Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Forward (+)

21355475 .. 21356637

Gene Structure 1163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G57660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTCGCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAGTTCTACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAACAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGAAAGAAGCAGAACGATGTGCTTAAGGCTGATGCTAAAGCCAGAGGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCGGGTTTCATGGTCGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGATGTTGTCAACGATCTCAAGGGTGGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

164

Amino Acids

18.71

Weight (kDa)

10.52

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21e	PF01157	1 - 101	2.7e-45	Ribosomal protein L21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	47
AciI	CCGC	1 cut(s)	8
AdeI	CACNNNGTG	1 cut(s)	19
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflII	CTTAAG	1 cut(s)	344
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	103, 224
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw26I	GTCTC	4 cut(s)	43, 365, 382, 434
AspS9I	GGNCC	1 cut(s)	401
AsuC2I	CCSGG	1 cut(s)	411
AvaII	GGWCC	1 cut(s)	401
BbvCI	CCTCAGC	1 cut(s)	306
BceAI	ACGGC	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	258
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	4 cut(s)	43, 365, 382, 434
BfrI	CTTAAG	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	258
BglII	AGATCT	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	198, 343
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	3 cut(s)	106, 297, 334
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	2 cut(s)	323, 381
Bsh1236I	CGCG	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	5, 410
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	4 cut(s)	43, 365, 382, 434
BsmFI	GGGAC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	37, 475
Bsp19I	CCATGG	1 cut(s)	172
Bsp68I	TCGCGA	1 cut(s)	47
BspACI	CCGC	1 cut(s)	8
BspCNI	CTCAG	3 cut(s)	105, 298, 333
BspFNI	CGCG	1 cut(s)	47
BspTI	CTTAAG	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	37, 475
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	294, 445
Bst6I	CTCTTC	1 cut(s)	254
BstAFI	CTTAAG	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	6, 210
BstDEI	CTNAG	4 cut(s)	92, 204, 306, 320
BstDSI	CCRYGG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	2 cut(s)	40, 478
BstMAI	GTCTC	4 cut(s)	43, 365, 382, 434
BstMBI	GATC	2 cut(s)	37, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNSI	RCATGY	2 cut(s)	272, 287
BstSCI	CCNGG	1 cut(s)	409
BstUI	CGCG	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	172
BtuMI	TCGCGA	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	6, 210
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	4 cut(s)	173, 269, 284, 418
CviJI	RGCY	4 cut(s)	140, 350, 362, 394
CviKI_1	RGCY	4 cut(s)	140, 350, 362, 394
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	4 cut(s)	92, 204, 306, 320
DpnI	GATC	2 cut(s)	39, 477
DpnII	GATC	2 cut(s)	37, 475
DraI	TTTAAA	1 cut(s)	316
DraIII	CACNNNGTG	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	172
Eco31I	GGTCTC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	4 cut(s)	176, 272, 287, 421
FaiI	YATR	9 cut(s)	72, 155, 162, 174, 254, 270, 285, 419, 431
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	4 cut(s)	172, 268, 283, 417
HapII	CCGG	2 cut(s)	5, 410
Hin1II	CATG	4 cut(s)	176, 272, 287, 421
HincII	GTYRAC	2 cut(s)	229, 472
HindII	GTYRAC	2 cut(s)	229, 472
HinfI	GANTC	1 cut(s)	249
HpaII	CCGG	2 cut(s)	5, 410
Hpy166II	GTNNAC	2 cut(s)	229, 472
Hpy188I	TCNGA	2 cut(s)	95, 323
Hpy188III	TCNNGA	3 cut(s)	46, 58, 193
Hpy8I	GTNNAC	2 cut(s)	229, 472
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	58, 109, 419
HpyCH4III	ACNGT	2 cut(s)	294, 445
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	4 cut(s)	92, 204, 306, 320
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	176, 272, 287, 421
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	37, 475
LmnI	GCTCC	2 cut(s)	137, 280
LpnPI	CCDG	6 cut(s)	18, 43, 168, 178, 376, 423
LweI	GCATC	2 cut(s)	198, 343
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	199, 445
MalI	GATC	2 cut(s)	39, 477
MboI	GATC	2 cut(s)	37, 475
MboII	GAAGA	2 cut(s)	73, 271
MflI	RGATCY	1 cut(s)	37
MnlI	CCTC	6 cut(s)	15, 101, 168, 255, 301, 359
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	3 cut(s)	132, 315, 345
MslI	CAYNNNNRTG	1 cut(s)	273
MspCI	CTTAAG	1 cut(s)	344
MspI	CCGG	2 cut(s)	5, 410
MspR9I	CCNGG	1 cut(s)	411
MssI	GTTTAAAC	1 cut(s)	316
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	280
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	1 cut(s)	411
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	2 cut(s)	37, 475
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	176, 272, 287, 421
NmuCI	GTSAC	2 cut(s)	199, 445
NruI	TCGCGA	1 cut(s)	47
NspI	RCATGY	2 cut(s)	272, 287
PciI	ACATGT	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	249
PmeI	GTTTAAAC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	401
PscI	ACATGT	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	401
PspPI	GGNCC	1 cut(s)	401
PspPPI	RGGWCCY	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	37
RruI	TCGCGA	1 cut(s)	47
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	132, 315, 345
Sau3AI	GATC	2 cut(s)	37, 475
Sau96I	GGNCC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	411
SetI	ASST	9 cut(s)	93, 101, 108, 120, 132, 142, 302, 403, 430
SfaNI	GCATC	2 cut(s)	198, 343
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	2 cut(s)	344, 479
SmoI	CTYRAG	2 cut(s)	344, 479
SsiI	CCGC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	294, 445
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	120, 423
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	3 cut(s)	132, 315, 345
Tru9I	TTAA	3 cut(s)	132, 315, 345
TseFI	GTSAC	2 cut(s)	199, 445
Tsp45I	GTSAC	2 cut(s)	199, 445
TspDTI	ATGAA	1 cut(s)	406
TspGWI	ACGGA	1 cut(s)	30
Vha464I	CTTAAG	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	401
XceI	RCATGY	2 cut(s)	272, 287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.