Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

3136188 .. 3137684

Gene Structure 1497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCAGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGCCATTCAGGAAGAAGGGTTACATTCCACTCTCGACTTACCTGAGAACCTTCAAGGTCGGCGATTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAAACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTGCAGCAATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAAGAAGAAGAATGATGAGCTCAAGGCTGCAGCCAAAGCCAATGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCAGGATTCATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCGTACGATGTCGTCAACGATCTCAAGGGAGGCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

164

Amino Acids

18.65

Weight (kDa)

10.46

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21e	PF01157	1 - 101	2.7e-45	Ribosomal protein L21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	47, 210
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	3 cut(s)	45, 136, 257
AfaI	GTAC	2 cut(s)	181, 461
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	103, 224, 316
AjnI	CCWGG	1 cut(s)	409
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	2 cut(s)	319, 343
AluI	AGCT	2 cut(s)	319, 343
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	3 cut(s)	365, 382, 434
AlwI	GGATC	3 cut(s)	45, 136, 257
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	3 cut(s)	289, 350, 353
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	142, 380
AvaII	GGWCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	345
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	2 cut(s)	306, 320
BbvI	GCAGC	3 cut(s)	301, 337, 365
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	411
BcoDI	GTCTC	3 cut(s)	365, 382, 434
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	3 cut(s)	290, 351, 354
BlsI	GCNGC	3 cut(s)	291, 352, 355
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	411
Bpu10I	CCTNAGC	2 cut(s)	306, 320
BpuEI	CTTGAG	2 cut(s)	329, 464
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	172, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	172, 435
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	3 cut(s)	83, 297, 311
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	3 cut(s)	301, 337, 365
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	2 cut(s)	47, 210
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	52
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	345
BsiWI	CGTACG	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	3 cut(s)	365, 382, 434
BsnI	GGCC	1 cut(s)	52
Bso31I	GGTCTC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	37, 141, 249, 475
Bsp68I	TCGCGA	1 cut(s)	47
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	3 cut(s)	84, 298, 312
BspFNI	CGCG	2 cut(s)	47, 210
BspLI	GGNNCC	1 cut(s)	403
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	3 cut(s)	45, 136, 257
BspTNI	GGTCTC	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	172, 435
BssMI	GATC	4 cut(s)	37, 141, 249, 475
BssT1I	CCWWGG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	176, 445
Bst6I	CTCTTC	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	92, 306, 320
BstDSI	CCRYGG	1 cut(s)	172
BstFNI	CGCG	2 cut(s)	47, 210
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	4 cut(s)	40, 144, 252, 478
BstMAI	GTCTC	3 cut(s)	365, 382, 434
BstMBI	GATC	4 cut(s)	37, 141, 249, 475
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	280, 289, 359
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	409
BstSFI	CTRYAG	1 cut(s)	351
BstUI	CGCG	2 cut(s)	47, 210
BstV1I	GCAGC	3 cut(s)	301, 337, 365
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	172
BtuMI	TCGCGA	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	401
Csp6I	GTAC	2 cut(s)	180, 460
CviAII	CATG	4 cut(s)	14, 269, 284, 418
CviJI	RGCY	8 cut(s)	52, 319, 343, 350, 356, 362, 394, 489
CviKI_1	RGCY	8 cut(s)	52, 319, 343, 350, 356, 362, 394, 489
CviQI	GTAC	2 cut(s)	180, 460
DdeI	CTNAG	3 cut(s)	92, 306, 320
DpnI	GATC	4 cut(s)	39, 143, 251, 477
DpnII	GATC	4 cut(s)	37, 141, 249, 475
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	401
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	4 cut(s)	17, 272, 287, 421
FaiI	YATR	6 cut(s)	15, 155, 254, 270, 285, 419
FatI	CATG	4 cut(s)	13, 268, 283, 417
Fnu4HI	GCNGC	3 cut(s)	290, 351, 354
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	3 cut(s)	290, 351, 354
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	290, 351, 354
HaeIII	GGCC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	17, 272, 287, 421
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	2 cut(s)	229, 472
HindII	GTYRAC	2 cut(s)	229, 472
HinfI	GANTC	2 cut(s)	265, 414
HphI	GGTGA	2 cut(s)	142, 380
Hpy166II	GTNNAC	2 cut(s)	229, 472
Hpy188III	TCNNGA	5 cut(s)	46, 58, 82, 193, 297
Hpy8I	GTNNAC	2 cut(s)	229, 472
Hpy99I	CGWCG	2 cut(s)	122, 218
HpyAV	CCTTC	4 cut(s)	58, 109, 121, 419
HpyCH4III	ACNGT	2 cut(s)	176, 445
HpyCH4IV	ACGT	2 cut(s)	117, 198
HpyCH4V	TGCA	2 cut(s)	289, 353
HpyF10VI	GCNNNNNNNGC	3 cut(s)	280, 289, 359
HpyF3I	CTNAG	3 cut(s)	92, 306, 320
HpySE526I	ACGT	2 cut(s)	117, 198
Hsp92II	CATG	4 cut(s)	17, 272, 287, 421
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	4 cut(s)	37, 141, 249, 475
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	8 cut(s)	18, 43, 104, 168, 178, 232, 396, 423
Lsp1109I	GCAGC	3 cut(s)	301, 337, 365
MaeII	ACGT	2 cut(s)	117, 198
MaeIII	GTNAC	3 cut(s)	68, 199, 445
MalI	GATC	4 cut(s)	39, 143, 251, 477
MboI	GATC	4 cut(s)	37, 141, 249, 475
MboII	GAAGA	5 cut(s)	73, 271, 337, 340, 343
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	345
MnlI	CCTC	7 cut(s)	27, 42, 168, 255, 301, 315, 479
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	2 cut(s)	47, 210
MwoI	GCNNNNNNNGC	3 cut(s)	280, 289, 359
NdeII	GATC	4 cut(s)	37, 141, 249, 475
NlaIII	CATG	4 cut(s)	17, 272, 287, 421
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	2 cut(s)	199, 445
NruI	TCGCGA	1 cut(s)	47
NspI	RCATGY	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 184
PfeI	GAWTC	2 cut(s)	265, 414
Pfl23II	CGTACG	1 cut(s)	459
PkrI	GCNGC	3 cut(s)	291, 352, 355
PpuMI	RGGWCCY	1 cut(s)	401
Psp124BI	GAGCTC	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspLI	CGTACG	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	401
PspPPI	RGGWCCY	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	37
RruI	TCGCGA	1 cut(s)	47
RsaI	GTAC	2 cut(s)	181, 461
RsaNI	GTAC	2 cut(s)	180, 460
RseI	CAYNNNNRTG	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	345
SatI	GCNGC	3 cut(s)	290, 351, 354
Sau3AI	GATC	4 cut(s)	37, 141, 249, 475
Sau96I	GGNCC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	9 cut(s)	93, 101, 108, 120, 132, 201, 321, 345, 437
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	2 cut(s)	344, 479
SmoI	CTYRAG	2 cut(s)	344, 479
SsiI	CCGC	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	176, 445
TaiI	ACGT	2 cut(s)	120, 201
TaqI	TCGA	3 cut(s)	83, 120, 423
TfiI	GAWTC	2 cut(s)	265, 414
TseFI	GTSAC	2 cut(s)	199, 445
TseI	GCWGC	3 cut(s)	289, 350, 353
Tsp45I	GTSAC	2 cut(s)	199, 445
TspDTI	ATGAA	2 cut(s)	257, 406
VpaK11BI	GGWCC	1 cut(s)	401
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.