Rh3BG312300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003379
Physical Location & Seq
Reverse (-)
31718870 .. 31720026
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG312300.1

Sequence Viewer

Length: 441 bp
ATGGAGATCAATGAGAGCAAGAAGAAGAGGAAGGCTAGTGATGGCGATGATGAGCAACAGAACAATGAAGAAGCGGAAATGCAGATCTTCTTTGCTCTCGTCAACAACATTCGCGAAGCTCGTCTGCGGTTGATGAATGGCTCGAATGTGGTATTGAATGCGGCCGGGATGGATCAAAATGACGACAACAGAACAAGCAGCAAGAAGAAGAAGAAGAAGTTGATAGAGGAAGAGGAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAGGAGAGGTGCAAACAGATGTTCAATAGTGCTGCAGTGAGGAAGCCATCATTAGTATTTCAGCGTCAAGATTTACGGGAAGAGGCTCAGTTTAAAATCCCTACTTCTCAAATTAGTAGAGGAGGTGAGAAAGGAAAGATTACAGATTGTAACTTAGATCTTACTCTTTCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.87

Weight (kDa)

7.68

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 74, 127, 161
AclWI GGATC 1 cut(s) 180
AcoI YGGCCR 1 cut(s) 162
AgsI TTSAA 2 cut(s) 157, 289
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
AlwI GGATC 1 cut(s) 180
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 198, 296
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 401
BbvI GCAGC 2 cut(s) 210, 283
BccI CCATC 3 cut(s) 35, 163, 319
BcnI CCSGG 1 cut(s) 166
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 297
BglII AGATCT 2 cut(s) 84, 421
BisI GCNGC 3 cut(s) 162, 199, 297
BlsI GCNGC 3 cut(s) 163, 200, 298
Bme1390I CCNGG 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 166
BpuMI CCSGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 399
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 210, 283
Bsh1236I CGCG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 165
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 4 cut(s) 6, 84, 172, 421
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 3 cut(s) 74, 127, 161
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 364
BspFNI CGCG 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 301
BspPI GGATC 1 cut(s) 180
BssMI GATC 4 cut(s) 6, 84, 172, 421
Bst6I CTCTTC 4 cut(s) 20, 225, 231, 339
BstDEI CTNAG 2 cut(s) 351, 418
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 4 cut(s) 9, 87, 175, 424
BstMBI GATC 4 cut(s) 6, 84, 172, 421
BstMCI CGRYCG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 297
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 210, 283
BstX2I RGATCY 2 cut(s) 84, 421
BstYI RGATCY 2 cut(s) 84, 421
BstZI CGGCCG 1 cut(s) 162
BsuRI GGCC 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 306
BtuMI TCGCGA 1 cut(s) 114
CseI GACGC 1 cut(s) 317
CviJI RGCY 6 cut(s) 35, 119, 141, 164, 310, 350
CviKI_1 RGCY 6 cut(s) 35, 119, 141, 164, 310, 350
DdeI CTNAG 2 cut(s) 351, 418
DpnI GATC 4 cut(s) 8, 86, 174, 423
DpnII GATC 4 cut(s) 6, 84, 172, 421
DraI TTTAAA 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 162
EagI CGGCCG 1 cut(s) 162
Eam1104I CTCTTC 4 cut(s) 20, 225, 231, 339
EarI CTCTTC 4 cut(s) 20, 225, 231, 339
EclXI CGGCCG 1 cut(s) 162
Eco52I CGGCCG 1 cut(s) 162
FaiI YATR 1 cut(s) 439
Fnu4HI GCNGC 3 cut(s) 162, 199, 297
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 3 cut(s) 162, 199, 297
FspBI CTAG 1 cut(s) 36
GluI GCNGC 3 cut(s) 162, 199, 297
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 113, 332
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 25, 259
HpyCH4V TGCA 3 cut(s) 82, 276, 299
HpyF3I CTNAG 2 cut(s) 351, 418
Kzo9I GATC 4 cut(s) 6, 84, 172, 421
LpnPI CCDG 1 cut(s) 178
Lsp1109I GCAGC 2 cut(s) 210, 283
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 413
MalI GATC 4 cut(s) 8, 86, 174, 423
MboI GATC 4 cut(s) 6, 84, 172, 421
MflI RGATCY 2 cut(s) 84, 421
MluCI AATT 1 cut(s) 375
MnlI CCTC 8 cut(s) 21, 220, 226, 264, 297, 340, 377, 380
MseI TTAA 1 cut(s) 357
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 166
Mva1269I GAATGC 1 cut(s) 163
MvnI CGCG 1 cut(s) 114
NciI CCSGG 1 cut(s) 166
NdeII GATC 4 cut(s) 6, 84, 172, 421
NruI TCGCGA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PctI GAATGC 1 cut(s) 163
PkrI GCNGC 3 cut(s) 163, 200, 298
PstI CTGCAG 1 cut(s) 301
PsuI RGATCY 2 cut(s) 84, 421
RruI TCGCGA 1 cut(s) 114
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 3 cut(s) 162, 199, 297
Sau3AI GATC 4 cut(s) 6, 84, 172, 421
ScrFI CCNGG 1 cut(s) 166
SetI ASST 3 cut(s) 121, 275, 391
SfcI CTRYAG 1 cut(s) 297
Sse9I AATT 1 cut(s) 375
SsiI CCGC 3 cut(s) 74, 127, 161
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 164
TaqI TCGA 1 cut(s) 143
TasI AATT 1 cut(s) 375
TauI GCSGC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 306
TseI GCWGC 2 cut(s) 198, 296
TspDTI ATGAA 2 cut(s) 81, 149
TspRI CASTG 1 cut(s) 306
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.