Prupe.3G005700_v2.0.a1

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0003379
Physical Location & Seq
Reverse (-)
339932 .. 340831
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G005700.1

Sequence Viewer

Length: 465 bp
ATGGAGACCCATGAGAGCAAGAAGAGGAAGATGATCATTAGCAATGACGTTGATGCTGCTGCTGCTGAAGCTGATGATGAAGAAGAGAAGATTGAGAAGTTCTTTGCTCTTATCAACAACGTCCGGGAAGCTCGTCACCGATTGATGAATGGTTCGAATGTAATATTGAAACGGGAAGAAATTAATGACAACAGATCAAACAAGAAGAAGAAGAAAAAAGTGGAGGAAGAGGAAGAGAAGGTCATAGCTGACGTTTGGAAGCCATCATTTCAACCTGAAGATTTAATTGAAGAAGAGGCTCGTCATGAGTTCAAAATCCCACACGTGATATCTGGGATTAGCACTACTAATAATGCTCAAAGCAGAGGCTGCTGTAACACAGAAATTTGTAAACAAGATACTCATTCAAAGATCATCCCTACAAAAAATCACTTGAATCCGATAACAGTTGATGCAGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

155

Amino Acids

17.73

Weight (kDa)

5.91

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 384
AcuI CTGAAG 2 cut(s) 87, 297
AcvI CACGTG 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 6 cut(s) 169, 272, 290, 313, 408, 436
AluBI AGCT 3 cut(s) 71, 131, 248
AluI AGCT 3 cut(s) 71, 131, 248
AlwNI CAGNNNCTG 1 cut(s) 369
ApeKI GCWGC 4 cut(s) 56, 59, 62, 369
ApoI RAATTY 1 cut(s) 384
AseI ATTAAT 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 128
AsuII TTCGAA 1 cut(s) 155
BbrPI CACGTG 1 cut(s) 325
BbvI GCAGC 4 cut(s) 43, 46, 49, 356
BccI CCATC 1 cut(s) 271
BclI TGATCA 1 cut(s) 33
BcnI CCSGG 1 cut(s) 125
BisI GCNGC 4 cut(s) 57, 60, 63, 370
BlsI GCNGC 4 cut(s) 58, 61, 64, 371
Bme1390I CCNGG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 2 cut(s) 43, 442
Bpu14I TTCGAA 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 125
BsaAI YACGTR 1 cut(s) 325
Bse3DI GCAATG 1 cut(s) 49
BseGI GGATG 1 cut(s) 414
BseMI GCAATG 1 cut(s) 49
BseXI GCAGC 4 cut(s) 43, 46, 49, 356
BsiSI CCGG 1 cut(s) 124
Bsp119I TTCGAA 1 cut(s) 155
Bsp143I GATC 3 cut(s) 33, 194, 411
BspHI TCATGA 1 cut(s) 304
BspT104I TTCGAA 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 49
BssMI GATC 3 cut(s) 33, 194, 411
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 5 cut(s) 17, 78, 222, 228, 288
BstAPI GCANNNNNTGC 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 325
BstBI TTCGAA 1 cut(s) 155
BstF5I GGATG 1 cut(s) 414
BstKTI GATC 3 cut(s) 36, 197, 414
BstMBI GATC 3 cut(s) 33, 194, 411
BstMWI GCNNNNNNNGC 3 cut(s) 62, 68, 369
BstSCI CCNGG 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 43, 46, 49, 356
BtsCI GGATG 1 cut(s) 414
CaiI CAGNNNCTG 1 cut(s) 369
CciI TCATGA 1 cut(s) 304
CviAII CATG 2 cut(s) 11, 305
CviJI RGCY 6 cut(s) 71, 131, 248, 262, 299, 369
CviKI_1 RGCY 6 cut(s) 71, 131, 248, 262, 299, 369
DpnI GATC 3 cut(s) 35, 196, 413
DpnII GATC 3 cut(s) 33, 194, 411
Eam1104I CTCTTC 5 cut(s) 17, 78, 222, 228, 288
EarI CTCTTC 5 cut(s) 17, 78, 222, 228, 288
Eco32I GATATC 1 cut(s) 330
Eco57I CTGAAG 2 cut(s) 87, 297
Eco72I CACGTG 1 cut(s) 325
EcoRV GATATC 1 cut(s) 330
FaeI CATG 2 cut(s) 14, 308
FaiI YATR 3 cut(s) 12, 245, 306
FatI CATG 2 cut(s) 10, 304
FbaI TGATCA 1 cut(s) 33
Fnu4HI GCNGC 4 cut(s) 57, 60, 63, 370
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 4 cut(s) 57, 60, 63, 370
GluI GCNGC 4 cut(s) 57, 60, 63, 370
HapII CCGG 1 cut(s) 124
Hin1II CATG 2 cut(s) 14, 308
HinfI GANTC 1 cut(s) 436
HpaII CCGG 1 cut(s) 124
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 392
Hpy188I TCNGA 1 cut(s) 441
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 392
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 4 cut(s) 48, 120, 252, 324
HpyCH4V TGCA 1 cut(s) 455
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 68, 369
HpySE526I ACGT 4 cut(s) 48, 120, 252, 324
Hsp92II CATG 2 cut(s) 14, 308
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 3 cut(s) 33, 194, 411
LpnPI CCDG 3 cut(s) 137, 288, 318
Lsp1109I GCAGC 4 cut(s) 43, 46, 49, 356
LweI GCATC 2 cut(s) 43, 442
MaeII ACGT 4 cut(s) 48, 120, 252, 324
MaeIII GTNAC 2 cut(s) 134, 374
MalI GATC 3 cut(s) 35, 196, 413
MboI GATC 3 cut(s) 33, 194, 411
MluCI AATT 3 cut(s) 180, 285, 384
MnlI CCTC 5 cut(s) 18, 217, 223, 289, 359
MseI TTAA 2 cut(s) 183, 284
MspI CCGG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 62, 68, 369
NciI CCSGG 1 cut(s) 125
NdeII GATC 3 cut(s) 33, 194, 411
NlaIII CATG 2 cut(s) 14, 308
NmuCI GTSAC 1 cut(s) 134
NspV TTCGAA 1 cut(s) 155
PagI TCATGA 1 cut(s) 304
PfeI GAWTC 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 4 cut(s) 58, 61, 64, 371
PmaCI CACGTG 1 cut(s) 325
PmlI CACGTG 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 325
PshBI ATTAAT 1 cut(s) 183
PspCI CACGTG 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 369
SaqAI TTAA 2 cut(s) 183, 284
SatI GCNGC 4 cut(s) 57, 60, 63, 370
Sau3AI GATC 3 cut(s) 33, 194, 411
ScrFI CCNGG 1 cut(s) 125
SetI ASST 9 cut(s) 51, 73, 123, 133, 243, 250, 255, 277, 327
SfaNI GCATC 2 cut(s) 43, 442
SfuI TTCGAA 1 cut(s) 155
Sse9I AATT 3 cut(s) 180, 285, 384
SspI AATATT 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 4 cut(s) 51, 123, 255, 327
TaqI TCGA 1 cut(s) 155
TasI AATT 3 cut(s) 180, 285, 384
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 2 cut(s) 183, 284
Tru9I TTAA 2 cut(s) 183, 284
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 4 cut(s) 56, 59, 62, 369
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 93, 161
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.