60S ribosomal protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09590 AT1G09690 AT1G57660 AT1G57860 |
| fragaria_vesca | FvH4_4g22080 FvH4_4g22080 FvH4_6g21700 |
| malus_domestica | MD12G1053800.v1.1 MD14G1052100.v1.1 |
| prunus_persica | Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1 |
| pyrus_communis | pycom12g04680 pycom14g04340 |
| rosa_chinensis | RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341 |
| rosa_laevigata | RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614 |
| rosa_multiflora | Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860 |
| rosa_rugosa | Rorug03G0169900 Rorug04G0224800 |
| rosa_samantha | Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300 |
| rosa_wichuraiana | Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 854, 1507 |
| AclWI | GGATC | 4 cut(s) | 375, 388, 963, 1379 |
| AcoI | YGGCCR | 1 cut(s) | 925 |
| AcsI | RAATTY | 3 cut(s) | 909, 1012, 1450 |
| AcuI | CTGAAG | 2 cut(s) | 322, 565 |
| AdeI | CACNNNGTG | 1 cut(s) | 1304 |
| AfaI | GTAC | 2 cut(s) | 157, 1756 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1002, 1068, 1177, 1287 |
| AflII | CTTAAG | 1 cut(s) | 1175 |
| AjnI | CCWGG | 2 cut(s) | 951, 1061 |
| AluBI | AGCT | 7 cut(s) | 234, 526, 775, 805, 1117, 1500, 1725 |
| AluI | AGCT | 7 cut(s) | 234, 526, 775, 805, 1117, 1500, 1725 |
| Alw26I | GTCTC | 1 cut(s) | 378 |
| AlwI | GGATC | 4 cut(s) | 375, 388, 963, 1379 |
| Ama87I | CYCGRG | 2 cut(s) | 368, 1528 |
| AoxI | GGCC | 4 cut(s) | 430, 619, 925, 1619 |
| ApeKI | GCWGC | 2 cut(s) | 231, 1117 |
| ApoI | RAATTY | 3 cut(s) | 909, 1012, 1450 |
| AseI | ATTAAT | 2 cut(s) | 171, 1319 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1640 |
| AspS9I | GGNCC | 4 cut(s) | 431, 620, 1547, 1619 |
| AsuHPI | GGTGA | 3 cut(s) | 179, 403, 981 |
| AvaI | CYCGRG | 2 cut(s) | 368, 1528 |
| AvaII | GGWCC | 1 cut(s) | 1547 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 139, 172 |
| BalI | TGGCCA | 1 cut(s) | 927 |
| BamHI | GGATCC | 1 cut(s) | 380 |
| BanII | GRGCYC | 1 cut(s) | 848 |
| BbsI | GAAGAC | 3 cut(s) | 88, 953, 1339 |
| BbvCI | CCTCAGC | 1 cut(s) | 1367 |
| BbvI | GCAGC | 2 cut(s) | 243, 1104 |
| BccI | CCATC | 3 cut(s) | 602, 1545, 1636 |
| BciT130I | CCWGG | 2 cut(s) | 953, 1063 |
| BcoDI | GTCTC | 1 cut(s) | 378 |
| BfaI | CTAG | 4 cut(s) | 476, 743, 963, 1208 |
| BfrI | CTTAAG | 1 cut(s) | 1175 |
| BglII | AGATCT | 2 cut(s) | 247, 745 |
| BisI | GCNGC | 3 cut(s) | 232, 1118, 1507 |
| BlsI | GCNGC | 3 cut(s) | 233, 1119, 1508 |
| Bme1390I | CCNGG | 2 cut(s) | 953, 1063 |
| Bme18I | GGWCC | 1 cut(s) | 1547 |
| BmeT110I | CYCGRG | 2 cut(s) | 368, 1528 |
| BmgT120I | GGNCC | 4 cut(s) | 431, 620, 1547, 1619 |
| BmiI | GGNNCC | 5 cut(s) | 199, 382, 622, 1126, 1620 |
| BmrFI | CCNGG | 2 cut(s) | 953, 1063 |
| BmrI | ACTGGG | 1 cut(s) | 1149 |
| BmsI | GCATC | 3 cut(s) | 388, 513, 685 |
| BmuI | ACTGGG | 1 cut(s) | 1149 |
| BpiI | GAAGAC | 3 cut(s) | 88, 953, 1339 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1367 |
| BpuEI | CTTGAG | 1 cut(s) | 1522 |
| BsaJI | CCNNGG | 2 cut(s) | 951, 1061 |
| BsaWI | WCCGGW | 1 cut(s) | 703 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 801, 831 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1002, 1068, 1177, 1287 |
| Bse1I | ACTGG | 2 cut(s) | 572, 1144 |
| BseBI | CCWGG | 2 cut(s) | 953, 1063 |
| BseDI | CCNNGG | 2 cut(s) | 951, 1061 |
| BseGI | GGATG | 2 cut(s) | 504, 1056 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1002, 1068, 1177, 1287 |
| BseMII | CTCAG | 6 cut(s) | 441, 662, 792, 1208, 1358, 1550 |
| BseNI | ACTGG | 2 cut(s) | 572, 1144 |
| BseRI | GAGGAG | 1 cut(s) | 296 |
| BseXI | GCAGC | 2 cut(s) | 243, 1104 |
| BsgI | GTGCAG | 2 cut(s) | 328, 746 |
| BshFI | GGCC | 4 cut(s) | 432, 621, 927, 1621 |
| BsiHKCI | CYCGRG | 2 cut(s) | 368, 1528 |
| BsiSI | CCGG | 1 cut(s) | 704 |
| BslFI | GGGAC | 2 cut(s) | 859, 1698 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1002, 1068, 1177, 1287 |
| BsmAI | GTCTC | 1 cut(s) | 378 |
| BsmFI | GGGAC | 2 cut(s) | 859, 1698 |
| BsnI | GGCC | 4 cut(s) | 432, 621, 927, 1621 |
| BsoBI | CYCGRG | 2 cut(s) | 368, 1528 |
| Bsp1286I | GDGCHC | 1 cut(s) | 848 |
| Bsp143I | GATC | 8 cut(s) | 247, 380, 745, 955, 1099, 1351, 1371, 1719 |
| BspACI | CCGC | 2 cut(s) | 854, 1507 |
| BspANI | GGCC | 4 cut(s) | 432, 621, 927, 1621 |
| BspCNI | CTCAG | 6 cut(s) | 440, 661, 793, 1207, 1359, 1551 |
| BspHI | TCATGA | 1 cut(s) | 1245 |
| BspLI | GGNNCC | 5 cut(s) | 199, 382, 622, 1126, 1620 |
| BspPI | GGATC | 4 cut(s) | 375, 388, 963, 1379 |
| BspTI | CTTAAG | 1 cut(s) | 1175 |
| BsrI | ACTGG | 2 cut(s) | 572, 1144 |
| BssECI | CCNNGG | 2 cut(s) | 951, 1061 |
| BssMI | GATC | 8 cut(s) | 247, 380, 745, 955, 1099, 1351, 1371, 1719 |
| Bst2UI | CCWGG | 2 cut(s) | 953, 1063 |
| Bst4CI | ACNGT | 4 cut(s) | 317, 611, 836, 1021 |
| Bst6I | CTCTTC | 3 cut(s) | 130, 584, 1410 |
| BstAFI | CTTAAG | 1 cut(s) | 1175 |
| BstC8I | GCNNGC | 3 cut(s) | 196, 236, 528 |
| BstDEI | CTNAG | 8 cut(s) | 28, 427, 648, 801, 1194, 1367, 1510, 1559 |
| BstF5I | GGATG | 2 cut(s) | 504, 1056 |
| BstKTI | GATC | 8 cut(s) | 250, 383, 748, 958, 1102, 1354, 1374, 1722 |
| BstMAI | GTCTC | 1 cut(s) | 378 |
| BstMBI | GATC | 8 cut(s) | 247, 380, 745, 955, 1099, 1351, 1371, 1719 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1506, 1722 |
| BstNI | CCWGG | 2 cut(s) | 953, 1063 |
| BstSCI | CCNGG | 2 cut(s) | 951, 1061 |
| BstV1I | GCAGC | 2 cut(s) | 243, 1104 |
| BstV2I | GAAGAC | 3 cut(s) | 88, 953, 1339 |
| BstX2I | RGATCY | 4 cut(s) | 247, 380, 745, 955 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 838, 1544 |
| BstYI | RGATCY | 4 cut(s) | 247, 380, 745, 955 |
| BsuRI | GGCC | 4 cut(s) | 432, 621, 927, 1621 |
| BtsCI | GGATG | 2 cut(s) | 504, 1056 |
| BtsIMutI | CAGTG | 2 cut(s) | 43, 1137 |
| Cac8I | GCNNGC | 3 cut(s) | 196, 236, 528 |
| CciI | TCATGA | 1 cut(s) | 1245 |
| Cfr13I | GGNCC | 4 cut(s) | 431, 620, 1547, 1619 |
| Csp6I | GTAC | 2 cut(s) | 156, 1755 |
| CviAII | CATG | 6 cut(s) | 216, 563, 1246, 1264, 1564, 1763 |
| CviQI | GTAC | 2 cut(s) | 156, 1755 |
| DdeI | CTNAG | 8 cut(s) | 28, 427, 648, 801, 1194, 1367, 1510, 1559 |
| DpnI | GATC | 8 cut(s) | 249, 382, 747, 957, 1101, 1353, 1373, 1721 |
| DpnII | GATC | 8 cut(s) | 247, 380, 745, 955, 1099, 1351, 1371, 1719 |
| DraIII | CACNNNGTG | 1 cut(s) | 1304 |
| EaeI | YGGCCR | 1 cut(s) | 925 |
| Eam1104I | CTCTTC | 3 cut(s) | 130, 584, 1410 |
| EarI | CTCTTC | 3 cut(s) | 130, 584, 1410 |
| Eco24I | GRGCYC | 1 cut(s) | 848 |
| Eco47I | GGWCC | 1 cut(s) | 1547 |
| Eco57I | CTGAAG | 2 cut(s) | 322, 565 |
| Eco88I | CYCGRG | 2 cut(s) | 368, 1528 |
| EcoO109I | RGGNCCY | 2 cut(s) | 620, 1619 |
| EcoRII | CCWGG | 2 cut(s) | 951, 1061 |
| EcoT38I | GRGCYC | 1 cut(s) | 848 |
| FaeI | CATG | 6 cut(s) | 219, 566, 1249, 1267, 1567, 1766 |
| FaqI | GGGAC | 2 cut(s) | 859, 1698 |
| FatI | CATG | 6 cut(s) | 215, 562, 1245, 1263, 1563, 1762 |
| FauNDI | CATATG | 1 cut(s) | 70 |
| Fnu4HI | GCNGC | 3 cut(s) | 232, 1118, 1507 |
| FokI | GGATG | 2 cut(s) | 491, 1043 |
| FriOI | GRGCYC | 1 cut(s) | 848 |
| Fsp4HI | GCNGC | 3 cut(s) | 232, 1118, 1507 |
| FspBI | CTAG | 4 cut(s) | 476, 743, 963, 1208 |
| GluI | GCNGC | 3 cut(s) | 232, 1118, 1507 |
| HaeIII | GGCC | 4 cut(s) | 432, 621, 927, 1621 |
| HapII | CCGG | 1 cut(s) | 704 |
| Hin1II | CATG | 6 cut(s) | 219, 566, 1249, 1267, 1567, 1766 |
| HincII | GTYRAC | 2 cut(s) | 1166, 1434 |
| HindII | GTYRAC | 2 cut(s) | 1166, 1434 |
| HindIII | AAGCTT | 2 cut(s) | 773, 1498 |
| HinfI | GANTC | 5 cut(s) | 371, 571, 827, 1514, 1696 |
| HpaII | CCGG | 1 cut(s) | 704 |
| HphI | GGTGA | 3 cut(s) | 179, 403, 981 |
| Hpy166II | GTNNAC | 4 cut(s) | 41, 76, 1166, 1434 |
| Hpy188I | TCNGA | 7 cut(s) | 452, 651, 802, 1108, 1197, 1351, 1560 |
| Hpy8I | GTNNAC | 4 cut(s) | 41, 76, 1166, 1434 |
| Hpy99I | CGWCG | 1 cut(s) | 1734 |
| HpyAV | CCTTC | 6 cut(s) | 18, 1002, 1066, 1294, 1321, 1660 |
| HpyCH4III | ACNGT | 4 cut(s) | 317, 611, 836, 1021 |
| HpyCH4IV | ACGT | 2 cut(s) | 83, 872 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1506, 1722 |
| HpyF3I | CTNAG | 8 cut(s) | 28, 427, 648, 801, 1194, 1367, 1510, 1559 |
| HpySE526I | ACGT | 2 cut(s) | 83, 872 |
| Hsp92II | CATG | 6 cut(s) | 219, 566, 1249, 1267, 1567, 1766 |
| Kzo9I | GATC | 8 cut(s) | 247, 380, 745, 955, 1099, 1351, 1371, 1719 |
| LmnI | GCTCC | 2 cut(s) | 203, 1124 |
| Lsp1109I | GCAGC | 2 cut(s) | 243, 1104 |
| LweI | GCATC | 3 cut(s) | 388, 513, 685 |
| MaeI | CTAG | 4 cut(s) | 476, 743, 963, 1208 |
| MaeII | ACGT | 2 cut(s) | 83, 872 |
| MaeIII | GTNAC | 9 cut(s) | 84, 163, 185, 311, 341, 459, 1272, 1532, 1747 |
| MalI | GATC | 8 cut(s) | 249, 382, 747, 957, 1101, 1353, 1373, 1721 |
| MboI | GATC | 8 cut(s) | 247, 380, 745, 955, 1099, 1351, 1371, 1719 |
| MfeI | CAATTG | 1 cut(s) | 687 |
| MflI | RGATCY | 4 cut(s) | 247, 380, 745, 955 |
| MhlI | GDGCHC | 1 cut(s) | 848 |
| MlsI | TGGCCA | 1 cut(s) | 927 |
| MluNI | TGGCCA | 1 cut(s) | 927 |
| MlyI | GAGTC | 2 cut(s) | 380, 821 |
| MmeI | TCCRAC | 2 cut(s) | 538, 855 |
| Mox20I | TGGCCA | 1 cut(s) | 927 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1640 |
| MscI | TGGCCA | 1 cut(s) | 927 |
| MslI | CAYNNNNRTG | 2 cut(s) | 494, 1542 |
| Msp20I | TGGCCA | 1 cut(s) | 927 |
| MspCI | CTTAAG | 1 cut(s) | 1175 |
| MspI | CCGG | 1 cut(s) | 704 |
| MspR9I | CCNGG | 2 cut(s) | 953, 1063 |
| MunI | CAATTG | 1 cut(s) | 687 |
| MvaI | CCWGG | 2 cut(s) | 953, 1063 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1506, 1722 |
| NdeI | CATATG | 1 cut(s) | 70 |
| NdeII | GATC | 8 cut(s) | 247, 380, 745, 955, 1099, 1351, 1371, 1719 |
| NlaIII | CATG | 6 cut(s) | 219, 566, 1249, 1267, 1567, 1766 |
| NlaIV | GGNNCC | 5 cut(s) | 199, 382, 622, 1126, 1620 |
| NmuCI | GTSAC | 5 cut(s) | 84, 163, 185, 459, 1747 |
| PaeR7I | CTCGAG | 1 cut(s) | 1528 |
| PagI | TCATGA | 1 cut(s) | 1245 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1640 |
| PfeI | GAWTC | 3 cut(s) | 571, 1514, 1696 |
| PkrI | GCNGC | 3 cut(s) | 233, 1119, 1508 |
| PleI | GAGTC | 2 cut(s) | 379, 821 |
| PpsI | GAGTC | 2 cut(s) | 379, 821 |
| PshBI | ATTAAT | 2 cut(s) | 171, 1319 |
| Psp6I | CCWGG | 2 cut(s) | 951, 1061 |
| PspGI | CCWGG | 2 cut(s) | 951, 1061 |
| PspN4I | GGNNCC | 5 cut(s) | 199, 382, 622, 1126, 1620 |
| PspPI | GGNCC | 4 cut(s) | 431, 620, 1547, 1619 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1586, 1618 |
| PsuI | RGATCY | 4 cut(s) | 247, 380, 745, 955 |
| RsaI | GTAC | 2 cut(s) | 157, 1756 |
| RsaNI | GTAC | 2 cut(s) | 156, 1755 |
| RseI | CAYNNNNRTG | 2 cut(s) | 494, 1542 |
| SatI | GCNGC | 3 cut(s) | 232, 1118, 1507 |
| Sau3AI | GATC | 8 cut(s) | 247, 380, 745, 955, 1099, 1351, 1371, 1719 |
| Sau96I | GGNCC | 4 cut(s) | 431, 620, 1547, 1619 |
| SchI | GAGTC | 2 cut(s) | 380, 821 |
| ScrFI | CCNGG | 2 cut(s) | 953, 1063 |
| SduI | GDGCHC | 1 cut(s) | 848 |
| SfaNI | GCATC | 3 cut(s) | 388, 513, 685 |
| Sfr274I | CTCGAG | 1 cut(s) | 1528 |
| SinI | GGWCC | 1 cut(s) | 1547 |
| SlaI | CTCGAG | 1 cut(s) | 1528 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 494, 1542 |
| SmlI | CTYRAG | 3 cut(s) | 1175, 1501, 1528 |
| SmoI | CTYRAG | 3 cut(s) | 1175, 1501, 1528 |
| SsiI | CCGC | 2 cut(s) | 854, 1507 |
| SspI | AATATT | 1 cut(s) | 1346 |
| SspMI | CTAG | 4 cut(s) | 476, 743, 963, 1208 |
| StyD4I | CCNGG | 2 cut(s) | 951, 1061 |
| TaaI | ACNGT | 4 cut(s) | 317, 611, 836, 1021 |
| TaiI | ACGT | 2 cut(s) | 86, 875 |
| TaqI | TCGA | 5 cut(s) | 99, 1051, 1529, 1718, 1729 |
| TatI | WGTACW | 1 cut(s) | 1754 |
| TauI | GCSGC | 1 cut(s) | 1509 |
| TfiI | GAWTC | 3 cut(s) | 571, 1514, 1696 |
| TscAI | CASTG | 2 cut(s) | 43, 1144 |
| TseFI | GTSAC | 5 cut(s) | 84, 163, 185, 459, 1747 |
| TseI | GCWGC | 2 cut(s) | 231, 1117 |
| Tsp45I | GTSAC | 5 cut(s) | 84, 163, 185, 459, 1747 |
| TspDTI | ATGAA | 8 cut(s) | 117, 204, 281, 478, 512, 1262, 1356, 1569 |
| TspRI | CASTG | 2 cut(s) | 43, 1144 |
| Vha464I | CTTAAG | 1 cut(s) | 1175 |
| VpaK11BI | GGWCC | 1 cut(s) | 1547 |
| VspI | ATTAAT | 2 cut(s) | 171, 1319 |
| XapI | RAATTY | 3 cut(s) | 909, 1012, 1450 |
| XbaI | TCTAGA | 1 cut(s) | 742 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1284 |
| XhoI | CTCGAG | 1 cut(s) | 1528 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1640 |
| XspI | CTAG | 4 cut(s) | 476, 743, 963, 1208 |