Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

56312327 .. 56312975

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG302800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCGGCCGGTCAGGGACTTCGATCTCGCACTCGGGACCTCTTCGCTCGAGGCTTCAGGAAGAAGGGTTACAACCCTCTCTCCACCTACCTGAAAACCTACCGGACCGGCCAGTACGTCGACGTCAAGGTTAACGGCGCAGTCCACAAGGGCATGCCCCACAAGTTCTACCACGGGCGCACGGGTCGGGTCTGCAACGTCACCAAGCGGGCCATCGGCGTCGAGATCAACAAGCTGGTCGGCAAACGGGTCATCCGCAAGCGCATCCACGTGCGTGTGGAGCACGTGCAGCCGTCGCGGTGCGAGGAGGAGTTGAAGGCGAGGAAGACTCGGAATGATGAGGTGAAGGCGGCGGCCAAGGCGCGTGGGGAAGCCATCAGCACCAAGAGGCAGCCGCAGGGGCCGAAGCCCGGGTTCATGGTGGAAGGGGCTTCTTTGGAAACCGTCACTCCTATTCCTTATGATGTCGTCAATGACCTCAAGGGTGGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

164

Amino Acids

18.43

Weight (kDa)

10.44

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21e	PF01157	1 - 101	1.7e-42	Ribosomal protein L21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	2 cut(s)	298, 364
AciI	CCGC	6 cut(s)	208, 256, 298, 350, 353, 395
AcoI	YGGCCR	3 cut(s)	6, 109, 354
AcuI	CTGAAG	1 cut(s)	40
AcvI	CACGTG	2 cut(s)	271, 286
AcyI	GRCGYC	2 cut(s)	123, 219
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	316
AleI	CACNNNNGTG	1 cut(s)	273
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw21I	GWGCWC	1 cut(s)	285
Ama87I	CYCGRG	3 cut(s)	33, 48, 410
AoxI	GGCC	5 cut(s)	6, 109, 210, 354, 401
ApeKI	GCWGC	2 cut(s)	289, 391
AspLEI	GCGC	4 cut(s)	140, 180, 264, 364
AspS9I	GGNCC	4 cut(s)	37, 105, 210, 401
AsuC2I	CCSGG	2 cut(s)	411, 412
AsuHPI	GGTGA	2 cut(s)	193, 355
AvaI	CYCGRG	3 cut(s)	33, 48, 410
AvaII	GGWCC	2 cut(s)	37, 105
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbrPI	CACGTG	2 cut(s)	271, 286
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	301, 403
BccI	CCATC	2 cut(s)	221, 383
BceAI	ACGGC	2 cut(s)	151, 277
BcnI	CCSGG	2 cut(s)	411, 412
BglI	GCCNNNNNGGC	1 cut(s)	400
BisI	GCNGC	5 cut(s)	290, 351, 354, 392, 395
BlsI	GCNGC	5 cut(s)	291, 352, 355, 393, 396
Bme1390I	CCNGG	2 cut(s)	411, 412
Bme18I	GGWCC	2 cut(s)	37, 105
BmeT110I	CYCGRG	3 cut(s)	33, 48, 410
BmgT120I	GGNCC	4 cut(s)	37, 105, 210, 401
BmiI	GGNNCC	2 cut(s)	38, 402
BmrFI	CCNGG	2 cut(s)	411, 412
BmsI	GCATC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	2 cut(s)	411, 412
BsaAI	YACGTR	2 cut(s)	271, 286
BsaHI	GRCGYC	2 cut(s)	123, 219
BsaJI	CCNNGG	3 cut(s)	172, 357, 410
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	3 cut(s)	4, 8, 107
Bse1I	ACTGG	1 cut(s)	112
BseDI	CCNNGG	3 cut(s)	172, 357, 410
BseGI	GGATG	2 cut(s)	252, 264
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	2 cut(s)	320, 323
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	301, 403
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	2 cut(s)	298, 364
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	5 cut(s)	8, 111, 212, 356, 403
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	3 cut(s)	33, 48, 410
BsiSI	CCGG	5 cut(s)	5, 9, 103, 108, 411
BslFI	GGGAC	2 cut(s)	30, 50
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmFI	GGGAC	2 cut(s)	30, 50
BsnI	GGCC	5 cut(s)	8, 111, 212, 356, 403
BsoBI	CYCGRG	3 cut(s)	33, 48, 410
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	23, 225
BspACI	CCGC	6 cut(s)	208, 256, 298, 350, 353, 395
BspANI	GGCC	5 cut(s)	8, 111, 212, 356, 403
BspFNI	CGCG	2 cut(s)	298, 364
BspLI	GGNNCC	2 cut(s)	38, 402
BsrFI	RCCGGY	3 cut(s)	4, 8, 107
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	3 cut(s)	4, 8, 107
BssECI	CCNNGG	3 cut(s)	172, 357, 410
BssMI	GATC	2 cut(s)	23, 225
BssNI	GRCGYC	2 cut(s)	123, 219
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	2 cut(s)	123, 219
BstBAI	YACGTR	2 cut(s)	271, 286
BstC8I	GCNNGC	4 cut(s)	6, 155, 210, 260
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	252, 264
BstFNI	CGCG	2 cut(s)	298, 364
BstHHI	GCGC	4 cut(s)	140, 180, 264, 364
BstKTI	GATC	2 cut(s)	26, 228
BstMBI	GATC	2 cut(s)	23, 225
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	280, 289, 295, 359, 400
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	409, 410
BstUI	CGCG	2 cut(s)	298, 364
BstV1I	GCAGC	2 cut(s)	301, 403
BstV2I	GAAGAC	1 cut(s)	332
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	5 cut(s)	8, 111, 212, 356, 403
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	252, 264
Cac8I	GCNNGC	4 cut(s)	6, 155, 210, 260
CfoI	GCGC	4 cut(s)	140, 180, 264, 364
Cfr10I	RCCGGY	3 cut(s)	4, 8, 107
Cfr13I	GGNCC	4 cut(s)	37, 105, 210, 401
Cfr9I	CCCGGG	1 cut(s)	410
CpoI	CGGWCCG	1 cut(s)	105
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CspI	CGGWCCG	1 cut(s)	105
CviAII	CATG	2 cut(s)	154, 418
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	2 cut(s)	25, 227
DpnII	GATC	2 cut(s)	23, 225
EaeI	YGGCCR	3 cut(s)	6, 109, 354
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	357
Eco47I	GGWCC	2 cut(s)	37, 105
Eco52I	CGGCCG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	40
Eco72I	CACGTG	2 cut(s)	271, 286
Eco88I	CYCGRG	3 cut(s)	33, 48, 410
EcoO109I	RGGNCCY	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	2 cut(s)	157, 421
FaiI	YATR	3 cut(s)	155, 419, 462
FaqI	GGGAC	2 cut(s)	30, 50
FatI	CATG	2 cut(s)	153, 417
FauI	CCCGC	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	5 cut(s)	290, 351, 354, 392, 395
FokI	GGATG	2 cut(s)	239, 251
Fsp4HI	GCNGC	5 cut(s)	290, 351, 354, 392, 395
GlaI	GCGC	4 cut(s)	139, 179, 263, 363
GluI	GCNGC	5 cut(s)	290, 351, 354, 392, 395
HaeIII	GGCC	5 cut(s)	8, 111, 212, 356, 403
HapII	CCGG	5 cut(s)	5, 9, 103, 108, 411
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	4 cut(s)	140, 180, 264, 364
Hin1I	GRCGYC	2 cut(s)	123, 219
Hin1II	CATG	2 cut(s)	157, 421
Hin6I	GCGC	4 cut(s)	138, 178, 262, 362
HinP1I	GCGC	4 cut(s)	138, 178, 262, 362
HincII	GTYRAC	2 cut(s)	121, 133
HindII	GTYRAC	2 cut(s)	121, 133
HinfI	GANTC	1 cut(s)	328
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	5 cut(s)	5, 9, 103, 108, 411
HphI	GGTGA	2 cut(s)	193, 355
Hpy166II	GTNNAC	3 cut(s)	121, 133, 145
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	3 cut(s)	35, 58, 223
Hpy8I	GTNNAC	3 cut(s)	121, 133, 145
Hpy99I	CGWCG	4 cut(s)	122, 125, 224, 298
HpyAV	CCTTC	4 cut(s)	58, 310, 340, 419
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	5 cut(s)	117, 123, 198, 270, 285
HpyCH4V	TGCA	2 cut(s)	195, 289
HpyF10VI	GCNNNNNNNGC	5 cut(s)	280, 289, 295, 359, 400
HpySE526I	ACGT	5 cut(s)	117, 123, 198, 270, 285
Hsp92I	GRCGYC	2 cut(s)	123, 219
Hsp92II	CATG	2 cut(s)	157, 421
HspAI	GCGC	4 cut(s)	138, 178, 262, 362
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	23, 225
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	2 cut(s)	301, 403
LweI	GCATC	1 cut(s)	273
MaeII	ACGT	5 cut(s)	117, 123, 198, 270, 285
MaeIII	GTNAC	4 cut(s)	68, 199, 445, 488
MalI	GATC	2 cut(s)	25, 227
MboI	GATC	2 cut(s)	23, 225
MboII	GAAGA	3 cut(s)	34, 73, 337
MhlI	GDGCHC	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	9 cut(s)	44, 50, 87, 298, 301, 315, 334, 381, 488
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	269, 273
MspI	CCGG	5 cut(s)	5, 9, 103, 108, 411
MspR9I	CCNGG	2 cut(s)	411, 412
MvnI	CGCG	2 cut(s)	298, 364
MwoI	GCNNNNNNNGC	5 cut(s)	280, 289, 295, 359, 400
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	2 cut(s)	411, 412
NdeII	GATC	2 cut(s)	23, 225
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	157, 421
NlaIV	GGNNCC	2 cut(s)	38, 402
NmuCI	GTSAC	2 cut(s)	199, 445
NspI	RCATGY	1 cut(s)	157
OliI	CACNNNNGTG	1 cut(s)	273
PaeI	GCATGC	1 cut(s)	157
PaeR7I	CTCGAG	1 cut(s)	48
PdiI	GCCGGC	1 cut(s)	6
PkrI	GCNGC	5 cut(s)	291, 352, 355, 393, 396
PleI	GAGTC	1 cut(s)	322
PmaCI	CACGTG	2 cut(s)	271, 286
PmlI	CACGTG	2 cut(s)	271, 286
PpsI	GAGTC	1 cut(s)	322
Ppu21I	YACGTR	2 cut(s)	271, 286
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
PspCI	CACGTG	2 cut(s)	271, 286
PspN4I	GGNNCC	2 cut(s)	38, 402
PspPI	GGNCC	4 cut(s)	37, 105, 210, 401
PspPPI	RGGWCCY	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	48
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	2 cut(s)	269, 273
Rsr2I	CGGWCCG	1 cut(s)	105
RsrII	CGGWCCG	1 cut(s)	105
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	5 cut(s)	290, 351, 354, 392, 395
Sau3AI	GATC	2 cut(s)	23, 225
Sau96I	GGNCC	4 cut(s)	37, 105, 210, 401
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	411, 412
SduI	GDGCHC	1 cut(s)	285
SfaNI	GCATC	1 cut(s)	273
Sfr274I	CTCGAG	1 cut(s)	48
SgrDI	CGTCGACG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	37, 105
SlaI	CTCGAG	1 cut(s)	48
SmaI	CCCGGG	1 cut(s)	412
SmiMI	CAYNNNNRTG	2 cut(s)	269, 273
SmlI	CTYRAG	2 cut(s)	48, 479
SmoI	CTYRAG	2 cut(s)	48, 479
SphI	GCATGC	1 cut(s)	157
SsiI	CCGC	6 cut(s)	208, 256, 298, 350, 353, 395
StyD4I	CCNGG	2 cut(s)	409, 410
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	5 cut(s)	120, 126, 201, 273, 288
TaqI	TCGA	4 cut(s)	22, 49, 120, 222
TauI	GCSGC	3 cut(s)	353, 356, 397
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	199, 445
TseI	GCWGC	2 cut(s)	289, 391
Tsp45I	GTSAC	2 cut(s)	199, 445
TspDTI	ATGAA	1 cut(s)	406
TspMI	CCCGGG	1 cut(s)	410
VpaK11BI	GGWCC	2 cut(s)	37, 105
XceI	RCATGY	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	48
XmaI	CCCGGG	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	120
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.