAAGTTGATAGAGGAAGAGAAAGAGAAGGACAGGTCCAAACAGATGTTCAATAGTGCTGCAGTGAGGAAGCCATCATTAGTATTTCAGCGTCAAGATTTTCGGGAAGAGGCTCAGTTTAAAATCCCTACTTCTCAAATTAGTAGAGGAGGTGAGAAAGGAAAGATTAAAGATTGTAACTTAGATCTTACTCTTTCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

159

Amino Acids

18.27

Weight (kDa)

8.83

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 42 - 138 1.7e-11 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 180
AciI CCGC 3 cut(s) 140, 193, 227
AclWI GGATC 1 cut(s) 246
AgsI TTSAA 2 cut(s) 223, 325
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
AlwI GGATC 1 cut(s) 246
ApeKI GCWGC 4 cut(s) 12, 25, 264, 332
AspS9I GGNCC 1 cut(s) 309
AsuHPI GGTGA 2 cut(s) 116, 437
AvaII GGWCC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 4 cut(s) 12, 24, 276, 319
BccI CCATC 4 cut(s) 101, 110, 229, 355
BfmI CTRYAG 1 cut(s) 333
BglII AGATCT 2 cut(s) 150, 457
BisI GCNGC 5 cut(s) 13, 26, 228, 265, 333
BlsI GCNGC 5 cut(s) 14, 27, 229, 266, 334
Bme18I GGWCC 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 53
BseGI GGATG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 401
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 4 cut(s) 12, 24, 276, 319
BseYI CCCAGC 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 180
BsmI GAATGC 1 cut(s) 229
Bsp143I GATC 4 cut(s) 72, 150, 238, 457
Bsp68I TCGCGA 1 cut(s) 180
BspACI CCGC 3 cut(s) 140, 193, 227
BspCNI CTCAG 1 cut(s) 400
BspFNI CGCG 1 cut(s) 180
BspMAI CTGCAG 1 cut(s) 337
BspPI GGATC 1 cut(s) 246
BssMI GATC 4 cut(s) 72, 150, 238, 457
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 3 cut(s) 86, 285, 375
BstAPI GCANNNNNTGC 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 387, 454
BstF5I GGATG 1 cut(s) 240
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 4 cut(s) 75, 153, 241, 460
BstMBI GATC 4 cut(s) 72, 150, 238, 457
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 333
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 12, 24, 276, 319
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 2 cut(s) 150, 457
BstYI RGATCY 2 cut(s) 150, 457
BtgZI GCGATG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
BtuMI TCGCGA 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 309
CseI GACGC 1 cut(s) 353
CviAII CATG 1 cut(s) 67
CviJI RGCY 7 cut(s) 25, 38, 185, 207, 230, 346, 386
CviKI_1 RGCY 7 cut(s) 25, 38, 185, 207, 230, 346, 386
DdeI CTNAG 2 cut(s) 387, 454
DpnI GATC 4 cut(s) 74, 152, 240, 459
DpnII GATC 4 cut(s) 72, 150, 238, 457
DraI TTTAAA 1 cut(s) 394
Eam1104I CTCTTC 3 cut(s) 86, 285, 375
EarI CTCTTC 3 cut(s) 86, 285, 375
Eco47I GGWCC 1 cut(s) 309
FaeI CATG 1 cut(s) 70
FaiI YATR 2 cut(s) 68, 475
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 5 cut(s) 13, 26, 228, 265, 333
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 5 cut(s) 13, 26, 228, 265, 333
GluI GCNGC 5 cut(s) 13, 26, 228, 265, 333
GsaI CCCAGC 1 cut(s) 234
HgaI GACGC 1 cut(s) 353
Hin1II CATG 1 cut(s) 70
HphI GGTGA 2 cut(s) 116, 437
Hpy188III TCNNGA 3 cut(s) 179, 368, 377
HpyAV CCTTC 2 cut(s) 91, 295
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 28, 148, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 2 cut(s) 387, 454
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 4 cut(s) 72, 150, 238, 457
LpnPI CCDG 2 cut(s) 216, 292
Lsp1109I GCAGC 4 cut(s) 12, 24, 276, 319
MaeIII GTNAC 1 cut(s) 449
MalI GATC 4 cut(s) 74, 152, 240, 459
MboI GATC 4 cut(s) 72, 150, 238, 457
MboII GAAGA 9 cut(s) 53, 100, 103, 145, 146, 283, 286, 302, 392
MflI RGATCY 2 cut(s) 150, 457
MluCI AATT 1 cut(s) 411
MnlI CCTC 7 cut(s) 28, 87, 280, 333, 376, 413, 416
MseI TTAA 2 cut(s) 393, 441
Mva1269I GAATGC 1 cut(s) 229
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 4 cut(s) 72, 150, 238, 457
NlaIII CATG 1 cut(s) 70
NruI TCGCGA 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PctI GAATGC 1 cut(s) 229
PkrI GCNGC 5 cut(s) 14, 27, 229, 266, 334
PspFI CCCAGC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 309
PstI CTGCAG 1 cut(s) 337
PsuI RGATCY 2 cut(s) 150, 457
RruI TCGCGA 1 cut(s) 180
SaqAI TTAA 2 cut(s) 393, 441
SatI GCNGC 5 cut(s) 13, 26, 228, 265, 333
Sau3AI GATC 4 cut(s) 72, 150, 238, 457
Sau96I GGNCC 1 cut(s) 309
SetI ASST 4 cut(s) 102, 187, 311, 427
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 309
Sse9I AATT 1 cut(s) 411
SsiI CCGC 3 cut(s) 140, 193, 227
TaaI ACNGT 1 cut(s) 59
TasI AATT 1 cut(s) 411
TauI GCSGC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 393, 441
Tru9I TTAA 2 cut(s) 393, 441
TscAI CASTG 1 cut(s) 342
TseI GCWGC 4 cut(s) 12, 25, 264, 332
TspDTI ATGAA 2 cut(s) 147, 215
TspRI CASTG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.