Rw0G012320

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00549
OG0003379
Physical Location & Seq
Reverse (-)
150854 .. 151381
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G012320.1

Sequence Viewer

Length: 312 bp
ATGGAAGGAGAAAGAAAGAAAAGAAAGATGGAATATGAAGAAGAGGATGATGATGAGGAAAAGATTGAGAAATTCTTCGCTCTGATTAAGAGTACGAGACAGGTGCGTCACCTACTCGGGGGAAGCTCGAAATGGACCAAGGAGAAGAGAGATCAGAATAAGAAGGAAGATGATCAAGAGAAGGCTACCGCCGGCAGCGCTTGGAACCCAGAGTTCCAACCAGAAGACTTCCTTGATCAAGATGATAAGAGAGCTAAAGAAATGGAAGAAGATGAAGGTGGTAATGGTTTAGACCTGAAGCTTTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

103

Amino Acids

12.14

Weight (kDa)

4.75

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 14 - 88 4.1e-17 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 105
AciI CCGC 1 cut(s) 189
AcsI RAATTY 1 cut(s) 71
AfaI GTAC 1 cut(s) 94
AfeI AGCGCT 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 118
AluBI AGCT 3 cut(s) 126, 254, 301
AluI AGCT 3 cut(s) 126, 254, 301
Alw26I GTCTC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 116
Aor51HI AGCGCT 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 195
ApoI RAATTY 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 207
BccI CCATC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BclI TGATCA 2 cut(s) 172, 235
BcoDI GTCTC 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 308
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 91
BsoBI CYCGRG 1 cut(s) 116
Bsp143I GATC 3 cut(s) 151, 172, 235
BspACI CCGC 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 3 cut(s) 151, 172, 235
BssT1I CCWWGG 1 cut(s) 138
Bst6I CTCTTC 2 cut(s) 36, 140
BstC8I GCNNGC 1 cut(s) 193
BstF5I GGATG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 3 cut(s) 154, 175, 238
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 3 cut(s) 151, 172, 235
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 193
CfoI GCGC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 135
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 93
CviJI RGCY 4 cut(s) 126, 185, 254, 301
CviKI_1 RGCY 4 cut(s) 126, 185, 254, 301
CviQI GTAC 1 cut(s) 93
DpnI GATC 3 cut(s) 153, 174, 237
DpnII GATC 3 cut(s) 151, 172, 235
DrdI GACNNNNNNGTC 1 cut(s) 105
DseDI GACNNNNNNGTC 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 36, 140
EarI CTCTTC 2 cut(s) 36, 140
Eco130I CCWWGG 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 135
Eco47III AGCGCT 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaiI YATR 1 cut(s) 36
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FbaI TGATCA 2 cut(s) 172, 235
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 196
GlaI GCGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 196
HaeII RGCGCY 1 cut(s) 201
HapII CCGG 1 cut(s) 192
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 200
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 299
HpaII CCGG 1 cut(s) 192
HphI GGTGA 1 cut(s) 101
Hpy188I TCNGA 2 cut(s) 84, 156
Hpy188III TCNNGA 2 cut(s) 176, 239
HpyAV CCTTC 3 cut(s) 157, 175, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HspAI GCGC 1 cut(s) 198
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Ksp22I TGATCA 2 cut(s) 172, 235
Kzo9I GATC 3 cut(s) 151, 172, 235
LpnPI CCDG 5 cut(s) 86, 205, 222, 234, 308
Lsp1109I GCAGC 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 107
MalI GATC 3 cut(s) 153, 174, 237
MboI GATC 3 cut(s) 151, 172, 235
MboII GAAGA 8 cut(s) 50, 53, 67, 157, 179, 236, 278, 281
MluCI AATT 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 2 cut(s) 37, 49
MroNI GCCGGC 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 1 cut(s) 87
MspI CCGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 197
NaeI GCCGGC 1 cut(s) 193
NdeII GATC 3 cut(s) 151, 172, 235
NgoMIV GCCGGC 1 cut(s) 191
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 107
PdiI GCCGGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 135
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 3 cut(s) 151, 172, 235
Sau96I GGNCC 1 cut(s) 135
SetI ASST 7 cut(s) 105, 114, 128, 256, 280, 297, 303
SfcI CTRYAG 1 cut(s) 308
SinI GGWCC 1 cut(s) 135
Sse9I AATT 1 cut(s) 71
SsiI CCGC 1 cut(s) 189
StyI CCWWGG 1 cut(s) 138
TaqI TCGA 1 cut(s) 128
TasI AATT 1 cut(s) 71
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 51, 288
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.