Rroxscaffold_6G00421440

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003379
Physical Location & Seq
Forward (+)
42591384 .. 42591731
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00421440.1

Sequence Viewer

Length: 348 bp
ATGGAAGGAGACAGAAAGAAGAGGAAGATGGATTACGAAGAAGAGGATGAAGAGGAAAAGATTGAGAAGTTCTTTGCTCTGATTAAGAGTACAAGGCAGGTGTGTGAGATACTCAGGGGCAGCTCGAACTGGCCATTGGGGAAGAAAGATCAGAATAAGAAGGAAGAGGATCGAGAGAAGAGAACCGGCGGTGCTTGGAACCCGGCATTTCAACCAGAAGACTTCCTTGATCAAGATGATAAAGCCACTAGTGATGGTCATGGTGCAGGTCCTTCAAAGAATCAAGAAGAAGACAAAAAGGAAGAAGATAAAGGAGGTGATGGTTTAGACCTGAAGCTTTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

115

Amino Acids

13.21

Weight (kDa)

4.83

Isoelectric Point (pI)

58.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 13 - 106 3.9e-20 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 88
Acc36I ACCTGC 2 cut(s) 88, 257
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 177
AcoI YGGCCR 1 cut(s) 131
AfaI GTAC 1 cut(s) 91
AgsI TTSAA 2 cut(s) 212, 276
AhlI ACTAGT 1 cut(s) 248
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 2 cut(s) 123, 337
AluI AGCT 2 cut(s) 123, 337
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 1 cut(s) 177
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 329
AvaII GGWCC 1 cut(s) 269
BalI TGGCCA 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 17, 49
BbsI GAAGAC 2 cut(s) 225, 297
BbvI GCAGC 1 cut(s) 132
BccI CCATC 3 cut(s) 22, 248, 314
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 3
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 344
BfuAI ACCTGC 2 cut(s) 88, 257
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 203
BpiI GAAGAC 2 cut(s) 225, 297
BpuMI CCSGG 1 cut(s) 203
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 132
BsgI GTGCAG 1 cut(s) 285
BshFI GGCC 1 cut(s) 133
BsiSI CCGG 2 cut(s) 186, 203
BsmAI GTCTC 1 cut(s) 3
BsnI GGCC 1 cut(s) 133
Bsp143I GATC 3 cut(s) 148, 169, 229
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 200
BspMI ACCTGC 2 cut(s) 88, 257
BspPI GGATC 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 3 cut(s) 148, 169, 229
Bst6I CTCTTC 5 cut(s) 14, 36, 45, 159, 173
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 3 cut(s) 151, 172, 232
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 3 cut(s) 148, 169, 229
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 2 cut(s) 225, 297
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 52
BveI ACCTGC 2 cut(s) 88, 257
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 260
CviJI RGCY 4 cut(s) 123, 133, 245, 337
CviKI_1 RGCY 4 cut(s) 123, 133, 245, 337
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 113
DpnI GATC 3 cut(s) 150, 171, 231
DpnII GATC 3 cut(s) 148, 169, 229
EaeI YGGCCR 1 cut(s) 131
Eam1104I CTCTTC 5 cut(s) 14, 36, 45, 159, 173
EarI CTCTTC 5 cut(s) 14, 36, 45, 159, 173
Eco47I GGWCC 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 269
FaeI CATG 1 cut(s) 263
FaiI YATR 1 cut(s) 261
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 1 cut(s) 259
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 1 cut(s) 249
GluI GCNGC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 133
HapII CCGG 2 cut(s) 186, 203
Hin1II CATG 1 cut(s) 263
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 1 cut(s) 280
HpaII CCGG 2 cut(s) 186, 203
HphI GGTGA 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 81, 153
Hpy188III TCNNGA 3 cut(s) 173, 233, 284
HpyAV CCTTC 2 cut(s) 154, 282
HpyCH4V TGCA 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 1 cut(s) 263
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 148, 169, 229
LpnPI CCDG 8 cut(s) 83, 100, 115, 199, 216, 228, 252, 344
Lsp1109I GCAGC 1 cut(s) 132
MaeI CTAG 1 cut(s) 249
MalI GATC 3 cut(s) 150, 171, 231
MboI GATC 3 cut(s) 148, 169, 229
MlsI TGGCCA 1 cut(s) 133
MluNI TGGCCA 1 cut(s) 133
MnlI CCTC 5 cut(s) 15, 37, 46, 160, 308
Mox20I TGGCCA 1 cut(s) 133
MscI TGGCCA 1 cut(s) 133
MseI TTAA 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 133
MspI CCGG 2 cut(s) 186, 203
MspR9I CCNGG 1 cut(s) 203
NciI CCSGG 1 cut(s) 203
NdeII GATC 3 cut(s) 148, 169, 229
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 200
PaqCI CACCTGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 1 cut(s) 269
PspPPI RGGWCCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 3 cut(s) 148, 169, 229
Sau96I GGNCC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 203
SetI ASST 6 cut(s) 102, 125, 271, 319, 333, 339
SfcI CTRYAG 1 cut(s) 344
SinI GGWCC 1 cut(s) 269
SpeI ACTAGT 1 cut(s) 248
SsiI CCGC 1 cut(s) 189
SspMI CTAG 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 201
TaqI TCGA 2 cut(s) 125, 172
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseI GCWGC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 269
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.