Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

50277117 .. 50277611

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G024450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCCGGCCGGTCAGGGACTTCGATCTCGCACTCGGGACCTCTTCGCTCGCGGCTTCAGGAAGAAGGGTTACAACCCTCTCTCCACCTACCTGAAAACCTACCGGACCGGCCAGTACGTCGACGTCAAGGTTAACGGCGCCGTCCACAAGGGCATGCCCCACAAGTTCTACCACGGGCGCACGGGTCGGGTCTGTAACGTCACCAAGCGGGCCATCGGCCGCATCCACGTGCGAGTGGAGCACGTGCAGCCGTCGCGGTGCGAGGAGGAGTTGAAGGCGAGGAAGACTCGGAATGATGAGGTGAAGGCGGCGGCCAAGGCGCGTGGGGAAGCCATCAGCACCAAGAGGCAGCCGCAGGGGCCAAAGCCCGGGTTCATGGTGGAAGGGGCTTCTTTGGAAACCGTCACTCCTATTCCTTATGATGTCGTCAATGACCTCAAGGGAGGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

150

Amino Acids

16.8

Weight (kDa)

10.28

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21e	PF01157	1 - 79	1.1e-30	Ribosomal protein L21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	3 cut(s)	51, 256, 322
AciI	CCGC	7 cut(s)	51, 208, 220, 256, 308, 311, 353
AcoI	YGGCCR	4 cut(s)	6, 109, 217, 312
AcuI	CTGAAG	1 cut(s)	40
AcvI	CACGTG	2 cut(s)	229, 244
AcyI	GRCGYC	2 cut(s)	123, 138
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	274
Alw21I	GWGCWC	1 cut(s)	243
Ama87I	CYCGRG	2 cut(s)	33, 368
AoxI	GGCC	6 cut(s)	6, 109, 210, 217, 312, 359
ApeKI	GCWGC	2 cut(s)	247, 349
AspLEI	GCGC	3 cut(s)	140, 180, 322
AspS9I	GGNCC	4 cut(s)	37, 105, 210, 359
AsuC2I	CCSGG	2 cut(s)	369, 370
AsuHPI	GGTGA	2 cut(s)	193, 313
AvaI	CYCGRG	2 cut(s)	33, 368
AvaII	GGWCC	2 cut(s)	37, 105
BanI	GGYRCC	1 cut(s)	137
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbrPI	CACGTG	2 cut(s)	229, 244
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	259, 361
BccI	CCATC	2 cut(s)	221, 341
BceAI	ACGGC	3 cut(s)	125, 151, 235
BcnI	CCSGG	2 cut(s)	369, 370
BfoI	RGCGCY	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	358
BisI	GCNGC	7 cut(s)	52, 220, 248, 309, 312, 350, 353
BlsI	GCNGC	7 cut(s)	53, 221, 249, 310, 313, 351, 354
Bme1390I	CCNGG	2 cut(s)	369, 370
Bme18I	GGWCC	2 cut(s)	37, 105
BmeT110I	CYCGRG	2 cut(s)	33, 368
BmgT120I	GGNCC	4 cut(s)	37, 105, 210, 359
BmiI	GGNNCC	3 cut(s)	38, 139, 360
BmrFI	CCNGG	2 cut(s)	369, 370
BmsI	GCATC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	290
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	369, 370
BsaAI	YACGTR	2 cut(s)	229, 244
BsaHI	GRCGYC	2 cut(s)	123, 138
BsaJI	CCNNGG	3 cut(s)	172, 315, 368
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 391, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	3 cut(s)	4, 8, 107
Bse1I	ACTGG	1 cut(s)	112
BseDI	CCNNGG	3 cut(s)	172, 315, 368
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	2 cut(s)	278, 281
BseX3I	CGGCCG	2 cut(s)	6, 217
BseXI	GCAGC	2 cut(s)	259, 361
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	3 cut(s)	51, 256, 322
Bsh1285I	CGRYCG	2 cut(s)	9, 220
BshFI	GGCC	6 cut(s)	8, 111, 212, 219, 314, 361
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	2 cut(s)	9, 220
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	2 cut(s)	33, 368
BsiSI	CCGG	5 cut(s)	5, 9, 103, 108, 369
BslFI	GGGAC	2 cut(s)	30, 50
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmFI	GGGAC	2 cut(s)	30, 50
BsnI	GGCC	6 cut(s)	8, 111, 212, 219, 314, 361
BsoBI	CYCGRG	2 cut(s)	33, 368
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	7 cut(s)	51, 208, 220, 256, 308, 311, 353
BspANI	GGCC	6 cut(s)	8, 111, 212, 219, 314, 361
BspFNI	CGCG	3 cut(s)	51, 256, 322
BspLI	GGNNCC	3 cut(s)	38, 139, 360
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	3 cut(s)	4, 8, 107
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	3 cut(s)	4, 8, 107
BssECI	CCNNGG	3 cut(s)	172, 315, 368
BssMI	GATC	1 cut(s)	23
BssNI	GRCGYC	2 cut(s)	123, 138
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	2 cut(s)	123, 138
BstBAI	YACGTR	2 cut(s)	229, 244
BstC8I	GCNNGC	4 cut(s)	6, 49, 155, 210
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	222
BstFNI	CGCG	3 cut(s)	51, 256, 322
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	3 cut(s)	140, 180, 322
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstMCI	CGRYCG	2 cut(s)	9, 220
BstMWI	GCNNNNNNNGC	5 cut(s)	238, 247, 253, 317, 358
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	367, 368
BstUI	CGCG	3 cut(s)	51, 256, 322
BstV1I	GCAGC	2 cut(s)	259, 361
BstV2I	GAAGAC	1 cut(s)	290
BstZI	CGGCCG	2 cut(s)	6, 217
BsuRI	GGCC	6 cut(s)	8, 111, 212, 219, 314, 361
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	222
Cac8I	GCNNGC	4 cut(s)	6, 49, 155, 210
CfoI	GCGC	3 cut(s)	140, 180, 322
Cfr10I	RCCGGY	3 cut(s)	4, 8, 107
Cfr13I	GGNCC	4 cut(s)	37, 105, 210, 359
Cfr9I	CCCGGG	1 cut(s)	368
CpoI	CGGWCCG	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CspI	CGGWCCG	1 cut(s)	105
CviAII	CATG	2 cut(s)	154, 376
CviQI	GTAC	1 cut(s)	115
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
EaeI	YGGCCR	4 cut(s)	6, 109, 217, 312
EagI	CGGCCG	2 cut(s)	6, 217
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EclXI	CGGCCG	2 cut(s)	6, 217
Eco130I	CCWWGG	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	37, 105
Eco52I	CGGCCG	2 cut(s)	6, 217
Eco57I	CTGAAG	1 cut(s)	40
Eco72I	CACGTG	2 cut(s)	229, 244
Eco88I	CYCGRG	2 cut(s)	33, 368
EcoO109I	RGGNCCY	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	315
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	157, 379
FaiI	YATR	3 cut(s)	155, 377, 420
FaqI	GGGAC	2 cut(s)	30, 50
FatI	CATG	2 cut(s)	153, 375
FauI	CCCGC	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	7 cut(s)	52, 220, 248, 309, 312, 350, 353
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	7 cut(s)	52, 220, 248, 309, 312, 350, 353
GlaI	GCGC	3 cut(s)	139, 179, 321
GluI	GCNGC	7 cut(s)	52, 220, 248, 309, 312, 350, 353
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	6 cut(s)	8, 111, 212, 219, 314, 361
HapII	CCGG	5 cut(s)	5, 9, 103, 108, 369
HhaI	GCGC	3 cut(s)	140, 180, 322
Hin1I	GRCGYC	2 cut(s)	123, 138
Hin1II	CATG	2 cut(s)	157, 379
Hin6I	GCGC	3 cut(s)	138, 178, 320
HinP1I	GCGC	3 cut(s)	138, 178, 320
HincII	GTYRAC	2 cut(s)	121, 133
HindII	GTYRAC	2 cut(s)	121, 133
HinfI	GANTC	1 cut(s)	286
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	5 cut(s)	5, 9, 103, 108, 369
HphI	GGTGA	2 cut(s)	193, 313
Hpy166II	GTNNAC	3 cut(s)	121, 133, 145
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	35, 58
Hpy8I	GTNNAC	3 cut(s)	121, 133, 145
Hpy99I	CGWCG	3 cut(s)	122, 125, 256
HpyAV	CCTTC	4 cut(s)	58, 268, 298, 377
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	5 cut(s)	117, 123, 198, 228, 243
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	5 cut(s)	238, 247, 253, 317, 358
HpySE526I	ACGT	5 cut(s)	117, 123, 198, 228, 243
Hsp92I	GRCGYC	2 cut(s)	123, 138
Hsp92II	CATG	2 cut(s)	157, 379
HspAI	GCGC	3 cut(s)	138, 178, 320
KasI	GGCGCC	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	9 cut(s)	18, 22, 43, 104, 116, 121, 125, 341, 382
Lsp1109I	GCAGC	2 cut(s)	259, 361
LweI	GCATC	1 cut(s)	231
MaeII	ACGT	5 cut(s)	117, 123, 198, 228, 243
MaeIII	GTNAC	5 cut(s)	68, 194, 199, 403, 446
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	3 cut(s)	34, 73, 295
MhlI	GDGCHC	1 cut(s)	243
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	9 cut(s)	50, 87, 256, 259, 273, 292, 339, 437, 446
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	5 cut(s)	5, 9, 103, 108, 369
MspR9I	CCNGG	2 cut(s)	369, 370
MvnI	CGCG	3 cut(s)	51, 256, 322
MwoI	GCNNNNNNNGC	5 cut(s)	238, 247, 253, 317, 358
NaeI	GCCGGC	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	2 cut(s)	369, 370
NdeII	GATC	1 cut(s)	23
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	157, 379
NlaIV	GGNNCC	3 cut(s)	38, 139, 360
NmuCI	GTSAC	2 cut(s)	199, 403
NspI	RCATGY	1 cut(s)	157
PaeI	GCATGC	1 cut(s)	157
PdiI	GCCGGC	1 cut(s)	6
PkrI	GCNGC	7 cut(s)	53, 221, 249, 310, 313, 351, 354
PleI	GAGTC	1 cut(s)	280
PluTI	GGCGCC	1 cut(s)	141
PmaCI	CACGTG	2 cut(s)	229, 244
PmlI	CACGTG	2 cut(s)	229, 244
PpsI	GAGTC	1 cut(s)	280
Ppu21I	YACGTR	2 cut(s)	229, 244
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
PspCI	CACGTG	2 cut(s)	229, 244
PspN4I	GGNNCC	3 cut(s)	38, 139, 360
PspPI	GGNCC	4 cut(s)	37, 105, 210, 359
PspPPI	RGGWCCY	1 cut(s)	37
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	227
Rsr2I	CGGWCCG	1 cut(s)	105
RsrII	CGGWCCG	1 cut(s)	105
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	7 cut(s)	52, 220, 248, 309, 312, 350, 353
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	4 cut(s)	37, 105, 210, 359
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	369, 370
SduI	GDGCHC	1 cut(s)	243
SfaNI	GCATC	1 cut(s)	231
SfoI	GGCGCC	1 cut(s)	139
SgrDI	CGTCGACG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	37, 105
SmaI	CCCGGG	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SphI	GCATGC	1 cut(s)	157
SsiI	CCGC	7 cut(s)	51, 208, 220, 256, 308, 311, 353
SspDI	GGCGCC	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	367, 368
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	5 cut(s)	120, 126, 201, 231, 246
TaqI	TCGA	2 cut(s)	22, 120
TauI	GCSGC	5 cut(s)	54, 222, 311, 314, 355
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	199, 403
TseI	GCWGC	2 cut(s)	247, 349
Tsp45I	GTSAC	2 cut(s)	199, 403
TspDTI	ATGAA	1 cut(s)	364
TspMI	CCCGGG	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	37, 105
XceI	RCATGY	1 cut(s)	157
XmaI	CCCGGG	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	120
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.