Rh3CG087100

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003379
Physical Location & Seq
Reverse (-)
6798776 .. 6799777
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG087100.1

Sequence Viewer

Length: 399 bp
ATGGAAGGAGAAAGAAAGAAAAGAAAGATGGAATATGAAGAAGAGGATGATGATGAGGAAAAGATTGAGAAATTCTTCGCTCTGATTAAGAGTACGAGACAGGTGCGTCACCTACTCGGGGGAAGCTCGAAATGGACCAAGGAGAAGAGAGATCAGAATAAGAAGGAAGATGATCAAGAGAAGGCTACCGCCGGCAGCGCTTGGAACCCAGAGTTCCAACCAGAAGACTTCCTTGATCAAGATGATAAGAGAGCTAGTGCTGGTCATGGTGCAAACCCTTTTAAAATTCAAGATGATAAGAGTACTCGTGCTGGTCATGGTGCAAGCCCTTGTAAAATTCAAGAAGAAATGGAAGAAGATGAAGGAGGTAATGGTTTAGACCTGAAGCTTTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

132

Amino Acids

15.1

Weight (kDa)

4.94

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 14 - 129 2.8e-20 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 105
AciI CCGC 1 cut(s) 189
AcsI RAATTY 3 cut(s) 71, 285, 336
AfaI GTAC 2 cut(s) 94, 304
AfeI AGCGCT 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 290, 341
AluBI AGCT 3 cut(s) 126, 254, 388
AluI AGCT 3 cut(s) 126, 254, 388
Alw26I GTCTC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 116
Aor51HI AGCGCT 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 195
ApoI RAATTY 3 cut(s) 71, 285, 336
Asp700I GAANNNNTTC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 1 cut(s) 135
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 207
BccI CCATC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BclI TGATCA 2 cut(s) 172, 235
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 395
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
BmcAI AGTACT 1 cut(s) 304
Bme18I GGWCC 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 91
BsoBI CYCGRG 1 cut(s) 116
Bsp143I GATC 3 cut(s) 151, 172, 235
BspACI CCGC 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 3 cut(s) 151, 172, 235
BssSI CACGAG 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 306
Bst6I CTCTTC 2 cut(s) 36, 140
BstC8I GCNNGC 2 cut(s) 193, 325
BstF5I GGATG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 3 cut(s) 154, 175, 238
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 3 cut(s) 151, 172, 235
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 395
BstV1I GCAGC 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 193, 325
CfoI GCGC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 135
CseI GACGC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 93, 303
CviAII CATG 2 cut(s) 266, 317
CviJI RGCY 5 cut(s) 126, 185, 254, 327, 388
CviKI_1 RGCY 5 cut(s) 126, 185, 254, 327, 388
CviQI GTAC 2 cut(s) 93, 303
DpnI GATC 3 cut(s) 153, 174, 237
DpnII GATC 3 cut(s) 151, 172, 235
DraI TTTAAA 1 cut(s) 283
DrdI GACNNNNNNGTC 1 cut(s) 105
DseDI GACNNNNNNGTC 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 36, 140
EarI CTCTTC 2 cut(s) 36, 140
Eco130I CCWWGG 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 135
Eco47III AGCGCT 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 269, 320
FaiI YATR 3 cut(s) 36, 267, 318
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 2 cut(s) 265, 316
FbaI TGATCA 2 cut(s) 172, 235
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 1 cut(s) 255
GlaI GCGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 196
HaeII RGCGCY 1 cut(s) 201
HapII CCGG 1 cut(s) 192
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 269, 320
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 386
HpaII CCGG 1 cut(s) 192
HphI GGTGA 1 cut(s) 101
Hpy188I TCNGA 2 cut(s) 84, 156
Hpy188III TCNNGA 4 cut(s) 176, 239, 290, 341
HpyAV CCTTC 3 cut(s) 157, 175, 356
HpyCH4V TGCA 2 cut(s) 272, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
Hsp92II CATG 2 cut(s) 269, 320
HspAI GCGC 1 cut(s) 198
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Ksp22I TGATCA 2 cut(s) 172, 235
Kzo9I GATC 3 cut(s) 151, 172, 235
LpnPI CCDG 7 cut(s) 86, 205, 222, 234, 246, 297, 395
Lsp1109I GCAGC 1 cut(s) 207
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 107
MalI GATC 3 cut(s) 153, 174, 237
MboI GATC 3 cut(s) 151, 172, 235
MboII GAAGA 9 cut(s) 50, 53, 67, 157, 179, 236, 356, 365, 368
MluCI AATT 3 cut(s) 71, 285, 336
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 3 cut(s) 37, 49, 359
MroNI GCCGGC 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 2 cut(s) 87, 282
MspI CCGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 197
NaeI GCCGGC 1 cut(s) 193
NdeII GATC 3 cut(s) 151, 172, 235
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 2 cut(s) 269, 320
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 107
PdiI GCCGGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 135
RsaI GTAC 2 cut(s) 94, 304
RsaNI GTAC 2 cut(s) 93, 303
SaqAI TTAA 2 cut(s) 87, 282
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 3 cut(s) 151, 172, 235
Sau96I GGNCC 1 cut(s) 135
ScaI AGTACT 1 cut(s) 304
SetI ASST 7 cut(s) 105, 114, 128, 256, 370, 384, 390
SfcI CTRYAG 1 cut(s) 395
SinI GGWCC 1 cut(s) 135
Sse9I AATT 3 cut(s) 71, 285, 336
SsiI CCGC 1 cut(s) 189
SspMI CTAG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 138
TaqI TCGA 1 cut(s) 128
TasI AATT 3 cut(s) 71, 285, 336
TatI WGTACW 1 cut(s) 302
Tru1I TTAA 2 cut(s) 87, 282
Tru9I TTAA 2 cut(s) 87, 282
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 51, 375
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 3 cut(s) 71, 285, 336
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 1 cut(s) 255
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.