Rh3BG087000

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003379
Physical Location & Seq
Reverse (-)
6816230 .. 6816469
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG087000.1

Sequence Viewer

Length: 240 bp
ATGCTCAGGGGCAGCTCGAACTGGCCATTGGAGAAGAAATATCAGAATAAGAAGGAAGAGGATCGAGAGAAGAGAACCGGCGGTGCTTGGAACCCGGCATTTCAACCAGAAGACTTCCTTGATCAAGATGATAAAGCCACTAGTGATGGTCATGGTGCAGGTCCTTCGAAGAATCAAGAAGAAAACAAAAGGGAAGAAGATAAAGGAGGTGATGGTTTAGACCTGAAGCTTTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

79

Amino Acids

8.92

Weight (kDa)

4.97

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 11 - 68 9.5e-09 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 149
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 23
AgsI TTSAA 1 cut(s) 104
AhlI ACTAGT 1 cut(s) 140
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 2 cut(s) 15, 229
AluI AGCT 2 cut(s) 15, 229
AlwI GGATC 1 cut(s) 69
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 161
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 221
AsuII TTCGAA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 161
BalI TGGCCA 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 24
BccI CCATC 2 cut(s) 140, 206
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 1 cut(s) 95
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 149
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 78, 95
BsnI GGCC 1 cut(s) 25
Bsp119I TTCGAA 1 cut(s) 167
Bsp143I GATC 2 cut(s) 61, 121
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 92
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 1 cut(s) 69
BspT104I TTCGAA 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 77
BssMI GATC 2 cut(s) 61, 121
Bst6I CTCTTC 2 cut(s) 51, 65
BstBI TTCGAA 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 5
BstKTI GATC 2 cut(s) 64, 124
BstMBI GATC 2 cut(s) 61, 121
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 117
BsuRI GGCC 1 cut(s) 25
BveI ACCTGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 161
CviAII CATG 1 cut(s) 152
CviJI RGCY 4 cut(s) 15, 25, 137, 229
CviKI_1 RGCY 4 cut(s) 15, 25, 137, 229
DdeI CTNAG 1 cut(s) 5
DpnI GATC 2 cut(s) 63, 123
DpnII GATC 2 cut(s) 61, 121
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 2 cut(s) 51, 65
EarI CTCTTC 2 cut(s) 51, 65
Eco47I GGWCC 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 161
FaeI CATG 1 cut(s) 155
FaiI YATR 1 cut(s) 153
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FatI CATG 1 cut(s) 151
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 1 cut(s) 141
GluI GCNGC 1 cut(s) 13
HaeIII GGCC 1 cut(s) 25
HapII CCGG 2 cut(s) 78, 95
Hin1II CATG 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 1 cut(s) 172
HpaII CCGG 2 cut(s) 78, 95
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 3 cut(s) 65, 125, 176
HpyAV CCTTC 2 cut(s) 46, 174
HpyCH4V TGCA 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 5
Hsp92II CATG 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 61, 121
LpnPI CCDG 6 cut(s) 7, 91, 108, 120, 144, 236
Lsp1109I GCAGC 1 cut(s) 24
MaeI CTAG 1 cut(s) 141
MalI GATC 2 cut(s) 63, 123
MboI GATC 2 cut(s) 61, 121
MboII GAAGA 8 cut(s) 46, 68, 82, 122, 181, 191, 206, 209
MlsI TGGCCA 1 cut(s) 25
MluNI TGGCCA 1 cut(s) 25
MnlI CCTC 2 cut(s) 52, 200
Mox20I TGGCCA 1 cut(s) 25
MscI TGGCCA 1 cut(s) 25
Msp20I TGGCCA 1 cut(s) 25
MspI CCGG 2 cut(s) 78, 95
MspR9I CCNGG 1 cut(s) 95
NciI CCSGG 1 cut(s) 95
NdeII GATC 2 cut(s) 61, 121
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 92
NspV TTCGAA 1 cut(s) 167
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 14
PpuMI RGGWCCY 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 161
PspPPI RGGWCCY 1 cut(s) 161
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 2 cut(s) 61, 121
Sau96I GGNCC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 95
SetI ASST 5 cut(s) 17, 163, 211, 225, 231
SfcI CTRYAG 1 cut(s) 236
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 1 cut(s) 161
SpeI ACTAGT 1 cut(s) 140
SsiI CCGC 1 cut(s) 81
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 93
TaqI TCGA 3 cut(s) 17, 64, 167
TfiI GAWTC 1 cut(s) 172
TseI GCWGC 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 161
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.