Rroxscaffold_6G00421470

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003379
Physical Location & Seq
Forward (+)
42617398 .. 42617796
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00421470.1

Sequence Viewer

Length: 399 bp
ATGGAAGGAGGAAGAAAGAAAAGAAAGATGGAATATGAAGAAGAGGATGATGATGAGGAAAAGATTGAGAAATTCTTCGCTCTGATTAAGAGTACGAGACAGGTGCGTCACCTACTCGGGGGAAGCTCGAAATGGGCCAAGGAGAAGAGAGATCAGAATAAGAAGGAAGAGGATCAAGAGAAGGCTACCGCCGGCAGTGTTTGGAACCCAGCGTTCCAACCAGAAGACTTCCTTGATCAAGATGATAAAAGTGCTAGTTGTGATCATGATGCAAGCCCTTTTAAAATTCAAGGTGATAAGAGTACTGGTGCTGGTCATGGTGCAAGCCCTTGTAAAATTCAAGAAGAAATGGAAGAAGATGAAGGAGGTAATGGTTTAGACCTGAAGCTTTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

132

Amino Acids

14.88

Weight (kDa)

4.84

Isoelectric Point (pI)

57.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 14 - 129 1.8e-20 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 105
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 180
AcsI RAATTY 3 cut(s) 71, 285, 336
AfaI GTAC 2 cut(s) 94, 304
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 290, 341
AluBI AGCT 2 cut(s) 126, 388
AluI AGCT 2 cut(s) 126, 388
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 1 cut(s) 180
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 1 cut(s) 135
ApoI RAATTY 3 cut(s) 71, 285, 336
Asp700I GAANNNNTTC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 101, 305
AvaI CYCGRG 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 231
BccI CCATC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BclI TGATCA 2 cut(s) 235, 262
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 395
BmcAI AGTACT 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 206
BmsI GCATC 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 310
BseYI CCCAGC 1 cut(s) 208
BshFI GGCC 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 91
BsnI GGCC 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 116
Bsp143I GATC 4 cut(s) 151, 172, 235, 262
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 137
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 4 cut(s) 151, 172, 235, 262
BssT1I CCWWGG 1 cut(s) 138
Bst6I CTCTTC 3 cut(s) 36, 140, 162
BstC8I GCNNGC 3 cut(s) 193, 274, 325
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 4 cut(s) 154, 175, 238, 265
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 4 cut(s) 151, 172, 235, 262
BstSFI CTRYAG 1 cut(s) 395
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 3 cut(s) 193, 274, 325
CciI TCATGA 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 135
CseI GACGC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 93, 303
CviAII CATG 2 cut(s) 266, 317
CviJI RGCY 6 cut(s) 126, 137, 185, 276, 327, 388
CviKI_1 RGCY 6 cut(s) 126, 137, 185, 276, 327, 388
CviQI GTAC 2 cut(s) 93, 303
DpnI GATC 4 cut(s) 153, 174, 237, 264
DpnII GATC 4 cut(s) 151, 172, 235, 262
DraI TTTAAA 1 cut(s) 283
DrdI GACNNNNNNGTC 1 cut(s) 105
DseDI GACNNNNNNGTC 1 cut(s) 105
Eam1104I CTCTTC 3 cut(s) 36, 140, 162
EarI CTCTTC 3 cut(s) 36, 140, 162
Eco130I CCWWGG 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 269, 320
FaiI YATR 3 cut(s) 36, 267, 318
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 2 cut(s) 265, 316
FbaI TGATCA 2 cut(s) 235, 262
FokI GGATG 1 cut(s) 59
FspBI CTAG 1 cut(s) 255
GsaI CCCAGC 1 cut(s) 212
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 192
HgaI GACGC 1 cut(s) 95
Hin1II CATG 2 cut(s) 269, 320
HindIII AAGCTT 1 cut(s) 386
HpaII CCGG 1 cut(s) 192
HphI GGTGA 2 cut(s) 101, 305
Hpy188I TCNGA 2 cut(s) 84, 156
Hpy188III TCNNGA 4 cut(s) 176, 239, 266, 341
HpyAV CCTTC 3 cut(s) 157, 175, 356
HpyCH4V TGCA 2 cut(s) 272, 323
Hsp92II CATG 2 cut(s) 269, 320
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Ksp22I TGATCA 2 cut(s) 235, 262
Kzo9I GATC 4 cut(s) 151, 172, 235, 262
LpnPI CCDG 7 cut(s) 86, 205, 222, 234, 291, 297, 395
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 107
MalI GATC 4 cut(s) 153, 174, 237, 264
MboI GATC 4 cut(s) 151, 172, 235, 262
MluCI AATT 3 cut(s) 71, 285, 336
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 4 cut(s) 37, 49, 163, 359
MroNI GCCGGC 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 2 cut(s) 87, 282
MspI CCGG 1 cut(s) 192
NaeI GCCGGC 1 cut(s) 193
NdeII GATC 4 cut(s) 151, 172, 235, 262
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 2 cut(s) 269, 320
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 107
PagI TCATGA 1 cut(s) 265
PdiI GCCGGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 135
RsaI GTAC 2 cut(s) 94, 304
RsaNI GTAC 2 cut(s) 93, 303
SaqAI TTAA 2 cut(s) 87, 282
Sau3AI GATC 4 cut(s) 151, 172, 235, 262
Sau96I GGNCC 1 cut(s) 135
ScaI AGTACT 1 cut(s) 304
SetI ASST 7 cut(s) 105, 114, 128, 295, 370, 384, 390
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 395
Sse9I AATT 3 cut(s) 71, 285, 336
SsiI CCGC 1 cut(s) 189
SspMI CTAG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 138
TaqI TCGA 1 cut(s) 128
TasI AATT 3 cut(s) 71, 285, 336
TatI WGTACW 1 cut(s) 302
Tru1I TTAA 2 cut(s) 87, 282
Tru9I TTAA 2 cut(s) 87, 282
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 51, 375
TspRI CASTG 1 cut(s) 202
XapI RAATTY 3 cut(s) 71, 285, 336
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 1 cut(s) 255
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.