Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

26278629 .. 26280102

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG147000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCATCACACAGCTTCGGCAAACATCTCTGCACCAATTCGTGAAGGAGGTCTCTCACTCTTCTCGCAATTAAATCAGAAGAGGATCCATGGGCATGTAGAGCACGGGCAGCCATCAAGGTGCACTGAGGAGTTCCATGTGAGGAAGGTGAAGAACGATCAGCTGAAGGCAGAGGCCAAGGCTAAGGGTGAGGTCATCAACACCAAGAGACAGCCAAAGGGTCCCAAGCCTGGTTTCATGGTTGAAAGTGCAGTTATGGAAACTGTTACTCCCATTCCTTATGATGTCGTCAATGATCTTAAGGGAGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

104

Amino Acids

11.5

Weight (kDa)

9.37

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	79, 92
AcuI	CTGAAG	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	230
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	2 cut(s)	14, 163
AluI	AGCT	2 cut(s)	14, 163
Alw21I	GWGCWC	2 cut(s)	105, 125
Alw26I	GTCTC	2 cut(s)	56, 202
Alw44I	GTGCAC	1 cut(s)	121
AlwI	GGATC	2 cut(s)	79, 92
AoxI	GGCC	1 cut(s)	174
ApaLI	GTGCAC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	160, 200
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	125
BamHI	GGATCC	1 cut(s)	84
Bbv12I	GWGCWC	2 cut(s)	105, 125
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	56, 202
BfaI	CTAG	1 cut(s)	313
BfrI	CTTAAG	1 cut(s)	299
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	3 cut(s)	86, 222, 223
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	88, 177
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	88, 177
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	2 cut(s)	15, 270
BshFI	GGCC	1 cut(s)	176
BsiHKAI	GWGCWC	2 cut(s)	105, 125
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	2 cut(s)	56, 202
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	105, 125
Bsp143I	GATC	3 cut(s)	84, 157, 295
Bsp19I	CCATGG	1 cut(s)	88
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	3 cut(s)	86, 222, 223
BspPI	GGATC	2 cut(s)	79, 92
BspTI	CTTAAG	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	88, 177
BssMI	GATC	3 cut(s)	84, 157, 295
BssT1I	CCWWGG	2 cut(s)	88, 177
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	2 cut(s)	65, 74
BstAFI	CTTAAG	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	126, 183
BstDSI	CCRYGG	1 cut(s)	88
BstKTI	GATC	3 cut(s)	87, 160, 298
BstMAI	GTCTC	2 cut(s)	56, 202
BstMBI	GATC	3 cut(s)	84, 157, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 109
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	221
CviAII	CATG	4 cut(s)	89, 95, 137, 238
CviJI	RGCY	7 cut(s)	14, 112, 163, 176, 182, 214, 229
CviKI_1	RGCY	7 cut(s)	14, 112, 163, 176, 182, 214, 229
DdeI	CTNAG	2 cut(s)	126, 183
DpnI	GATC	3 cut(s)	86, 159, 297
DpnII	GATC	3 cut(s)	84, 157, 295
Eam1104I	CTCTTC	2 cut(s)	65, 74
EarI	CTCTTC	2 cut(s)	65, 74
Eco130I	CCWWGG	2 cut(s)	88, 177
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	88, 177
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	88, 177
FaeI	CATG	4 cut(s)	92, 98, 140, 241
FaiI	YATR	6 cut(s)	90, 96, 138, 239, 257, 282
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	4 cut(s)	88, 94, 136, 237
Fnu4HI	GCNGC	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	110
FspBI	CTAG	1 cut(s)	313
GluI	GCNGC	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	176
Hin1II	CATG	4 cut(s)	92, 98, 140, 241
HphI	GGTGA	2 cut(s)	160, 200
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	3 cut(s)	38, 139, 160
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	4 cut(s)	4, 32, 123, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 109
HpyF3I	CTNAG	2 cut(s)	126, 183
Hsp92II	CATG	4 cut(s)	92, 98, 140, 241
KflI	GGGWCCC	1 cut(s)	221
Kzo9I	GATC	3 cut(s)	84, 157, 295
LpnPI	CCDG	2 cut(s)	216, 243
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	313
MaeIII	GTNAC	2 cut(s)	265, 308
MalI	GATC	3 cut(s)	86, 159, 297
MboI	GATC	3 cut(s)	84, 157, 295
MboII	GAAGA	3 cut(s)	52, 91, 163
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	2 cut(s)	105, 125
MluCI	AATT	2 cut(s)	36, 68
MnlI	CCTC	7 cut(s)	41, 75, 121, 135, 166, 184, 299
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	71, 300
MslI	CAYNNNNRTG	2 cut(s)	93, 118
MspA1I	CMGCKG	1 cut(s)	163
MspCI	CTTAAG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	100, 109
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	3 cut(s)	84, 157, 295
NlaIII	CATG	4 cut(s)	92, 98, 140, 241
NlaIV	GGNNCC	3 cut(s)	86, 222, 223
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	111
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	86, 222, 223
PspPI	GGNCC	1 cut(s)	221
PspPPI	RGGWCCY	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	84
PvuII	CAGCTG	1 cut(s)	163
RseI	CAYNNNNRTG	2 cut(s)	93, 118
SaqAI	TTAA	2 cut(s)	71, 300
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	3 cut(s)	84, 157, 295
Sau96I	GGNCC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	2 cut(s)	105, 125
SetI	ASST	7 cut(s)	16, 52, 122, 150, 165, 195, 310
SfaNI	GCATC	1 cut(s)	13
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	93, 118
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	36, 68
SspMI	CTAG	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	2 cut(s)	88, 177
TaaI	ACNGT	1 cut(s)	265
TasI	AATT	2 cut(s)	36, 68
Tru1I	TTAA	2 cut(s)	71, 300
Tru9I	TTAA	2 cut(s)	71, 300
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	226
TspRI	CASTG	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	299
VneI	GTGCAC	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	221
XceI	RCATGY	1 cut(s)	98
XspI	CTAG	1 cut(s)	313
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.