Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8301713.1

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 302

Gene Structure 302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8301713.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 238 bp

gaagaggatccatgtgcgtgtggagcatgtgcagccatccaggtgcactgaagagttccgtttgaggaaggtgaagaatgatgagctgaaggcagaggccaagtctaagggtgaggtcatcagcaccaagagacagccaaagggtcccaagcccggtttcatggttgaaggtgcagttatggaaactgttactcccattccttatgatgttgtcaatgatcttaagggaggttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

78

Amino Acids

8.83

Weight (kDa)

9.56

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	2, 15
AcuI	CTGAAG	2 cut(s)	70, 108
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflII	CTTAAG	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	39
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	125
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	2 cut(s)	2, 15
AoxI	GGCC	1 cut(s)	97
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	144
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	83, 123
AvaII	GGWCC	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	48
BamHI	GGATCC	1 cut(s)	7
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	236
BfrI	CTTAAG	1 cut(s)	222
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	2 cut(s)	41, 154
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	3 cut(s)	9, 145, 146
BmrFI	CCNGG	2 cut(s)	41, 154
BpuMI	CCSGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	44
BsgI	GTGCAG	2 cut(s)	51, 193
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	7, 218
BspANI	GGCC	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	9, 145, 146
BspPI	GGATC	2 cut(s)	2, 15
BspTI	CTTAAG	1 cut(s)	222
BssMI	GATC	2 cut(s)	7, 218
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	46
BstAFI	CTTAAG	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	36
BstKTI	GATC	2 cut(s)	10, 221
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	2 cut(s)	7, 218
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 32
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	39, 152
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	144
CviAII	CATG	3 cut(s)	12, 27, 161
CviJI	RGCY	5 cut(s)	35, 86, 99, 137, 152
CviKI_1	RGCY	5 cut(s)	35, 86, 99, 137, 152
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	2 cut(s)	9, 220
DpnII	GATC	2 cut(s)	7, 218
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	144
Eco57I	CTGAAG	2 cut(s)	70, 108
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	15, 30, 164
FaiI	YATR	5 cut(s)	13, 28, 162, 180, 205
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	3 cut(s)	11, 26, 160
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	154
Hin1II	CATG	3 cut(s)	15, 30, 164
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	2 cut(s)	83, 123
Hpy166II	GTNNAC	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	62, 83, 162
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	3 cut(s)	32, 46, 174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 32
HpyF3I	CTNAG	1 cut(s)	106
Hsp92II	CATG	3 cut(s)	15, 30, 164
KflI	GGGWCCC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	7, 218
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	3 cut(s)	26, 53, 167
Lsp1109I	GCAGC	1 cut(s)	44
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	2 cut(s)	188, 231
MalI	GATC	2 cut(s)	9, 220
MboI	GATC	2 cut(s)	7, 218
MboII	GAAGA	3 cut(s)	14, 63, 86
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	48
MnlI	CCTC	4 cut(s)	58, 89, 107, 222
MseI	TTAA	1 cut(s)	223
MslI	CAYNNNNRTG	2 cut(s)	16, 41
MspCI	CTTAAG	1 cut(s)	222
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	41, 154
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	23, 32
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	2 cut(s)	7, 218
NlaIII	CATG	3 cut(s)	15, 30, 164
NlaIV	GGNNCC	3 cut(s)	9, 145, 146
NspI	RCATGY	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	3 cut(s)	9, 145, 146
PspPI	GGNCC	1 cut(s)	144
PspPPI	RGGWCCY	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	7
RseI	CAYNNNNRTG	2 cut(s)	16, 41
SaqAI	TTAA	1 cut(s)	223
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	7, 218
Sau96I	GGNCC	1 cut(s)	144
ScrFI	CCNGG	2 cut(s)	41, 154
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	6 cut(s)	45, 73, 88, 118, 173, 233
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	2 cut(s)	16, 41
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	39, 152
TaaI	ACNGT	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	223
Tru9I	TTAA	1 cut(s)	223
TscAI	CASTG	1 cut(s)	53
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	149
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	53
Vha464I	CTTAAG	1 cut(s)	222
VneI	GTGCAC	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	144
XceI	RCATGY	1 cut(s)	30
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.