RLG00000025184

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003379
Physical Location & Seq
Forward (+)
42861913 .. 42862547
635 bp
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UTR
Exon/CDS
Intron
RLM00000025184

Sequence Viewer

Length: 342 bp
ATGGAAGGAGACAGAAAGAAGAGGAAGATGGATTACGAAGAAGAGGATGAAAATGAAAAGATTGAGAAGTTCTTTGCTCTGATTAAGAGTACAAGGCAGGTGTGTGAGATACTCAGGGGCAGCTCGAACTGGCCATTGGAGAAGAAAGGTCAGAATAAGAAGGAAGAGGATCGAGAGAAGAGAACCACTTGGAACCCGGCATTTCAACCAGAAGACTTCCTTGATCAAGATGATAAAGCCACTAGTGACGGTCATGGTGCAGGTCCTTCGAAGAATCAAGAAGAAGACAAAAAGGAAGAAGATAAAGGAGGTGATGGTTTAGACCTGAAGCTTTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

114

Amino Acids

13.12

Weight (kDa)

4.9

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 13 - 104 1e-19 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 88
Acc36I ACCTGC 2 cut(s) 88, 251
AclWI GGATC 1 cut(s) 177
AcoI YGGCCR 1 cut(s) 131
AfaI GTAC 1 cut(s) 91
AgsI TTSAA 1 cut(s) 206
AhlI ACTAGT 1 cut(s) 242
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 2 cut(s) 123, 331
AluI AGCT 2 cut(s) 123, 331
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 1 cut(s) 177
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 323
AsuII TTCGAA 1 cut(s) 269
AvaII GGWCC 1 cut(s) 263
BalI TGGCCA 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 17, 49
BbsI GAAGAC 2 cut(s) 219, 291
BbvI GCAGC 1 cut(s) 132
BccI CCATC 2 cut(s) 22, 308
BcgI CGANNNNNNTGC 2 cut(s) 249, 283
BclI TGATCA 1 cut(s) 223
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 3
BcuI ACTAGT 1 cut(s) 242
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 338
BfuAI ACCTGC 2 cut(s) 88, 251
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 197
BpiI GAAGAC 2 cut(s) 219, 291
Bpu14I TTCGAA 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 132
BsgI GTGCAG 1 cut(s) 279
BshFI GGCC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 3
BsnI GGCC 1 cut(s) 133
Bsp119I TTCGAA 1 cut(s) 269
Bsp143I GATC 2 cut(s) 169, 223
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 194
BspMI ACCTGC 2 cut(s) 88, 251
BspPI GGATC 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 269
BsrI ACTGG 1 cut(s) 134
BssMI GATC 2 cut(s) 169, 223
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 4 cut(s) 14, 36, 159, 173
BstBI TTCGAA 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 2 cut(s) 172, 226
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 2 cut(s) 169, 223
BstSCI CCNGG 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 2 cut(s) 219, 291
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 52
BveI ACCTGC 2 cut(s) 88, 251
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 254
CviJI RGCY 4 cut(s) 123, 133, 239, 331
CviKI_1 RGCY 4 cut(s) 123, 133, 239, 331
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 113
DpnI GATC 2 cut(s) 171, 225
DpnII GATC 2 cut(s) 169, 223
EaeI YGGCCR 1 cut(s) 131
Eam1104I CTCTTC 4 cut(s) 14, 36, 159, 173
EarI CTCTTC 4 cut(s) 14, 36, 159, 173
Eco47I GGWCC 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 263
FaeI CATG 1 cut(s) 257
FaiI YATR 1 cut(s) 255
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 1 cut(s) 243
GluI GCNGC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 133
HapII CCGG 1 cut(s) 197
Hin1II CATG 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 1 cut(s) 274
HpaII CCGG 1 cut(s) 197
HphI GGTGA 1 cut(s) 323
Hpy188I TCNGA 2 cut(s) 81, 153
Hpy188III TCNNGA 3 cut(s) 173, 227, 278
HpyAV CCTTC 2 cut(s) 154, 276
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 260
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 1 cut(s) 257
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 169, 223
LpnPI CCDG 7 cut(s) 83, 100, 115, 210, 222, 246, 338
Lsp1109I GCAGC 1 cut(s) 132
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 245
MalI GATC 2 cut(s) 171, 225
MboI GATC 2 cut(s) 169, 223
MlsI TGGCCA 1 cut(s) 133
MluNI TGGCCA 1 cut(s) 133
MnlI CCTC 4 cut(s) 15, 37, 160, 302
Mox20I TGGCCA 1 cut(s) 133
MscI TGGCCA 1 cut(s) 133
MseI TTAA 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 133
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 197
NciI CCSGG 1 cut(s) 197
NdeII GATC 2 cut(s) 169, 223
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 245
NspV TTCGAA 1 cut(s) 269
PaqCI CACCTGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 274
PkrI GCNGC 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 263
PspPPI RGGWCCY 1 cut(s) 263
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 169, 223
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 197
SetI ASST 7 cut(s) 102, 125, 151, 265, 313, 327, 333
SfcI CTRYAG 1 cut(s) 338
SfuI TTCGAA 1 cut(s) 269
SinI GGWCC 1 cut(s) 263
SpeI ACTAGT 1 cut(s) 242
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 3 cut(s) 125, 172, 269
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 1 cut(s) 120
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 63, 69
VpaK11BI GGWCC 1 cut(s) 263
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.