Rh3DG307800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003379
Physical Location & Seq
Reverse (-)
32822940 .. 32824396
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG307800.1

Sequence Viewer

Length: 420 bp
ATGGAGATCAATGAGAGCAAGAAGAAGAGGAAGGTTAGTGATGGCGATGATGAGCAACAGAACAATGAAGAAGCGGAAATGCAGATCTTCTTTGCTCTCGTCAACAACATTCGCGAGGCTCGTCTGCGGTTGATGAATGGCTCAAATGTGGTATTGAATGCGGCCGGGATGGATCAAAATGACGACAACAGAACAAGCAGCAAGAAGAAGAGGAAGTTGATAGAGGAAGAGGAAGAGAAAGAGAAGGAGAGGTCCAAACAGATGTTCAATAGTGCTGCAGTGAGGAAGCCATCATTAGTATTTCAGCGTCAAGATTTACGGGAAGAGGCTCAGTTTAAAATCCCTACTTCTCAAATTAGTAGAGGAGGTGAGAAAGGAAAGATTACAGATTGTAACTTAGATCTTACTCTTTCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.01

Weight (kDa)

6.43

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 20 - 118 1.4e-06 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 74, 127, 161
AclWI GGATC 1 cut(s) 180
AcoI YGGCCR 1 cut(s) 162
AgsI TTSAA 2 cut(s) 157, 268
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AlwI GGATC 1 cut(s) 180
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 198, 275
AspS9I GGNCC 1 cut(s) 252
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 380
AvaII GGWCC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 210, 262
BccI CCATC 3 cut(s) 35, 163, 298
BcnI CCSGG 1 cut(s) 166
BfmI CTRYAG 1 cut(s) 276
BglII AGATCT 2 cut(s) 84, 400
BisI GCNGC 3 cut(s) 162, 199, 276
BlsI GCNGC 3 cut(s) 163, 200, 277
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 166
BpuMI CCSGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 378
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 210, 262
Bsh1236I CGCG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 165
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 4 cut(s) 6, 84, 172, 400
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 3 cut(s) 74, 127, 161
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 343
BspFNI CGCG 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 1 cut(s) 180
BssMI GATC 4 cut(s) 6, 84, 172, 400
Bst6I CTCTTC 5 cut(s) 20, 203, 222, 228, 318
BstDEI CTNAG 2 cut(s) 330, 397
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 4 cut(s) 9, 87, 175, 403
BstMBI GATC 4 cut(s) 6, 84, 172, 400
BstMCI CGRYCG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 276
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 210, 262
BstX2I RGATCY 2 cut(s) 84, 400
BstYI RGATCY 2 cut(s) 84, 400
BstZI CGGCCG 1 cut(s) 162
BsuRI GGCC 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
BtuMI TCGCGA 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 252
CseI GACGC 1 cut(s) 296
CviJI RGCY 5 cut(s) 119, 141, 164, 289, 329
CviKI_1 RGCY 5 cut(s) 119, 141, 164, 289, 329
DdeI CTNAG 2 cut(s) 330, 397
DpnI GATC 4 cut(s) 8, 86, 174, 402
DpnII GATC 4 cut(s) 6, 84, 172, 400
DraI TTTAAA 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 162
EagI CGGCCG 1 cut(s) 162
Eam1104I CTCTTC 5 cut(s) 20, 203, 222, 228, 318
EarI CTCTTC 5 cut(s) 20, 203, 222, 228, 318
EclXI CGGCCG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 252
Eco52I CGGCCG 1 cut(s) 162
Fnu4HI GCNGC 3 cut(s) 162, 199, 276
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 3 cut(s) 162, 199, 276
GluI GCNGC 3 cut(s) 162, 199, 276
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 296
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 113, 311
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 25, 238
HpyCH4V TGCA 2 cut(s) 82, 278
HpyF3I CTNAG 2 cut(s) 330, 397
Kzo9I GATC 4 cut(s) 6, 84, 172, 400
LpnPI CCDG 1 cut(s) 178
Lsp1109I GCAGC 2 cut(s) 210, 262
MaeIII GTNAC 1 cut(s) 392
MalI GATC 4 cut(s) 8, 86, 174, 402
MboI GATC 4 cut(s) 6, 84, 172, 400
MboII GAAGA 9 cut(s) 34, 37, 79, 80, 217, 220, 239, 245, 335
MflI RGATCY 2 cut(s) 84, 400
MluCI AATT 1 cut(s) 354
MseI TTAA 1 cut(s) 336
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 166
Mva1269I GAATGC 1 cut(s) 163
MvnI CGCG 1 cut(s) 114
NciI CCSGG 1 cut(s) 166
NdeII GATC 4 cut(s) 6, 84, 172, 400
NruI TCGCGA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PctI GAATGC 1 cut(s) 163
PkrI GCNGC 3 cut(s) 163, 200, 277
PspPI GGNCC 1 cut(s) 252
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 2 cut(s) 84, 400
RruI TCGCGA 1 cut(s) 114
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 3 cut(s) 162, 199, 276
Sau3AI GATC 4 cut(s) 6, 84, 172, 400
Sau96I GGNCC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 166
SetI ASST 3 cut(s) 36, 254, 370
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 1 cut(s) 252
Sse9I AATT 1 cut(s) 354
SsiI CCGC 3 cut(s) 74, 127, 161
StyD4I CCNGG 1 cut(s) 164
TasI AATT 1 cut(s) 354
TauI GCSGC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 285
TseI GCWGC 2 cut(s) 198, 275
TspDTI ATGAA 2 cut(s) 81, 149
TspRI CASTG 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.