MD17G1279600.v1.1

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0003379
Physical Location & Seq
Forward (+)
34014508 .. 34017525
3018 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1279600.v1.1.491

Sequence Viewer

Length: 357 bp
ATGGAGACCTGCAAGGAGAGCAACAAAAGGAAGATGATCAATAGCGACGTTGATGATGACGATGAAGAAGAGAAAATTGAGTTGTTCTTTGCTCTTATCAACAACATCCGGAAAGCTCGTGATCGGTTGATGAATGGTTCGAATGTGTCGAAAGGGAGCGAAATTCATGAGAACGTATCAACCAAGAAGAATAAAGGGAAAGTGGTAGAGGAAGATGAGGAAGAGAAGACCACAGCTGGAGTTTGGAAGCCAACTTTTCAGCTTGAAGATTTAACGGAAGCGGCGACTCAGATCAAAATCCCTCATGTCATCTCTCGGGGAATCGTCAAGACTTTGAAGGCTAAAGTTGAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

119

Amino Acids

13.46

Weight (kDa)

5.69

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 18 - 103 3.2e-17 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 17
AccIII TCCGGA 1 cut(s) 108
AciI CCGC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 162
AgsI TTSAA 2 cut(s) 266, 337
AluBI AGCT 3 cut(s) 116, 236, 262
AluI AGCT 3 cut(s) 116, 236, 262
Ama87I CYCGRG 1 cut(s) 315
Aor13HI TCCGGA 1 cut(s) 108
ApoI RAATTY 1 cut(s) 162
AsuII TTCGAA 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 315
BauI CACGAG 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 233
BclI TGATCA 1 cut(s) 36
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
BmeT110I CYCGRG 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 296
BseAI TCCGGA 1 cut(s) 108
BseGI GGATG 1 cut(s) 105
BseJI GATNNNNATC 1 cut(s) 296
BseMII CTCAG 1 cut(s) 302
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 1 cut(s) 109
BsoBI CYCGRG 1 cut(s) 315
Bsp119I TTCGAA 1 cut(s) 140
Bsp13I TCCGGA 1 cut(s) 108
Bsp143I GATC 3 cut(s) 36, 121, 291
BspACI CCGC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 301
BspEI TCCGGA 1 cut(s) 108
BspHI TCATGA 1 cut(s) 166
BspMI ACCTGC 1 cut(s) 17
BspT104I TTCGAA 1 cut(s) 140
BssMI GATC 3 cut(s) 36, 121, 291
BssSI CACGAG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 117
Bst6I CTCTTC 2 cut(s) 63, 216
BstBI TTCGAA 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 3 cut(s) 39, 124, 294
BstMBI GATC 3 cut(s) 36, 121, 291
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 105
BveI ACCTGC 1 cut(s) 17
CciI TCATGA 1 cut(s) 166
CviAII CATG 2 cut(s) 167, 305
CviJI RGCY 5 cut(s) 116, 236, 250, 262, 341
CviKI_1 RGCY 5 cut(s) 116, 236, 250, 262, 341
DdeI CTNAG 1 cut(s) 288
DpnI GATC 3 cut(s) 38, 123, 293
DpnII GATC 3 cut(s) 36, 121, 291
Eam1104I CTCTTC 2 cut(s) 63, 216
EarI CTCTTC 2 cut(s) 63, 216
Eco88I CYCGRG 1 cut(s) 315
FaeI CATG 2 cut(s) 170, 308
FaiI YATR 2 cut(s) 168, 306
FatI CATG 2 cut(s) 166, 304
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 258
HapII CCGG 1 cut(s) 109
Hin1II CATG 2 cut(s) 170, 308
HinfI GANTC 2 cut(s) 286, 321
HpaII CCGG 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 4 cut(s) 109, 119, 167, 328
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 331
HpyCH4IV ACGT 2 cut(s) 48, 174
HpyCH4V TGCA 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 2 cut(s) 48, 174
Hsp92II CATG 2 cut(s) 170, 308
Kpn2I TCCGGA 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 3 cut(s) 36, 121, 291
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 3 cut(s) 22, 122, 222
MaeII ACGT 2 cut(s) 48, 174
MalI GATC 3 cut(s) 38, 123, 293
MboI GATC 3 cut(s) 36, 121, 291
MboII GAAGA 8 cut(s) 43, 77, 80, 199, 224, 233, 238, 278
MluCI AATT 2 cut(s) 75, 162
MlyI GAGTC 1 cut(s) 280
MnlI CCTC 3 cut(s) 202, 211, 312
MroI TCCGGA 1 cut(s) 108
MseI TTAA 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 18
NdeII GATC 3 cut(s) 36, 121, 291
NlaIII CATG 2 cut(s) 170, 308
NspV TTCGAA 1 cut(s) 140
PagI TCATGA 1 cut(s) 166
PcsI WCGNNNNNNNCGW 2 cut(s) 146, 281
PfeI GAWTC 1 cut(s) 321
PkrI GCNGC 1 cut(s) 283
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 236
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 3 cut(s) 36, 121, 291
SchI GAGTC 1 cut(s) 280
SetI ASST 6 cut(s) 11, 51, 118, 177, 238, 264
SfuI TTCGAA 1 cut(s) 140
Sse9I AATT 2 cut(s) 75, 162
SsiI CCGC 1 cut(s) 281
TaiI ACGT 2 cut(s) 51, 177
TaqI TCGA 2 cut(s) 140, 149
TasI AATT 2 cut(s) 75, 162
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TspDTI ATGAA 3 cut(s) 78, 146, 155
TspGWI ACGGA 1 cut(s) 290
XapI RAATTY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.