Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

74962835 .. 74965615

Gene Structure 2781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG541800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCCGGCTGGACATGGTCTCCGATCACGAACCAGAGACTTGTTCTCTAGGGCCTTCAGGAAGAAGGGTTACATCCCACTCTCGACTTACCTGAAGACCTACCGGATCGGCTATTTCGTCGACGTCAAGGTCAATGGCGCCATCCACAACGGTATGCCCCACAAGTTCTACCACGGCAGCACAGGTCTCGTCTGGAACGTCACCAAGAGGATCCATGTGCTTGTGGAGCATGTGCAGCCATCAAGGTGCACTGAAGAGTTCCGTTTGAGGAAGGTGAAGAACGATCAGCTGAAGGCAGAGGCCAAGGCTAAGGGTGAGGTCATCAGCACTAAGAGACAGCGAAAGGGTCCCAAGCCCGGTTTCATGGAAGGTGCAGTTATGGAAACTGTTACTCCGATTCCTTATGATGTTGTCAATGATCTTAAGGGAGATGTCATACATGCTCTCTGTCCCGGTTTGTGGTGCCAGGGTGTGAGGAATGATATGCTGCAGGAAAGAAAGGTCGGCGAATCTGTTTCACTGTTGGAGCGTTGTTTGGAATTGCCTCAGGAGTTCAAGGTGGCAAACATGACAAGAGATAGTCTGCATGCAGCGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

199

Amino Acids

22.56

Weight (kDa)

9.77

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21e	PF01157	1 - 70	2.4e-27	Ribosomal protein L21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	126
AccB1I	GGYRCC	2 cut(s)	137, 462
AccI	GTMKAC	1 cut(s)	120
AclWI	GGATC	3 cut(s)	113, 205, 218
AcuI	CTGAAG	4 cut(s)	40, 113, 273, 311
AcyI	GRCGYC	2 cut(s)	123, 138
AfiI	CCNNNNNNNGG	2 cut(s)	356, 459
AflII	CTTAAG	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	465
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	2 cut(s)	289, 597
AluI	AGCT	2 cut(s)	289, 597
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	4 cut(s)	23, 30, 191, 328
Alw44I	GTGCAC	1 cut(s)	247
AlwI	GGATC	3 cut(s)	113, 205, 218
AoxI	GGCC	2 cut(s)	51, 300
ApaLI	GTGCAC	1 cut(s)	247
ApeKI	GCWGC	4 cut(s)	177, 235, 487, 590
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	51, 347
AsuC2I	CCSGG	2 cut(s)	357, 453
AsuHPI	GGTGA	3 cut(s)	193, 286, 326
AvaII	GGWCC	1 cut(s)	347
AxyI	CCTNAGG	1 cut(s)	546
BaeGI	GKGCMC	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	210
BanI	GGYRCC	2 cut(s)	137, 462
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	3 cut(s)	189, 247, 474
BccI	CCATC	2 cut(s)	149, 247
BceAI	ACGGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	1 cut(s)	467
BcnI	CCSGG	2 cut(s)	357, 453
BcoDI	GTCTC	4 cut(s)	23, 30, 191, 328
BfaI	CTAG	2 cut(s)	48, 598
BfmI	CTRYAG	1 cut(s)	488
BfoI	RGCGCY	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	422
BisI	GCNGC	4 cut(s)	178, 236, 488, 591
BlsI	GCNGC	4 cut(s)	179, 237, 489, 592
Bme1390I	CCNGG	3 cut(s)	357, 453, 467
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	51, 347
BmiI	GGNNCC	5 cut(s)	139, 212, 348, 349, 464
BmrFI	CCNGG	3 cut(s)	357, 453, 467
BpiI	GAAGAC	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	309
BpuMI	CCSGG	2 cut(s)	357, 453
BsaHI	GRCGYC	2 cut(s)	123, 138
BsaI	GGTCTC	2 cut(s)	23, 191
BsaJI	CCNNGG	3 cut(s)	172, 303, 466
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 376, 406
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 459
Bse118I	RCCGGY	1 cut(s)	4
Bse21I	CCTNAGG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	3 cut(s)	172, 303, 466
BseGI	GGATG	2 cut(s)	72, 141
BseLI	CCNNNNNNNGG	2 cut(s)	356, 459
BseMII	CTCAG	1 cut(s)	560
BseSI	GKGCMC	1 cut(s)	251
BseXI	GCAGC	3 cut(s)	189, 247, 474
BsgI	GTGCAG	2 cut(s)	254, 393
BshFI	GGCC	2 cut(s)	53, 302
BshNI	GGYRCC	2 cut(s)	137, 462
BsiHKAI	GWGCWC	1 cut(s)	251
BsiSI	CCGG	4 cut(s)	5, 103, 357, 453
BslFI	GGGAC	2 cut(s)	333, 435
BslI	CCNNNNNNNGG	2 cut(s)	356, 459
BsmAI	GTCTC	4 cut(s)	23, 30, 191, 328
BsmFI	GGGAC	2 cut(s)	333, 435
BsnI	GGCC	2 cut(s)	53, 302
Bso31I	GGTCTC	2 cut(s)	23, 191
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	5 cut(s)	23, 105, 210, 283, 418
BspANI	GGCC	2 cut(s)	53, 302
BspCNI	CTCAG	1 cut(s)	559
BspLI	GGNNCC	5 cut(s)	139, 212, 348, 349, 464
BspMAI	CTGCAG	1 cut(s)	492
BspPI	GGATC	3 cut(s)	113, 205, 218
BspT107I	GGYRCC	2 cut(s)	137, 462
BspTI	CTTAAG	1 cut(s)	422
BspTNI	GGTCTC	2 cut(s)	23, 191
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	172, 303, 466
BssMI	GATC	5 cut(s)	23, 105, 210, 283, 418
BssNI	GRCGYC	2 cut(s)	123, 138
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	3 cut(s)	152, 388, 522
Bst6I	CTCTTC	1 cut(s)	249
BstACI	GRCGYC	2 cut(s)	123, 138
BstAFI	CTTAAG	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	6, 588, 595
BstDEI	CTNAG	3 cut(s)	309, 330, 546
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	72, 141
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	5 cut(s)	26, 108, 213, 286, 421
BstMAI	GTCTC	4 cut(s)	23, 30, 191, 328
BstMBI	GATC	5 cut(s)	23, 105, 210, 283, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 235
BstNI	CCWGG	1 cut(s)	467
BstNSI	RCATGY	3 cut(s)	233, 443, 590
BstSCI	CCNGG	3 cut(s)	355, 451, 465
BstSFI	CTRYAG	1 cut(s)	488
BstSLI	GKGCMC	1 cut(s)	251
BstV1I	GCAGC	3 cut(s)	189, 247, 474
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
Bsu36I	CCTNAGG	1 cut(s)	546
BsuRI	GGCC	2 cut(s)	53, 302
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	72, 141
BtsIMutI	CAGTG	2 cut(s)	249, 518
Cac8I	GCNNGC	3 cut(s)	6, 588, 595
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	51, 347
CviAII	CATG	7 cut(s)	14, 215, 230, 364, 440, 568, 587
CviJI	RGCY	9 cut(s)	8, 53, 111, 238, 289, 302, 308, 355, 597
CviKI_1	RGCY	9 cut(s)	8, 53, 111, 238, 289, 302, 308, 355, 597
DdeI	CTNAG	3 cut(s)	309, 330, 546
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	5 cut(s)	25, 107, 212, 285, 420
DpnII	GATC	5 cut(s)	23, 105, 210, 283, 418
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	303
Eco31I	GGTCTC	2 cut(s)	23, 191
Eco47I	GGWCC	1 cut(s)	347
Eco57I	CTGAAG	4 cut(s)	40, 113, 273, 311
Eco81I	CCTNAGG	1 cut(s)	546
EcoO109I	RGGNCCY	2 cut(s)	51, 347
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	7 cut(s)	17, 218, 233, 367, 443, 571, 590
FaqI	GGGAC	2 cut(s)	333, 435
FatI	CATG	7 cut(s)	13, 214, 229, 363, 439, 567, 586
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	4 cut(s)	178, 236, 488, 591
FokI	GGATG	2 cut(s)	59, 128
Fsp4HI	GCNGC	4 cut(s)	178, 236, 488, 591
FspBI	CTAG	2 cut(s)	48, 598
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	4 cut(s)	178, 236, 488, 591
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	53, 302
HapII	CCGG	4 cut(s)	5, 103, 357, 453
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	2 cut(s)	123, 138
Hin1II	CATG	7 cut(s)	17, 218, 233, 367, 443, 571, 590
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	397, 509
HpaII	CCGG	4 cut(s)	5, 103, 357, 453
HphI	GGTGA	3 cut(s)	193, 286, 326
Hpy166II	GTNNAC	2 cut(s)	121, 249
Hpy188I	TCNGA	2 cut(s)	23, 396
Hpy188III	TCNNGA	5 cut(s)	27, 58, 82, 193, 548
Hpy8I	GTNNAC	2 cut(s)	121, 249
Hpy99I	CGWCG	2 cut(s)	122, 125
HpyAV	CCTTC	5 cut(s)	58, 64, 265, 286, 362
HpyCH4III	ACNGT	3 cut(s)	152, 388, 522
HpyCH4IV	ACGT	2 cut(s)	123, 198
HpyCH4V	TGCA	6 cut(s)	235, 249, 374, 490, 586, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 235
HpyF3I	CTNAG	3 cut(s)	309, 330, 546
HpySE526I	ACGT	2 cut(s)	123, 198
Hsp92I	GRCGYC	2 cut(s)	123, 138
Hsp92II	CATG	7 cut(s)	17, 218, 233, 367, 443, 571, 590
HspAI	GCGC	1 cut(s)	138
KasI	GGCGCC	1 cut(s)	137
KflI	GGGWCCC	1 cut(s)	347
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	5 cut(s)	23, 105, 210, 283, 418
LmnI	GCTCC	2 cut(s)	226, 526
Lsp1109I	GCAGC	3 cut(s)	189, 247, 474
MaeI	CTAG	2 cut(s)	48, 598
MaeII	ACGT	2 cut(s)	123, 198
MaeIII	GTNAC	3 cut(s)	68, 199, 388
MalI	GATC	5 cut(s)	25, 107, 212, 285, 420
MboI	GATC	5 cut(s)	23, 105, 210, 283, 418
MboII	GAAGA	4 cut(s)	73, 106, 266, 289
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	1 cut(s)	539
Mly113I	GGCGCC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	6 cut(s)	201, 261, 292, 310, 468, 555
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	244
MspA1I	CMGCKG	1 cut(s)	289
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	4 cut(s)	5, 103, 357, 453
MspR9I	CCNGG	3 cut(s)	357, 453, 467
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	226, 235
NaeI	GCCGGC	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	2 cut(s)	357, 453
NdeII	GATC	5 cut(s)	23, 105, 210, 283, 418
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	7 cut(s)	17, 218, 233, 367, 443, 571, 590
NlaIV	GGNNCC	5 cut(s)	139, 212, 348, 349, 464
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	3 cut(s)	233, 443, 590
PaeI	GCATGC	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 195
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	397, 509
PflFI	GACNNNGTC	1 cut(s)	15
PkrI	GCNGC	4 cut(s)	179, 237, 489, 592
PluTI	GGCGCC	1 cut(s)	141
PpuMI	RGGWCCY	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	5 cut(s)	139, 212, 348, 349, 464
PspPI	GGNCC	2 cut(s)	51, 347
PspPPI	RGGWCCY	1 cut(s)	347
PstI	CTGCAG	1 cut(s)	492
PsuI	RGATCY	1 cut(s)	210
PsyI	GACNNNGTC	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	244
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	4 cut(s)	178, 236, 488, 591
Sau3AI	GATC	5 cut(s)	23, 105, 210, 283, 418
Sau96I	GGNCC	2 cut(s)	51, 347
ScrFI	CCNGG	3 cut(s)	357, 453, 467
SduI	GDGCHC	1 cut(s)	251
SfcI	CTRYAG	1 cut(s)	488
SfoI	GGCGCC	1 cut(s)	139
SgrDI	CGTCGACG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SphI	GCATGC	1 cut(s)	590
Sse9I	AATT	1 cut(s)	539
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	2 cut(s)	48, 598
StyD4I	CCNGG	3 cut(s)	355, 451, 465
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	3 cut(s)	152, 388, 522
TaiI	ACGT	2 cut(s)	126, 201
TaqI	TCGA	2 cut(s)	83, 120
TasI	AATT	1 cut(s)	539
TfiI	GAWTC	2 cut(s)	397, 509
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	2 cut(s)	256, 525
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	4 cut(s)	177, 235, 487, 590
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	352
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	256, 525
Tth111I	GACNNNGTC	1 cut(s)	15
Vha464I	CTTAAG	1 cut(s)	422
VneI	GTGCAC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	347
XceI	RCATGY	3 cut(s)	233, 443, 590
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	2 cut(s)	48, 598
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.