Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

15242498 .. 15244041

Gene Structure 1544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCGGCTGGACATGGTCTCCGATCGCGAACCAGGGACTCGTTCTCTAGGGCCTTCAGGAAGAAGGGTTACATCCCTCTCTCCACTTACCTCAAGACCTACCGCATCGGCGACTTCGTCGACGTTAAGGTCAATGGTGCCATCCACAAGGGTATGCCCCACAAGTTCTACCATGGCCGTACCGGGCGTGTCTGGAACGTCACCAAGAGAGCCATCGGTGTTGAGATCAACAAGCAGGTGGGAAACAGGATTATCAGGAAGAGGATCCATGTGCGTGTGGAGCATGTGCAGCCATCAAGGTGCACTGAGGAGTTCCGTTTGAGGAAGGTCAAGAACGACCAGCTGAAGGCAGAGGCCAAGGCTAAGGGTGTAGTCATCAGCACCAAGAGACAGCCCAAGGGTCCCAAGCCCGGTTTCATGGTTGAAGGTGCAGTTATGGAAACTGTTACTCCCATTCCATATGATGTTGTCAATGATCTTAAGGGAGGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

165

Amino Acids

18.65

Weight (kDa)

10.62

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21e	PF01157	1 - 101	6.5e-45	Ribosomal protein L21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	226
AasI	GACNNNNNNGTC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	28
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	2 cut(s)	259, 272
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	2 cut(s)	40, 365
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	2 cut(s)	346, 410
AflII	CTTAAG	1 cut(s)	479
AgsI	TTSAA	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	2 cut(s)	23, 382
Alw44I	GTGCAC	1 cut(s)	301
AlwI	GGATC	2 cut(s)	259, 272
AoxI	GGCC	3 cut(s)	51, 175, 354
ApaLI	GTGCAC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	289
AspS9I	GGNCC	2 cut(s)	51, 401
AsuC2I	CCSGG	2 cut(s)	184, 411
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	137
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	3 cut(s)	149, 221, 301
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	34
BcnI	CCSGG	2 cut(s)	184, 411
BcoDI	GTCTC	2 cut(s)	23, 382
BfaI	CTAG	1 cut(s)	48
BfrI	CTTAAG	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
Bme1390I	CCNGG	3 cut(s)	34, 184, 411
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	51, 401
BmiI	GGNNCC	4 cut(s)	139, 266, 402, 403
BmrFI	CCNGG	3 cut(s)	34, 184, 411
BmsI	GCATC	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	2 cut(s)	184, 411
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	4 cut(s)	33, 172, 357, 396
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 433, 463
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 410
Bse118I	RCCGGY	1 cut(s)	4
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	4 cut(s)	33, 172, 357, 396
BseGI	GGATG	2 cut(s)	72, 141
BseLI	CCNNNNNNNGG	2 cut(s)	346, 410
BseMII	CTCAG	1 cut(s)	297
BseRI	GAGGAG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	301
BsgI	GTGCAG	2 cut(s)	308, 450
Bsh1236I	CGCG	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	3 cut(s)	53, 177, 356
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	5, 183, 411
BslFI	GGGAC	2 cut(s)	50, 387
BslI	CCNNNNNNNGG	2 cut(s)	346, 410
BsmAI	GTCTC	2 cut(s)	23, 382
BsmFI	GGGAC	2 cut(s)	50, 387
BsnI	GGCC	3 cut(s)	53, 177, 356
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	4 cut(s)	23, 225, 264, 475
Bsp19I	CCATGG	1 cut(s)	172
Bsp68I	TCGCGA	1 cut(s)	28
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	3 cut(s)	53, 177, 356
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	4 cut(s)	139, 266, 402, 403
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	2 cut(s)	259, 272
BspT107I	GGYRCC	1 cut(s)	137
BspTI	CTTAAG	1 cut(s)	479
BspTNI	GGTCTC	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	4 cut(s)	33, 172, 357, 396
BssMI	GATC	4 cut(s)	23, 225, 264, 475
BssT1I	CCWWGG	3 cut(s)	172, 357, 396
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	254
BstAFI	CTTAAG	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	306, 363
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	72, 141
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	4 cut(s)	26, 228, 267, 478
BstMAI	GTCTC	2 cut(s)	23, 382
BstMBI	GATC	4 cut(s)	23, 225, 264, 475
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 289
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	3 cut(s)	32, 182, 409
BstSLI	GKGCMC	1 cut(s)	305
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BsuRI	GGCC	3 cut(s)	53, 177, 356
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	72, 141
BtsIMutI	CAGTG	1 cut(s)	303
BtuMI	TCGCGA	1 cut(s)	28
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	51, 401
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	5 cut(s)	14, 173, 269, 284, 418
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	2 cut(s)	306, 363
DpnI	GATC	4 cut(s)	25, 227, 266, 477
DpnII	GATC	4 cut(s)	23, 225, 264, 475
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	3 cut(s)	172, 357, 396
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	2 cut(s)	40, 365
EcoO109I	RGGNCCY	2 cut(s)	51, 401
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	3 cut(s)	172, 357, 396
ErhI	CCWWGG	3 cut(s)	172, 357, 396
FaeI	CATG	5 cut(s)	17, 176, 272, 287, 421
FaiI	YATR	9 cut(s)	15, 155, 174, 270, 285, 419, 437, 460, 462
FaqI	GGGAC	2 cut(s)	50, 387
FatI	CATG	5 cut(s)	13, 172, 268, 283, 417
FauNDI	CATATG	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	2 cut(s)	59, 128
Fsp4HI	GCNGC	1 cut(s)	290
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	1 cut(s)	290
HaeIII	GGCC	3 cut(s)	53, 177, 356
HapII	CCGG	3 cut(s)	5, 183, 411
Hin1II	CATG	5 cut(s)	17, 176, 272, 287, 421
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	3 cut(s)	5, 183, 411
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	2 cut(s)	121, 303
Hpy188I	TCNGA	1 cut(s)	23
Hpy188III	TCNNGA	6 cut(s)	27, 58, 94, 193, 256, 331
Hpy8I	GTNNAC	2 cut(s)	121, 303
Hpy99I	CGWCG	2 cut(s)	122, 125
HpyAV	CCTTC	5 cut(s)	58, 64, 319, 340, 419
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	2 cut(s)	123, 198
HpyCH4V	TGCA	3 cut(s)	289, 303, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 289
HpyF3I	CTNAG	2 cut(s)	306, 363
HpySE526I	ACGT	2 cut(s)	123, 198
Hsp92II	CATG	5 cut(s)	17, 176, 272, 287, 421
KflI	GGGWCCC	1 cut(s)	401
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	4 cut(s)	23, 225, 264, 475
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	2 cut(s)	123, 198
MaeIII	GTNAC	3 cut(s)	68, 199, 445
MalI	GATC	4 cut(s)	25, 227, 266, 477
MboI	GATC	4 cut(s)	23, 225, 264, 475
MboII	GAAGA	2 cut(s)	73, 271
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	7 cut(s)	87, 101, 255, 301, 315, 346, 479
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	2 cut(s)	126, 480
MslI	CAYNNNNRTG	2 cut(s)	273, 298
MspA1I	CMGCKG	1 cut(s)	343
MspCI	CTTAAG	1 cut(s)	479
MspI	CCGG	3 cut(s)	5, 183, 411
MspR9I	CCNGG	3 cut(s)	34, 184, 411
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	280, 289
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	2 cut(s)	184, 411
NcoI	CCATGG	1 cut(s)	172
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	4 cut(s)	23, 225, 264, 475
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	5 cut(s)	17, 176, 272, 287, 421
NlaIV	GGNNCC	4 cut(s)	139, 266, 402, 403
NmuCI	GTSAC	1 cut(s)	199
NruI	TCGCGA	1 cut(s)	28
NspI	RCATGY	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	6
PflFI	GACNNNGTC	2 cut(s)	15, 116
PkrI	GCNGC	1 cut(s)	291
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PpuMI	RGGWCCY	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	4 cut(s)	139, 266, 402, 403
PspPI	GGNCC	2 cut(s)	51, 401
PspPPI	RGGWCCY	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	264
PsyI	GACNNNGTC	2 cut(s)	15, 116
PvuI	CGATCG	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	343
RruI	TCGCGA	1 cut(s)	28
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
RseI	CAYNNNNRTG	2 cut(s)	273, 298
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	126, 480
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	4 cut(s)	23, 225, 264, 475
Sau96I	GGNCC	2 cut(s)	51, 401
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	34, 184, 411
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	1 cut(s)	114
SgrDI	CGTCGACG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	273, 298
SmlI	CTYRAG	2 cut(s)	92, 479
SmoI	CTYRAG	2 cut(s)	92, 479
SsiI	CCGC	1 cut(s)	103
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	3 cut(s)	32, 182, 409
StyI	CCWWGG	3 cut(s)	172, 357, 396
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	2 cut(s)	126, 201
TaqI	TCGA	1 cut(s)	120
Tru1I	TTAA	2 cut(s)	126, 480
Tru9I	TTAA	2 cut(s)	126, 480
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	406
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	2 cut(s)	15, 116
Vha464I	CTTAAG	1 cut(s)	479
VneI	GTGCAC	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	401
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.