Rorug03G0169900

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
14365916 .. 14368355
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0169900.1

Sequence Viewer

Length: 1776 bp
ATGCTTCCTTCATTGTTGGAGTTGCACTTAGACATCAGTGAACTTGATGACCTCCCTCAATTTCTTCCATATGTGAACTTTACGTCACTTTTAGTCTTCGACCTCTCATACAACAACTTCAACTCTTCATTACCTCAATGGCTATTCAACATTAGTACCCTTGTGACAATTAATCTTGCTAATTGTCACCTCGCTGGCTCCATTAGGGAAACTTCATGGGTAAATCTTTGCAGCTTGCAGAGTTTAGATCTATTTGGCAATTCCATTAGTGGAGGAATGGAGGAGTTTCTTCATTCTTTGTCTGGGTGCAGTAACAGTATCATAGAAACATTGGACTTCAGTTACAATCAATTTAGTGGGAACTTGCCCGAGTCTCTGGGATCCCTGAAATATCTTGATGCTCTTTCTCTCACCCTTAATTCAATCTCAGGCCCACTCCCAATGTCAATCGGAAATCTGTCACATTTGTCAATGCTAGACCTTTCGTTCATCGTGATGAACAGCATCCCAGAGAGTATTGGACAGCTTGCAGAAATTAAATCTTTGACTTTGAATGTTGGACATGACTGGATTCCTCTCTTCAGTTTAAGTTCCATCACAATTAGCAACTGTCAATTAGGCCCCTCATTTCCTTTGTGGTTAAGAACTCAGAAAGAAGTTTCTTCAATAACACTCTCAAACAATGCAATTGTTGATGCAATACCGGATTGGTTCTGGACACTTGTGCAGAATGTATGGCTTCTAGATCTCTCCACAAATCAATTAACAGGGAAGCTTCCTCAATCAATCCATTCAAGTTCTGAGCTTGGAGTAATTGTTAATTTGGACTCCAACTGTTTGGAGGGCTCACTTCCGCTTTGGCGAAATGCAACGTCCCTTTATTTTGGAAACAACAGATTTTCTGGACAAATTCCCTTAAACATTGGCCAAGAGATGACAGCGTTGAAGACCCTGGATCTATCTAGGAACTATCTAAATGGTTCTATTTCACCTTCCATTAGTAGGATTAAGAATTTGACTGTTCTTGTTCTATCCAAAAATGATTTATCTCGAAACATCCCCTGGCTATGGAAGGGTTTGCAAAAACTGATTGTCATTGATCTGTCCGAAAACAAGCTGCAAGGAGCCAACATCTTCACTGGGAACATTCCTGAACAATTATGTCAACTCCCTCTTAAGGTTTTAGACCTTTCTCAGAATAACATACTAGGTTCTATCCCTAAATGTCTTGGCAACCTTGAAGTCATGAAAGATGTGGGTATCATGTTTAAGTTACCACCCTCCTTCTGGCAACCACCACCGAGTGTATATTTGGAATTAATTGTGAAGGGAAGACTATATGAATATTCTGATCTAATAGGTCTGCTGAGGATCATAGACCTATCAAGCAATAATCTATCAGGAGAAATACCAGAAGAGATAACAAACCTGTCAACCTTGTTTGCGTTGAATTTATCCCAAAACCAACTCATAGGAAGAATACCAGAGAGTATTGGAAGCTTGAGCCGCTTAGAATCTCTTGACCTCTCGAGTAACCATCTTTGTGGTCCAATTCCTCTGAGCATGACTTCTATGACTTCATTGAGCAGATTGAACTTATCATACAACAACTTGTCGGGGCCTATTCCATCAGCGAACCAATTCCAAACCTTCAATGACCCAAGCATATTTGAAGCAAACTTGGGACTTTGTGGGAATCCATTACCAATACAATGCTCGATCAGCTTTCGACGATGTGTAGTGAATGTGACTTGTACTATACATGATGAACTTTGA

Protein Analysis

591

Amino Acids

65.18

Weight (kDa)

4.79

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 124 - 186 1.3e-06 Leucine-rich repeat region
LRR_8 PF13855 456 - 514 1.3e-07 Leucine rich repeat
LRR_14 PF23598 456 - 533 1.2e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 854, 1507
AclWI GGATC 4 cut(s) 375, 388, 963, 1379
AcoI YGGCCR 1 cut(s) 925
AcsI RAATTY 3 cut(s) 909, 1012, 1450
AcuI CTGAAG 2 cut(s) 322, 565
AdeI CACNNNGTG 1 cut(s) 1304
AfaI GTAC 2 cut(s) 157, 1756
AfiI CCNNNNNNNGG 4 cut(s) 1002, 1068, 1177, 1287
AflII CTTAAG 1 cut(s) 1175
AjnI CCWGG 2 cut(s) 951, 1061
AluBI AGCT 7 cut(s) 234, 526, 775, 805, 1117, 1500, 1725
AluI AGCT 7 cut(s) 234, 526, 775, 805, 1117, 1500, 1725
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 4 cut(s) 375, 388, 963, 1379
Ama87I CYCGRG 2 cut(s) 368, 1528
AoxI GGCC 4 cut(s) 430, 619, 925, 1619
ApeKI GCWGC 2 cut(s) 231, 1117
ApoI RAATTY 3 cut(s) 909, 1012, 1450
AseI ATTAAT 2 cut(s) 171, 1319
Asp700I GAANNNNTTC 1 cut(s) 1640
AspS9I GGNCC 4 cut(s) 431, 620, 1547, 1619
AsuHPI GGTGA 3 cut(s) 179, 403, 981
AvaI CYCGRG 2 cut(s) 368, 1528
AvaII GGWCC 1 cut(s) 1547
BaeI ACNNNNGTAYC 2 cut(s) 139, 172
BalI TGGCCA 1 cut(s) 927
BamHI GGATCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 848
BbsI GAAGAC 3 cut(s) 88, 953, 1339
BbvCI CCTCAGC 1 cut(s) 1367
BbvI GCAGC 2 cut(s) 243, 1104
BccI CCATC 3 cut(s) 602, 1545, 1636
BciT130I CCWGG 2 cut(s) 953, 1063
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 4 cut(s) 476, 743, 963, 1208
BfrI CTTAAG 1 cut(s) 1175
BglII AGATCT 2 cut(s) 247, 745
BisI GCNGC 3 cut(s) 232, 1118, 1507
BlsI GCNGC 3 cut(s) 233, 1119, 1508
Bme1390I CCNGG 2 cut(s) 953, 1063
Bme18I GGWCC 1 cut(s) 1547
BmeT110I CYCGRG 2 cut(s) 368, 1528
BmgT120I GGNCC 4 cut(s) 431, 620, 1547, 1619
BmiI GGNNCC 5 cut(s) 199, 382, 622, 1126, 1620
BmrFI CCNGG 2 cut(s) 953, 1063
BmrI ACTGGG 1 cut(s) 1149
BmsI GCATC 3 cut(s) 388, 513, 685
BmuI ACTGGG 1 cut(s) 1149
BpiI GAAGAC 3 cut(s) 88, 953, 1339
Bpu10I CCTNAGC 1 cut(s) 1367
BpuEI CTTGAG 1 cut(s) 1522
BsaJI CCNNGG 2 cut(s) 951, 1061
BsaWI WCCGGW 1 cut(s) 703
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 4 cut(s) 1002, 1068, 1177, 1287
Bse1I ACTGG 2 cut(s) 572, 1144
BseBI CCWGG 2 cut(s) 953, 1063
BseDI CCNNGG 2 cut(s) 951, 1061
BseGI GGATG 2 cut(s) 504, 1056
BseLI CCNNNNNNNGG 4 cut(s) 1002, 1068, 1177, 1287
BseMII CTCAG 6 cut(s) 441, 662, 792, 1208, 1358, 1550
BseNI ACTGG 2 cut(s) 572, 1144
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 2 cut(s) 243, 1104
BsgI GTGCAG 2 cut(s) 328, 746
BshFI GGCC 4 cut(s) 432, 621, 927, 1621
BsiHKCI CYCGRG 2 cut(s) 368, 1528
BsiSI CCGG 1 cut(s) 704
BslFI GGGAC 2 cut(s) 859, 1698
BslI CCNNNNNNNGG 4 cut(s) 1002, 1068, 1177, 1287
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 2 cut(s) 859, 1698
BsnI GGCC 4 cut(s) 432, 621, 927, 1621
BsoBI CYCGRG 2 cut(s) 368, 1528
Bsp1286I GDGCHC 1 cut(s) 848
Bsp143I GATC 8 cut(s) 247, 380, 745, 955, 1099, 1351, 1371, 1719
BspACI CCGC 2 cut(s) 854, 1507
BspANI GGCC 4 cut(s) 432, 621, 927, 1621
BspCNI CTCAG 6 cut(s) 440, 661, 793, 1207, 1359, 1551
BspHI TCATGA 1 cut(s) 1245
BspLI GGNNCC 5 cut(s) 199, 382, 622, 1126, 1620
BspPI GGATC 4 cut(s) 375, 388, 963, 1379
BspTI CTTAAG 1 cut(s) 1175
BsrI ACTGG 2 cut(s) 572, 1144
BssECI CCNNGG 2 cut(s) 951, 1061
BssMI GATC 8 cut(s) 247, 380, 745, 955, 1099, 1351, 1371, 1719
Bst2UI CCWGG 2 cut(s) 953, 1063
Bst4CI ACNGT 4 cut(s) 317, 611, 836, 1021
Bst6I CTCTTC 3 cut(s) 130, 584, 1410
BstAFI CTTAAG 1 cut(s) 1175
BstC8I GCNNGC 3 cut(s) 196, 236, 528
BstDEI CTNAG 8 cut(s) 28, 427, 648, 801, 1194, 1367, 1510, 1559
BstF5I GGATG 2 cut(s) 504, 1056
BstKTI GATC 8 cut(s) 250, 383, 748, 958, 1102, 1354, 1374, 1722
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 8 cut(s) 247, 380, 745, 955, 1099, 1351, 1371, 1719
BstMWI GCNNNNNNNGC 2 cut(s) 1506, 1722
BstNI CCWGG 2 cut(s) 953, 1063
BstSCI CCNGG 2 cut(s) 951, 1061
BstV1I GCAGC 2 cut(s) 243, 1104
BstV2I GAAGAC 3 cut(s) 88, 953, 1339
BstX2I RGATCY 4 cut(s) 247, 380, 745, 955
BstXI CCANNNNNNTGG 2 cut(s) 838, 1544
BstYI RGATCY 4 cut(s) 247, 380, 745, 955
BsuRI GGCC 4 cut(s) 432, 621, 927, 1621
BtsCI GGATG 2 cut(s) 504, 1056
BtsIMutI CAGTG 2 cut(s) 43, 1137
Cac8I GCNNGC 3 cut(s) 196, 236, 528
CciI TCATGA 1 cut(s) 1245
Cfr13I GGNCC 4 cut(s) 431, 620, 1547, 1619
Csp6I GTAC 2 cut(s) 156, 1755
CviAII CATG 6 cut(s) 216, 563, 1246, 1264, 1564, 1763
CviQI GTAC 2 cut(s) 156, 1755
DdeI CTNAG 8 cut(s) 28, 427, 648, 801, 1194, 1367, 1510, 1559
DpnI GATC 8 cut(s) 249, 382, 747, 957, 1101, 1353, 1373, 1721
DpnII GATC 8 cut(s) 247, 380, 745, 955, 1099, 1351, 1371, 1719
DraIII CACNNNGTG 1 cut(s) 1304
EaeI YGGCCR 1 cut(s) 925
Eam1104I CTCTTC 3 cut(s) 130, 584, 1410
EarI CTCTTC 3 cut(s) 130, 584, 1410
Eco24I GRGCYC 1 cut(s) 848
Eco47I GGWCC 1 cut(s) 1547
Eco57I CTGAAG 2 cut(s) 322, 565
Eco88I CYCGRG 2 cut(s) 368, 1528
EcoO109I RGGNCCY 2 cut(s) 620, 1619
EcoRII CCWGG 2 cut(s) 951, 1061
EcoT38I GRGCYC 1 cut(s) 848
FaeI CATG 6 cut(s) 219, 566, 1249, 1267, 1567, 1766
FaqI GGGAC 2 cut(s) 859, 1698
FatI CATG 6 cut(s) 215, 562, 1245, 1263, 1563, 1762
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 3 cut(s) 232, 1118, 1507
FokI GGATG 2 cut(s) 491, 1043
FriOI GRGCYC 1 cut(s) 848
Fsp4HI GCNGC 3 cut(s) 232, 1118, 1507
FspBI CTAG 4 cut(s) 476, 743, 963, 1208
GluI GCNGC 3 cut(s) 232, 1118, 1507
HaeIII GGCC 4 cut(s) 432, 621, 927, 1621
HapII CCGG 1 cut(s) 704
Hin1II CATG 6 cut(s) 219, 566, 1249, 1267, 1567, 1766
HincII GTYRAC 2 cut(s) 1166, 1434
HindII GTYRAC 2 cut(s) 1166, 1434
HindIII AAGCTT 2 cut(s) 773, 1498
HinfI GANTC 5 cut(s) 371, 571, 827, 1514, 1696
HpaII CCGG 1 cut(s) 704
HphI GGTGA 3 cut(s) 179, 403, 981
Hpy166II GTNNAC 4 cut(s) 41, 76, 1166, 1434
Hpy188I TCNGA 7 cut(s) 452, 651, 802, 1108, 1197, 1351, 1560
Hpy8I GTNNAC 4 cut(s) 41, 76, 1166, 1434
Hpy99I CGWCG 1 cut(s) 1734
HpyAV CCTTC 6 cut(s) 18, 1002, 1066, 1294, 1321, 1660
HpyCH4III ACNGT 4 cut(s) 317, 611, 836, 1021
HpyCH4IV ACGT 2 cut(s) 83, 872
HpyF10VI GCNNNNNNNGC 2 cut(s) 1506, 1722
HpyF3I CTNAG 8 cut(s) 28, 427, 648, 801, 1194, 1367, 1510, 1559
HpySE526I ACGT 2 cut(s) 83, 872
Hsp92II CATG 6 cut(s) 219, 566, 1249, 1267, 1567, 1766
Kzo9I GATC 8 cut(s) 247, 380, 745, 955, 1099, 1351, 1371, 1719
LmnI GCTCC 2 cut(s) 203, 1124
Lsp1109I GCAGC 2 cut(s) 243, 1104
LweI GCATC 3 cut(s) 388, 513, 685
MaeI CTAG 4 cut(s) 476, 743, 963, 1208
MaeII ACGT 2 cut(s) 83, 872
MaeIII GTNAC 9 cut(s) 84, 163, 185, 311, 341, 459, 1272, 1532, 1747
MalI GATC 8 cut(s) 249, 382, 747, 957, 1101, 1353, 1373, 1721
MboI GATC 8 cut(s) 247, 380, 745, 955, 1099, 1351, 1371, 1719
MfeI CAATTG 1 cut(s) 687
MflI RGATCY 4 cut(s) 247, 380, 745, 955
MhlI GDGCHC 1 cut(s) 848
MlsI TGGCCA 1 cut(s) 927
MluNI TGGCCA 1 cut(s) 927
MlyI GAGTC 2 cut(s) 380, 821
MmeI TCCRAC 2 cut(s) 538, 855
Mox20I TGGCCA 1 cut(s) 927
MroXI GAANNNNTTC 1 cut(s) 1640
MscI TGGCCA 1 cut(s) 927
MslI CAYNNNNRTG 2 cut(s) 494, 1542
Msp20I TGGCCA 1 cut(s) 927
MspCI CTTAAG 1 cut(s) 1175
MspI CCGG 1 cut(s) 704
MspR9I CCNGG 2 cut(s) 953, 1063
MunI CAATTG 1 cut(s) 687
MvaI CCWGG 2 cut(s) 953, 1063
MwoI GCNNNNNNNGC 2 cut(s) 1506, 1722
NdeI CATATG 1 cut(s) 70
NdeII GATC 8 cut(s) 247, 380, 745, 955, 1099, 1351, 1371, 1719
NlaIII CATG 6 cut(s) 219, 566, 1249, 1267, 1567, 1766
NlaIV GGNNCC 5 cut(s) 199, 382, 622, 1126, 1620
NmuCI GTSAC 5 cut(s) 84, 163, 185, 459, 1747
PaeR7I CTCGAG 1 cut(s) 1528
PagI TCATGA 1 cut(s) 1245
PdmI GAANNNNTTC 1 cut(s) 1640
PfeI GAWTC 3 cut(s) 571, 1514, 1696
PkrI GCNGC 3 cut(s) 233, 1119, 1508
PleI GAGTC 2 cut(s) 379, 821
PpsI GAGTC 2 cut(s) 379, 821
PshBI ATTAAT 2 cut(s) 171, 1319
Psp6I CCWGG 2 cut(s) 951, 1061
PspGI CCWGG 2 cut(s) 951, 1061
PspN4I GGNNCC 5 cut(s) 199, 382, 622, 1126, 1620
PspPI GGNCC 4 cut(s) 431, 620, 1547, 1619
PsrI GAACNNNNNNTAC 2 cut(s) 1586, 1618
PsuI RGATCY 4 cut(s) 247, 380, 745, 955
RsaI GTAC 2 cut(s) 157, 1756
RsaNI GTAC 2 cut(s) 156, 1755
RseI CAYNNNNRTG 2 cut(s) 494, 1542
SatI GCNGC 3 cut(s) 232, 1118, 1507
Sau3AI GATC 8 cut(s) 247, 380, 745, 955, 1099, 1351, 1371, 1719
Sau96I GGNCC 4 cut(s) 431, 620, 1547, 1619
SchI GAGTC 2 cut(s) 380, 821
ScrFI CCNGG 2 cut(s) 953, 1063
SduI GDGCHC 1 cut(s) 848
SfaNI GCATC 3 cut(s) 388, 513, 685
Sfr274I CTCGAG 1 cut(s) 1528
SinI GGWCC 1 cut(s) 1547
SlaI CTCGAG 1 cut(s) 1528
SmiMI CAYNNNNRTG 2 cut(s) 494, 1542
SmlI CTYRAG 3 cut(s) 1175, 1501, 1528
SmoI CTYRAG 3 cut(s) 1175, 1501, 1528
SsiI CCGC 2 cut(s) 854, 1507
SspI AATATT 1 cut(s) 1346
SspMI CTAG 4 cut(s) 476, 743, 963, 1208
StyD4I CCNGG 2 cut(s) 951, 1061
TaaI ACNGT 4 cut(s) 317, 611, 836, 1021
TaiI ACGT 2 cut(s) 86, 875
TaqI TCGA 5 cut(s) 99, 1051, 1529, 1718, 1729
TatI WGTACW 1 cut(s) 1754
TauI GCSGC 1 cut(s) 1509
TfiI GAWTC 3 cut(s) 571, 1514, 1696
TscAI CASTG 2 cut(s) 43, 1144
TseFI GTSAC 5 cut(s) 84, 163, 185, 459, 1747
TseI GCWGC 2 cut(s) 231, 1117
Tsp45I GTSAC 5 cut(s) 84, 163, 185, 459, 1747
TspDTI ATGAA 8 cut(s) 117, 204, 281, 478, 512, 1262, 1356, 1569
TspRI CASTG 2 cut(s) 43, 1144
Vha464I CTTAAG 1 cut(s) 1175
VpaK11BI GGWCC 1 cut(s) 1547
VspI ATTAAT 2 cut(s) 171, 1319
XapI RAATTY 3 cut(s) 909, 1012, 1450
XbaI TCTAGA 1 cut(s) 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 1284
XhoI CTCGAG 1 cut(s) 1528
XmnI GAANNNNTTC 1 cut(s) 1640
XspI CTAG 4 cut(s) 476, 743, 963, 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.