Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

71014059 .. 71014559

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021006

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCCGGCTGGACATGGTCTCCGATCACGAACCAAAGACTTGTTCTCTAGGGCCTTCAGGAAGAAGGGTTGCATCCCACTCTCGACTTACCTGAAGACCTACCGGATCGGCGATTTCGTCGACGTCAAGGTCAATGGCGCCATCCACAAGGGTATACCCCACAAGTTCTACCACGGCCTCACAGGTCGAGTCTGGAAGGTCACCAAGAGAGCCATCGGAGTTGAGATCAACAAGCAGGTGGGTAACCGAATTATCAGGAAGAGGATCCATGTGCATATGGAGCATGTGCAGCCACAGCCATCAAGGTGCACTGAAGAGTTCCGTTTGAGGAAGGTAGAGGCCAAGGCTAAGGGTGAGGTCATCAGCACTAAGAGACAGCCAAAAGGTCCGAAGCCCGATTTCATGGTTGAAGGTGCAGTTATGGAAACTATTACTCCCATTCCTTATGATGTCGTCAATGATCTTAAGGGAGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

160

Amino Acids

18.09

Weight (kDa)

10.26

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21e	PF01157	1 - 99	2.7e-41	Ribosomal protein L21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	226
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	2 cut(s)	120, 154
AclWI	GGATC	3 cut(s)	113, 259, 272
AcuI	CTGAAG	3 cut(s)	40, 113, 333
AcyI	GRCGYC	2 cut(s)	123, 138
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	1 cut(s)	410
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	2 cut(s)	23, 367
Alw44I	GTGCAC	1 cut(s)	307
AlwI	GGATC	3 cut(s)	113, 259, 272
AoxI	GGCC	3 cut(s)	51, 175, 339
ApaLI	GTGCAC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	51, 386
AsuHPI	GGTGA	2 cut(s)	193, 365
AvaII	GGWCC	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	311
BamHI	GGATCC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	3 cut(s)	149, 221, 307
BceAI	ACGGC	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	23, 367
BfaI	CTAG	2 cut(s)	48, 478
BfoI	RGCGCY	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	464
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	51, 386
BmiI	GGNNCC	2 cut(s)	139, 266
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	348
BsaHI	GRCGYC	2 cut(s)	123, 138
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	172, 342
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 418, 448
Bse118I	RCCGGY	1 cut(s)	4
BseDI	CCNNGG	2 cut(s)	172, 342
BseGI	GGATG	2 cut(s)	72, 141
BseSI	GKGCMC	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	301
BsgI	GTGCAG	2 cut(s)	308, 435
BshFI	GGCC	3 cut(s)	53, 177, 341
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	5, 103
BsmAI	GTCTC	2 cut(s)	23, 367
BsnI	GGCC	3 cut(s)	53, 177, 341
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	5 cut(s)	23, 105, 225, 264, 460
BspANI	GGCC	3 cut(s)	53, 177, 341
BspLI	GGNNCC	2 cut(s)	139, 266
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	3 cut(s)	113, 259, 272
BspT107I	GGYRCC	1 cut(s)	137
BspTI	CTTAAG	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	172, 342
BssMI	GATC	5 cut(s)	23, 105, 225, 264, 460
BssNAI	GTATAC	1 cut(s)	155
BssNI	GRCGYC	2 cut(s)	123, 138
BssT1I	CCWWGG	1 cut(s)	342
Bst1107I	GTATAC	1 cut(s)	155
Bst6I	CTCTTC	2 cut(s)	254, 309
BstACI	GRCGYC	2 cut(s)	123, 138
BstAFI	CTTAAG	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	348, 369
BstDSI	CCRYGG	1 cut(s)	172
BstEII	GGTNACC	2 cut(s)	199, 242
BstF5I	GGATG	2 cut(s)	72, 141
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	5 cut(s)	26, 108, 228, 267, 463
BstMAI	GTCTC	2 cut(s)	23, 367
BstMBI	GATC	5 cut(s)	23, 105, 225, 264, 460
BstMWI	GCNNNNNNNGC	3 cut(s)	280, 289, 295
BstNSI	RCATGY	1 cut(s)	287
BstPI	GGTNACC	2 cut(s)	199, 242
BstSLI	GKGCMC	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BstZ17I	GTATAC	1 cut(s)	155
BsuRI	GGCC	3 cut(s)	53, 177, 341
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	72, 141
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	51, 386
CviAII	CATG	4 cut(s)	14, 269, 284, 403
DdeI	CTNAG	2 cut(s)	348, 369
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	5 cut(s)	25, 107, 227, 266, 462
DpnII	GATC	5 cut(s)	23, 105, 225, 264, 460
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	2 cut(s)	254, 309
EarI	CTCTTC	2 cut(s)	254, 309
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	3 cut(s)	40, 113, 333
Eco91I	GGTNACC	2 cut(s)	199, 242
EcoO109I	RGGNCCY	1 cut(s)	51
EcoO65I	GGTNACC	2 cut(s)	199, 242
EcoT14I	CCWWGG	1 cut(s)	342
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	4 cut(s)	17, 272, 287, 406
FaiI	YATR	9 cut(s)	15, 155, 270, 276, 278, 285, 404, 422, 447
FatI	CATG	4 cut(s)	13, 268, 283, 402
FauNDI	CATATG	1 cut(s)	276
FblI	GTMKAC	2 cut(s)	120, 154
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	2 cut(s)	59, 128
Fsp4HI	GCNGC	1 cut(s)	290
FspBI	CTAG	2 cut(s)	48, 478
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	290
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	53, 177, 341
HapII	CCGG	2 cut(s)	5, 103
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	2 cut(s)	123, 138
Hin1II	CATG	4 cut(s)	17, 272, 287, 406
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	189
HpaII	CCGG	2 cut(s)	5, 103
HphI	GGTGA	2 cut(s)	193, 365
Hpy166II	GTNNAC	3 cut(s)	121, 155, 309
Hpy188I	TCNGA	3 cut(s)	23, 218, 390
Hpy188III	TCNNGA	5 cut(s)	27, 58, 82, 193, 256
Hpy8I	GTNNAC	3 cut(s)	121, 155, 309
Hpy99I	CGWCG	2 cut(s)	122, 125
HpyAV	CCTTC	5 cut(s)	58, 64, 190, 325, 404
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	5 cut(s)	72, 274, 289, 309, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	280, 289, 295
HpyF3I	CTNAG	2 cut(s)	348, 369
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	2 cut(s)	123, 138
Hsp92II	CATG	4 cut(s)	17, 272, 287, 406
HspAI	GCGC	1 cut(s)	138
KasI	GGCGCC	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	5 cut(s)	23, 105, 225, 264, 460
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	8 cut(s)	18, 43, 104, 116, 168, 178, 221, 241
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	48, 478
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	199, 242, 473
MalI	GATC	5 cut(s)	25, 107, 227, 266, 462
MboI	GATC	5 cut(s)	23, 105, 225, 264, 460
MboII	GAAGA	4 cut(s)	73, 106, 271, 326
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	1 cut(s)	249
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	198
MnlI	CCTC	6 cut(s)	188, 255, 321, 331, 349, 464
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	304
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	2 cut(s)	5, 103
MwoI	GCNNNNNNNGC	3 cut(s)	280, 289, 295
NaeI	GCCGGC	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	138
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	5 cut(s)	23, 105, 225, 264, 460
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	17, 272, 287, 406
NlaIV	GGNNCC	2 cut(s)	139, 266
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	6
PflFI	GACNNNGTC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	291
PleI	GAGTC	1 cut(s)	197
PluTI	GGCGCC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	197
PspEI	GGTNACC	2 cut(s)	199, 242
PspN4I	GGNNCC	2 cut(s)	139, 266
PspPI	GGNCC	2 cut(s)	51, 386
PsuI	RGATCY	1 cut(s)	264
PsyI	GACNNNGTC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	304
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	5 cut(s)	23, 105, 225, 264, 460
Sau96I	GGNCC	2 cut(s)	51, 386
SchI	GAGTC	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	311
SfaNI	GCATC	1 cut(s)	81
SfoI	GGCGCC	1 cut(s)	139
SgrDI	CGTCGACG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	1 cut(s)	249
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	2 cut(s)	48, 478
StyI	CCWWGG	1 cut(s)	342
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	83, 120, 187
TasI	AATT	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	391
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	15
Vha464I	CTTAAG	1 cut(s)	464
VneI	GTGCAC	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	386
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	2 cut(s)	120, 154
XspI	CTAG	2 cut(s)	48, 478
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.