Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

4526806 .. 4528263

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCCTGCTGGACACGGTCTCCGTTCCCGGACTCGTGATCTGTTCTCGAGGGCCTTCAGGAAGAAGGGGTACATCCCGCTCTCCACCTACCTCAAGACCTACAGGATCGGCGACCATGTCGATGTCAAGGTTAACGGCGCCGTCCACAAGGGTATGCCCCACAAGTTCTACCATGGCCGTACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATCGGTGTCGATCGATCAACAAGCAGGTCGGAAACAGAATCATCAGGAAGAGGATCGATCTGCGTGTGGAGCATGTGCAGCCATCAAGGTGCACCGAAGAATTCCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

108

Amino Acids

11.97

Weight (kDa)

10.79

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21e	PF01157	1 - 74	2.1e-33	Ribosomal protein L21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
AccB1I	GGYRCC	1 cut(s)	137
AccBSI	CCGCTC	1 cut(s)	79
AccII	CGCG	2 cut(s)	189, 210
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	2 cut(s)	113, 274
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	2 cut(s)	71, 181
AgeI	ACCGGT	1 cut(s)	182
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	23
Alw44I	GTGCAC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	113, 274
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	2 cut(s)	51, 175
ApaLI	GTGCAC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	291
ApoI	RAATTY	1 cut(s)	313
AsiGI	ACCGGT	1 cut(s)	182
AspLEI	GCGC	3 cut(s)	140, 210, 212
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	137
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BauI	CACGAG	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	2 cut(s)	221, 303
BceAI	ACGGC	3 cut(s)	125, 151, 162
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	228
BisI	GCNGC	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	28
Bsa29I	ATCGAT	2 cut(s)	226, 269
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	182
BseCI	ATCGAT	2 cut(s)	226, 269
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	72
BsePI	GCGCGC	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	303
BsgI	GTGCAG	1 cut(s)	310
Bsh1236I	CGCG	2 cut(s)	189, 210
Bsh1285I	CGRYCG	2 cut(s)	187, 226
BshFI	GGCC	2 cut(s)	53, 177
BshNI	GGYRCC	1 cut(s)	137
BshTI	ACCGGT	1 cut(s)	182
BshVI	ATCGAT	2 cut(s)	226, 269
BsiEI	CGRYCG	2 cut(s)	187, 226
BsiHKAI	GWGCWC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	28, 183
BsmAI	GTCTC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	53, 177
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	6 cut(s)	37, 105, 223, 227, 266, 270
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	53, 177
BspDI	ATCGAT	2 cut(s)	226, 269
BspFNI	CGCG	2 cut(s)	189, 210
BspLI	GGNNCC	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	113, 274
BspT107I	GGYRCC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	172
BssHII	GCGCGC	1 cut(s)	208
BssMI	GATC	6 cut(s)	37, 105, 223, 227, 266, 270
BssNI	GRCGYC	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	172
Bst2BI	CACGAG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	256
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	6, 210
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	2 cut(s)	189, 210
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	3 cut(s)	140, 210, 212
BstKTI	GATC	6 cut(s)	40, 108, 226, 230, 269, 273
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	6 cut(s)	37, 105, 223, 227, 266, 270
BstMCI	CGRYCG	2 cut(s)	187, 226
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 291
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	2 cut(s)	189, 210
BstV1I	GCAGC	1 cut(s)	303
Bsu15I	ATCGAT	2 cut(s)	226, 269
BsuRI	GGCC	2 cut(s)	53, 177
BsuTUI	ATCGAT	2 cut(s)	226, 269
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	6, 210
CfoI	GCGC	3 cut(s)	140, 210, 212
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	51
ClaI	ATCGAT	2 cut(s)	226, 269
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	70, 180
CspAI	ACCGGT	1 cut(s)	182
CviAII	CATG	3 cut(s)	116, 173, 286
CviJI	RGCY	3 cut(s)	53, 177, 294
CviKI_1	RGCY	3 cut(s)	53, 177, 294
CviQI	GTAC	2 cut(s)	70, 180
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	6 cut(s)	39, 107, 225, 229, 268, 272
DpnII	GATC	6 cut(s)	37, 105, 223, 227, 266, 270
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	172
Eco31I	GGTCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	172
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	3 cut(s)	119, 176, 289
FaiI	YATR	4 cut(s)	117, 155, 174, 287
FatI	CATG	3 cut(s)	115, 172, 285
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	292
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	292
GlaI	GCGC	3 cut(s)	139, 209, 211
GluI	GCNGC	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	53, 177
HapII	CCGG	2 cut(s)	28, 183
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	3 cut(s)	140, 210, 212
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	119, 176, 289
Hin6I	GCGC	3 cut(s)	138, 208, 210
HinP1I	GCGC	3 cut(s)	138, 208, 210
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	31, 251
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	2 cut(s)	28, 183
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	3 cut(s)	133, 145, 305
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	6 cut(s)	35, 46, 58, 94, 193, 258
Hpy8I	GTNNAC	3 cut(s)	133, 145, 305
HpyAV	CCTTC	2 cut(s)	58, 64
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	291, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 291
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	119, 176, 289
HspAI	GCGC	3 cut(s)	138, 208, 210
KasI	GGCGCC	1 cut(s)	137
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	6 cut(s)	37, 105, 223, 227, 266, 270
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	8 cut(s)	18, 41, 43, 88, 178, 196, 223, 243
Lsp1109I	GCAGC	1 cut(s)	303
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	6 cut(s)	39, 107, 225, 229, 268, 272
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	6 cut(s)	37, 105, 223, 227, 266, 270
MboII	GAAGA	3 cut(s)	73, 273, 322
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	1 cut(s)	313
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	3 cut(s)	42, 101, 257
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	120, 300
MspI	CCGG	2 cut(s)	28, 183
MspR9I	CCNGG	1 cut(s)	28
MvnI	CGCG	2 cut(s)	189, 210
MwoI	GCNNNNNNNGC	2 cut(s)	282, 291
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	6 cut(s)	37, 105, 223, 227, 266, 270
NlaIII	CATG	3 cut(s)	119, 176, 289
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	289
PaeR7I	CTCGAG	1 cut(s)	46
PauI	GCGCGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	251
PflFI	GACNNNGTC	2 cut(s)	15, 116
PfoI	TCCNGGA	1 cut(s)	26
PinAI	ACCGGT	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	293
Ple19I	CGATCG	1 cut(s)	226
PleI	GAGTC	1 cut(s)	25
PluTI	GGCGCC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	51
PsyI	GACNNNGTC	2 cut(s)	15, 116
PteI	GCGCGC	1 cut(s)	208
PvuI	CGATCG	1 cut(s)	226
RsaI	GTAC	2 cut(s)	71, 181
RsaNI	GTAC	2 cut(s)	70, 180
RseI	CAYNNNNRTG	2 cut(s)	120, 300
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	6 cut(s)	37, 105, 223, 227, 266, 270
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	7 cut(s)	89, 93, 101, 132, 201, 242, 304
SfcI	CTRYAG	1 cut(s)	100
SfoI	GGCGCC	1 cut(s)	139
Sfr274I	CTCGAG	1 cut(s)	46
SlaI	CTCGAG	1 cut(s)	46
SmiMI	CAYNNNNRTG	2 cut(s)	120, 300
SmlI	CTYRAG	2 cut(s)	46, 92
SmoI	CTYRAG	2 cut(s)	46, 92
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	1 cut(s)	77
SspDI	GGCGCC	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	5 cut(s)	47, 120, 222, 226, 269
TasI	AATT	1 cut(s)	313
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	291
Tsp45I	GTSAC	1 cut(s)	199
TspGWI	ACGGA	2 cut(s)	11, 307
Tth111I	GACNNNGTC	2 cut(s)	15, 116
VneI	GTGCAC	1 cut(s)	303
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	1 cut(s)	289
XhoI	CTCGAG	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.