Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Forward (+)

13606261 .. 13607290

Gene Structure 1030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCCTGCTGGACATGGTCTCCGATCACAAACCAGAGACTTGTTCTCTAGGGCCTTCAGGAAGAAGGGTTACATCCCACTCTCGACTTACCTGAAGACCTACCGGATCGGCGATTTCGTCGACGTCAAGGTCAATTGCGCCATCCACAAGGGTATGCCCCACAAGTTCTACCACGGCCGCACAGGTCGCGTCTGGAACGTCACCCATAGGATCCATGTGCTTGTGGAGCATGTGCAGCCATCAAGGTGCACTGAAGAGTTCCGTTTGAGGAAGGTGAAGAACGATCAGCTGAAGGCAGAGGCCAAGGCTAAGGTGAGGTCATCAGCACTAAGAGACAGCCAAAGGGTCCCAAGCCCGGTTTCATGGTTGAAGGACAATATGTTTTTAGGGAGCAAGAGTTTGGGAGAAGAAGTTAGTGGAGATGGTCGAGTAGTTAAAACAGAGGAGGTGTTTTGTACGTATTCGAACAGAGGAGTTTTGATAAGGAAAATGATTTGTGGCCTCAATGAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

171

Amino Acids

19.55

Weight (kDa)

10.1

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21e	PF01157	1 - 70	2.8e-29	Ribosomal protein L21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	3 cut(s)	113, 205, 218
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	4 cut(s)	40, 113, 273, 311
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	2 cut(s)	355, 508
AgsI	TTSAA	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	2 cut(s)	343, 375
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	3 cut(s)	23, 30, 327
Alw44I	GTGCAC	1 cut(s)	247
AlwI	GGATC	3 cut(s)	113, 205, 218
AoxI	GGCC	5 cut(s)	51, 175, 300, 499, 510
ApaLI	GTGCAC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	51, 346
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	3 cut(s)	193, 286, 325
AsuII	TTCGAA	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	210
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	3 cut(s)	149, 247, 416
BceAI	ACGGC	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	3 cut(s)	23, 30, 327
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	2 cut(s)	178, 236
BlsI	GCNGC	2 cut(s)	179, 237
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	51, 346
BmiI	GGNNCC	3 cut(s)	212, 347, 348
BmrFI	CCNGG	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	309
Bpu14I	TTCGAA	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	172, 303
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	5 cut(s)	33, 382, 396, 412, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 508
BseDI	CCNNGG	2 cut(s)	172, 303
BseGI	GGATG	2 cut(s)	72, 141
BseLI	CCNNNNNNNGG	2 cut(s)	355, 508
BseRI	GAGGAG	2 cut(s)	458, 486
BseSI	GKGCMC	1 cut(s)	251
BseX3I	CGGCCG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	5 cut(s)	53, 177, 302, 501, 512
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	103, 356
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	355, 508
BsmAI	GTCTC	3 cut(s)	23, 30, 327
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	5 cut(s)	53, 177, 302, 501, 512
Bso31I	GGTCTC	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	4 cut(s)	23, 105, 210, 283
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	5 cut(s)	53, 177, 302, 501, 512
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	3 cut(s)	212, 347, 348
BspPI	GGATC	3 cut(s)	113, 205, 218
BspT104I	TTCGAA	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	172, 303
BssMI	GATC	4 cut(s)	23, 105, 210, 283
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	249
BstACI	GRCGYC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	459
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	309, 329
BstDSI	CCRYGG	1 cut(s)	172
BstENI	CCTNNNNNAGG	1 cut(s)	506
BstF5I	GGATG	2 cut(s)	72, 141
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	4 cut(s)	26, 108, 213, 286
BstMAI	GTCTC	3 cut(s)	23, 30, 327
BstMBI	GATC	4 cut(s)	23, 105, 210, 283
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 226, 235
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	251
BstSNI	TACGTA	1 cut(s)	459
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BstZI	CGGCCG	1 cut(s)	175
BsuRI	GGCC	5 cut(s)	53, 177, 302, 501, 512
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	72, 141
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	51, 346
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	4 cut(s)	14, 215, 230, 363
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	2 cut(s)	309, 329
DpnI	GATC	4 cut(s)	25, 107, 212, 285
DpnII	GATC	4 cut(s)	23, 105, 210, 283
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	175
EagI	CGGCCG	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EclXI	CGGCCG	1 cut(s)	175
Eco105I	TACGTA	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	512
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	346
Eco52I	CGGCCG	1 cut(s)	175
Eco57I	CTGAAG	4 cut(s)	40, 113, 273, 311
EcoNI	CCTNNNNNAGG	1 cut(s)	506
EcoO109I	RGGNCCY	2 cut(s)	51, 346
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	4 cut(s)	17, 218, 233, 366
FaiI	YATR	7 cut(s)	15, 155, 207, 216, 231, 364, 380
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	4 cut(s)	13, 214, 229, 362
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	178, 236
FokI	GGATG	2 cut(s)	59, 128
Fsp4HI	GCNGC	2 cut(s)	178, 236
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	2 cut(s)	178, 236
HaeIII	GGCC	5 cut(s)	53, 177, 302, 501, 512
HapII	CCGG	2 cut(s)	103, 356
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	4 cut(s)	17, 218, 233, 366
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	103, 356
HphI	GGTGA	3 cut(s)	193, 286, 325
Hpy166II	GTNNAC	2 cut(s)	121, 249
Hpy188I	TCNGA	1 cut(s)	23
Hpy188III	TCNNGA	3 cut(s)	58, 82, 193
Hpy8I	GTNNAC	2 cut(s)	121, 249
Hpy99I	CGWCG	2 cut(s)	122, 125
HpyAV	CCTTC	5 cut(s)	58, 64, 265, 286, 364
HpyCH4IV	ACGT	3 cut(s)	123, 198, 458
HpyCH4V	TGCA	2 cut(s)	235, 249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 226, 235
HpyF3I	CTNAG	2 cut(s)	309, 329
HpySE526I	ACGT	3 cut(s)	123, 198, 458
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	17, 218, 233, 366
HspAI	GCGC	1 cut(s)	138
KflI	GGGWCCC	1 cut(s)	346
Kzo9I	GATC	4 cut(s)	23, 105, 210, 283
LmnI	GCTCC	2 cut(s)	226, 390
LpnPI	CCDG	8 cut(s)	18, 43, 46, 104, 116, 168, 178, 369
Lsp1109I	GCAGC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	3 cut(s)	123, 198, 458
MaeIII	GTNAC	2 cut(s)	68, 199
MalI	GATC	4 cut(s)	25, 107, 212, 285
MboI	GATC	4 cut(s)	23, 105, 210, 283
MboII	GAAGA	5 cut(s)	73, 106, 266, 289, 419
MfeI	CAATTG	1 cut(s)	133
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	1 cut(s)	133
MnlI	CCTC	8 cut(s)	261, 292, 309, 436, 439, 464, 502, 512
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	244
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	2 cut(s)	103, 356
MspR9I	CCNGG	1 cut(s)	356
MunI	CAATTG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	186, 226, 235
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	4 cut(s)	23, 105, 210, 283
NlaIII	CATG	4 cut(s)	17, 218, 233, 366
NlaIV	GGNNCC	3 cut(s)	212, 347, 348
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	233
NspV	TTCGAA	1 cut(s)	464
PceI	AGGCCT	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PflFI	GACNNNGTC	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	179, 237
Ppu21I	YACGTR	1 cut(s)	459
PpuMI	RGGWCCY	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	346
PspN4I	GGNNCC	3 cut(s)	212, 347, 348
PspPI	GGNCC	2 cut(s)	51, 346
PspPPI	RGGWCCY	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	210
PsyI	GACNNNGTC	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	244
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	2 cut(s)	178, 236
Sau3AI	GATC	4 cut(s)	23, 105, 210, 283
Sau96I	GGNCC	2 cut(s)	51, 346
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	251
SfuI	TTCGAA	1 cut(s)	464
SgrDI	CGTCGACG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	244
SnaBI	TACGTA	1 cut(s)	459
Sse9I	AATT	1 cut(s)	133
SseBI	AGGCCT	1 cut(s)	512
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	303
TaiI	ACGT	3 cut(s)	126, 201, 461
TaqI	TCGA	4 cut(s)	83, 120, 427, 464
TasI	AATT	1 cut(s)	133
TauI	GCSGC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	15
VneI	GTGCAC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	346
XagI	CCTNNNNNAGG	1 cut(s)	506
XceI	RCATGY	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	1 cut(s)	48
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.